Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq15031 154 2e-32 seq3997 141 1e-28 seq15694 136 5e-27 seq6526 91.5 2e-13 seq8535 89.7 6e-13 seq15419 87.8 2e-12 seq10 86.0 7e-12 seq3070 84.2 3e-11 seq838 84.2 3e-11 >seq15031 Length=67428 Score = 154 bits (170), Expect = 2e-32 Identities = 241/338 (71%), Gaps = 10/338 (3%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9281 |||||| |||||| | || || || || || || |||| | ||| |||||| || || Sbjct 39397 ATCAAGAATATCAGCACGGTTAGTTGCTGCAATAACAATGACACCAGTGTTTCCTT--CA 39454 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||||||||| ||||||||||| ||||||| || ||||| | ||||||||| || | Sbjct 39455 AAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT--C 39512 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | |||| | | |||| | || || |||||||| ||||||| |||||||| | Sbjct 39513 CTCCGATTCCAGTTCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAAGACAATGC 39572 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | ||| ||| || ||| | | || ||||| || |||| ||| || ||||||| Sbjct 39573 AGGGTGCATTCTCCTTGGCCTTCTTGAAAAGATCACGGACCCGAGAGGCACCAACACCAA 39632 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9518 |||||||||| || || | || | ||| || | || || || ||| | |||||| Sbjct 39633 CAAACATCTCTACGAACTCTGAACCAGAA-ATGGAGAAAAATGGAACACCTGCTTCACCA 39691 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||||| || ||| || || ||||| || || ||||| Sbjct 39692 GCAATCGCCTTGGCCAGCAGGGTCTTCCCAGTTCCTGG 39729 >seq3997 Length=108068 Score = 141 bits (156), Expect = 1e-28 Identities = 339/502 (68%), Gaps = 17/502 (3%) Strand=Plus/Plus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 || |||||||| | |||||||||||| || |||||||| | | || || ||||| Sbjct 89497 TACTCCCCAACCCTCTTCTCAAAGAAATTCGTCTTCCCCTGCAAACTGATCAGCTCCATC 89556 Query 117046 AAGTCAAATGGATTCTTCGCGTTCC---AAATGGGTGGCACCCCAACTTGTTTGAGGAGA 117102 ||||||| ||||||| || || |||| || |||||| | || Sbjct 89557 CAGTCAAACGGATTCTGTGCA--CCGTAAAATTTCCCACATCCCAACGCAACCAAA-AGC 89613 Query 117103 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTA 117162 | ||||| |||| |||| |||||| | ||||| ||| ||||||||| | || Sbjct 89614 CTATCCGCCACAAACTCGATGTACCGGCACATCAGATCACCGTTCATACCCACCAGGGCG 89673 Query 117163 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCG 117222 || || || ||||| | | |||| || |||| || || ||||| || ||||||| | Sbjct 89674 CACGGCAGAGCGTCGCACACGAACTCTCTCTCTATATCCACCGCGTCGCTCACGATACCC 89733 Query 117223 -TGGATAGTTTCGGTAG-TGGGTCTATTACGCAAAGTCTTGAAGAGCTC-CACGGCAAAC 117279 || || | | | | | | | | | || || || | | ||| |||| | || Sbjct 89734 CTGAATCGCTCC--TCGCTCAGCTTCTGACTCAGTAACTCGTACAGCAAGCACG-CGAAG 89790 Query 117280 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATG 117339 || ||| || ||||| ||||| || || || || || ||||| || || ||||| Sbjct 89791 TCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTCAGTCCCGGCATT 89850 Query 117340 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 117399 | || |||||||| | |||| | || |||||||| |||||||||||||| |||||| Sbjct 89851 AACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCC 89910 Query 117400 ACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTG-TGTCAAACCATTT 117458 || ||||| ||||| | || ||||||||||| ||| || | ||| | |||||| Sbjct 89911 ACGCACGCGAACGCCACGAGACGCTCGGCGAA----CGATTCTGAGCCGTCGATCCATTT 89966 Query 117459 CATTGCCCATTTCGCCTTCTTC 117480 || ||||| || ||||||||| Sbjct 89967 CAGGGCCCACTTGGCCTTCTTC 89988 >seq15694 Length=177509 Score = 136 bits (150), Expect = 5e-27 Identities = 237/338 (70%), Gaps = 10/338 (3%) Strand=Plus/Plus Query 9224 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9281 |||||| ||||| | || || || || || || |||| ||||| |||||| || || Sbjct 55444 ATCAAGAATATCTGCACGGTTAGTTGCCGCAATTACAATGATACCAGTGTTTCCTT--CA 55501 Query 9282 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9341 ||||||||||| ||||||||||| ||||||| || ||||| | |||||||| || | Sbjct 55502 AAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTCTCATCATTTCCT--C 55559 Query 9342 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATAC 9399 | | | |||| | | ||| | || || |||||||| ||||||| |||||||| | Sbjct 55560 CTCCAATTCCAGTTCCTCTCTGCCTCCCAACAGCATCAATTTCATCAACAAAGACAATGC 55619 Query 9400 ATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 | ||| ||| || ||| | | || ||||| ||||||| ||| || ||||||| Sbjct 55620 AGGGTGCATTCTCCTTGGCCTTCTTGAAAAGATCACGAACCCGAGAGGCACCAACACCAA 55679 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCC 9518 | |||||||| || || | || | ||| || | || || || ||| | ||| || Sbjct 55680 CGAACATCTCTACGAACTCTGAACCAGAA-ATGGAGAAAAATGGAACACCTGCTTCGCCA 55738 Query 9519 GCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 ||||| || || || | |||||| || || ||||| Sbjct 55739 GCAATTGCCTTCGCCAGCAAAGTCTTCCCAGTTCCTGG 55776 >seq6526 Length=28452 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| ||||| || || || || || |||||| || || ||||| | || ||||| Sbjct 21911 CCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGACCCGGCATTAACCCGCGCTTT 21970 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | |||| | || |||||||| |||||||||||||| ||||| | ||||| ||| Sbjct 21971 TTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGAAGCACGCGAAC 22030 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 || | || | |||||||| || || ||| | |||||||| ||||| || Sbjct 22031 GCGATGAGTCTTTCGGCGAACGATTCTGA---ACCGTCGATCCATTTCAACGCCCACTTG 22087 Query 117472 GCCTTCTTCTC 117482 ||||| || || Sbjct 22088 GCCTTTTTTTC 22098 >seq8535 Length=22056 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 ||||| ||||| || || || || || ||||| || || ||||| | || ||||| Sbjct 6617 CCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGCATTAACCCGCGCTTT 6676 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | |||| | || |||||||| |||||||||||||| |||||||| ||||| || Sbjct 6677 TTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCACGCACGCGAAT 6736 Query 117412 GCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAACCATTTCATTGCCCATTTC 117471 || | || | |||||||| || || ||| | ||| |||| ||||| || Sbjct 6737 GCGATGAGCCTTTCGGCGAACGATTCTGA---ACCGTCGATCCACTTCAACGCCCACTTT 6793 Query 117472 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 ||||| || || | || || || || | ||| || Sbjct 6794 GCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGC 6828 >seq15419 Length=18895 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||||||||||||||||| |||||||||||||||||||| | ||| Sbjct 8789 GCAAAATCACAGTGGAGACCCTCATCTCTAGAAATAAGTTCATTTGAGAATGTCAAGCCC 8848 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 117374 |||||||| || | ||| || | |||| |||| ||||| || Sbjct 8849 GGCATGAGTCCTCTCTTTTTAAGCCAAAAAATGGCGCAAAA 8889 >seq10 Length=262601 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 106463 GCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCT 106522 || |||||||| | |||||| ||||| || || | | ||||||||| | ||||| Sbjct 129938 GCAATTGATGCTAGATTGCATACAGCTGTTTCTGTCGGACTTGTGTACTCAATTATTTCA 129879 Query 106523 GTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCAC 106582 ||||||||||| ||| |||||| || |||| ||||| || || || ||| | ||||| Sbjct 129878 GTACACAAGTTTGAAGACTTAATAGTGCCCAGATTCTGCTGATTGCTTTTTCTATTGCAA 129819 Query 106583 GCATCCT 106589 | ||||| Sbjct 129818 GTATCCT 129812 >seq3070 Length=18027 Score = 84.2 bits (92), Expect = 3e-11 Identities = 252/382 (66%), Gaps = 8/382 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||||||||| || || |||||||| || || | ||||||||| | Sbjct 8574 AAACCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCC--A 8631 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | || || | | ||| | ||||| || ||||||||||| || || ||||| Sbjct 8632 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACCGCGTCAATCTCATCTATAAACACAATG 8691 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | ||| | ||| | ||||| | || | ||| || || |||||||| Sbjct 8692 CAAGG-CGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCCCCCACACC 8750 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||||| || ||||| | || || | |||| | ||| || || | ||| || Sbjct 8751 CACAAACAATTCTACAAATTCTGATGCAGCACATGAAAAGAACGGCACGCCGGCTTCTCC 8810 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || | || | || | || ||||| || ||||| ||| ||| | | || | |||| Sbjct 8811 AGCCACCGCCCTCGCCAACAGGGTCTTTCCGGTACCGGGCGGGCCCACCA-GAAGACACC 8869 Query 9578 CCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 | | ||||| || || || || |||| | || || | || | ||||| |||| Sbjct 8870 CTTTCGGAATTTTCGCTCCGAGAGCAGTGTATTTATCTGGGTTTTTCAAGAAATCTACAA 8929 Query 9637 TCTCTTCCAATTCATCTTTGGC 9658 || | ||||| |||||| Sbjct 8930 CTTCCTGTAATTCCAATTTGGC 8951 >seq838 Length=146170 Score = 84.2 bits (92), Expect = 3e-11 Identities = 252/382 (66%), Gaps = 8/382 (2%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||||||||| || || |||||||| || || | ||||||||| | Sbjct 102974 AAACCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCC--A 103031 Query 9341 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | | | || || | | ||| | || || |||||||||||||| || || ||||| Sbjct 103032 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCTATAAACACAATG 103091 Query 9399 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACC 9457 || || | |||| | || | ||||| | || | ||| || || |||||||| Sbjct 103092 CAAGG-CGCTTTTGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCCCCCACACC 103150 Query 9458 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 9517 ||||||| || ||||| | || || | |||| | ||| || || | ||| || Sbjct 103151 CACAAACAATTCTACAAATTCTGATGCAGCACATGAAAAGAATGGCACGCCGGCTTCTCC 103210 Query 9518 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9577 || | || | || | || ||||| || ||||| ||| ||| | | || | |||| Sbjct 103211 GGCCACCGCCCTTGCCAACAGGGTCTTCCCGGTACCAGGCGGCCCCACCA-GAAGACACC 103269 Query 9578 CCGT-GGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAA 9636 | | ||||| || || || || |||| | || || | || | ||||| |||| Sbjct 103270 CTTTCGGAATTTTTGCTCCGAGGGCAGTGTATTTATCTGGATTTTTCAAGAAATCTACAA 103329 Query 9637 TCTCTTCCAATTCATCTTTGGC 9658 || | ||||| |||||| Sbjct 103330 CTTCCTGTAATTCCAATTTGGC 103351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589783739038040