Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq16707 569 2e-157 seq647 259 5e-64 seq6733 140 4e-28 seq24083 134 2e-26 seq20 134 2e-26 seq574 132 5e-26 seq10199 102 9e-17 >seq16707 Length=103149 Score = 569 bits (630), Expect = 2e-157 Identities = 718/984 (73%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 |||||| | ||| |||| ||||| | ||| | ||||| | || ||||||||||| || Sbjct 23068 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 23009 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| |||||||| ||| | | ||| || ||| | || || || ||||| || Sbjct 23008 ATGATCCCTACCTTATTAACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCC 22950 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | || ||||| | ||| || || | || |||||||| Sbjct 22949 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAA 22890 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||| ||||| || |||| |||| || || ||| | ||||| |||||||| Sbjct 22889 TATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 22830 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAAT 168789 |||||||| || | | ||||| |||||||| ||||| |||||||| || | | | Sbjct 22829 CTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGT 22770 Query 168790 CTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAG 168849 | |||||| || | || | || || |||||| | |||||||| | | | | Sbjct 22769 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCG 22710 Query 168850 ACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGC 168909 || |||||| | |||||||| |||||| |||||||| || || | || || ||| Sbjct 22709 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 22650 Query 168910 AGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAAT 168969 || ||| | | ||||| ||||||| || ||||||||||||||||||| ||||||| Sbjct 22649 TGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAAT 22590 Query 168970 TTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCC 169029 ||||| || |||||||| ||| | |||||||| |||||||| ||||| ||||||||||| Sbjct 22589 ATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCC 22530 Query 169030 CTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGG 169089 || || ||| ||| ||||| ||| | ||||| || || |||||| || |||||||| Sbjct 22529 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGG 22470 Query 169090 TTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGG 169149 ||| | ||||| ||| | | ||||| || || ||||| | |||||| || | || Sbjct 22469 TTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGG 22410 Query 169150 TTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGG 169209 ||||| || |||||||| |||||||| ||||||||||| || || ||||| || || || Sbjct 22409 TTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 22350 Query 169210 TAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 ||||||||||||| ||||| ||||| |||||||| | | | ||||||||| | || Sbjct 22349 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGC 22290 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || ||| | | ||||| || || | ||||| |||| ||||| ||||| Sbjct 22289 TGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 22230 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 | |||||||| || || |||||||| || || ||| | ||| | ||| ||| Sbjct 22229 TCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATAC 22170 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 |||| ||| | | ||| | || || |||||||||||||| |||||||| ||||| || Sbjct 22169 TTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 22110 Query 169450 TCACAACTTCCCACTAGACTTAGC 169473 ||| |||||||| |||||| |||| Sbjct 22109 TCATAACTTCCCTCTAGACCTAGC 22086 >seq647 Length=36880 Score = 259 bits (286), Expect = 5e-64 Identities = 396/558 (71%), Gaps = 5/558 (1%) Strand=Plus/Minus Query 168584 TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTA 168643 || ||| | || || |||||||| || || || ||| || || || | || ||||| Sbjct 14163 TTTATTTTCGCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGCCTGTT 14104 Query 168644 GCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAAC 168703 | || ||||| | || |||||||| || |||||||||| || ||| |||| | Sbjct 14103 TCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTACTTCTACA 14044 Query 168704 GCAATCGGTCTACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATAT 168763 || || ||| | ||||| ||||| || |||||||| || | || ||||| |||||||| Sbjct 14043 GCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTGATGAATGGTTATAC 13984 Query 168764 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTAATCGGAATC-TCTGCCTACAT 168822 ||||| |||||||| || | | | | |||||| | | || | | || ||||| Sbjct 13983 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTGT-TACAT 13925 Query 168823 GGGTAGACAGTGGGAA-TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTT 168881 |||| | |||||||| ||| | | | | | |||||| ||||| ||| |||||| | Sbjct 13924 GGGTCGTGAGTGGGAACTTAGCTTCC-GTTTGGGTATGCAACCTTTGATTGTTGTTGCAT 13866 Query 168882 ATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTT 168941 ||||||| | || | || || ||| || ||| | | |||||| ||||| | || Sbjct 13865 ATTCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAA 13806 Query 168942 CTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTCC 169001 ||| ||| ||||||||||| ||||||| ||||| || |||||||||||| ||||| ||| Sbjct 13805 GTTTTTCTAATGGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTACTCC 13746 Query 169002 AAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAG-GTATGTTC 169060 | || ||||||||||| |||||||| | || || ||| ||| |||| | | | ||| Sbjct 13745 ATGCTGAGCACAACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTATTC 13686 Query 169061 GGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGAGAG 169120 || || || | |||| || ||||||||||| | ||||| ||| | | ||||| || Sbjct 13685 GGCGGCTCCCCATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAA 13626 Query 169121 ACTACTGAGGAAGAATCT 169138 || || || | |||||| Sbjct 13625 ACCACAGAAAATGAATCT 13608 >seq6733 Length=89479 Score = 140 bits (154), Expect = 4e-28 Identities = 206/288 (72%), Gaps = 3/288 (1%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | | | |||| | |||| | ||| ||||| |||| |||| ||||| || Sbjct 8734 TTCTGTAACTAGATAACTAACACTGAAAACCATCTTTACATTGGACGGTTTGGTGTTTTG 8793 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| |||||||| ||| | | ||| || ||| | || || |||||||| || Sbjct 8794 ATGATCCCTACCTTATTAACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTCC 8852 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | || ||||| | || ||||| | ||||||||||| Sbjct 8853 TCCAGTAGATATTGATGGGATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAA 8912 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||||||||| || |||| |||| || || ||| | ||||| |||||||| Sbjct 8913 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAAT 8972 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777 | |||||| || | | ||||| |||| | || ||||||||||| Sbjct 8973 CT-GGAAGCGGCATCCGTTGATGAATGGTGGTCCAACGGTGGTCCTTA 9019 >seq24083 Length=1989 Score = 134 bits (148), Expect = 2e-26 Identities = 178/246 (72%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 169229 GCAAGTTTC-AACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATG 169287 |||||||| |||||||| | | | || ||||||||||| | | || || ||| | Sbjct 715 GCAAGTTTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGG 774 Query 169288 TGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTT 169347 | | ||||| || || | |||||| | || ||||| |||||| | || || || || || Sbjct 775 TATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTT 834 Query 169348 TAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAA 169407 ||||||| || || ||| | | || | ||| ||| |||| ||| | |||| Sbjct 835 CAACCAATATGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAA 894 Query 169408 CAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGA 169467 | | || || |||||||||||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct 895 CCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 954 Query 169468 CTTAGC 169473 | |||| Sbjct 955 CCTAGC 960 >seq20 Length=236725 Score = 134 bits (148), Expect = 2e-26 Identities = 178/246 (72%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 169229 GCAAGTTTC-AACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATG 169287 |||||||| |||||||| | | | || ||||||||||| | | || || ||| | Sbjct 78386 GCAAGTTTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGG 78445 Query 169288 TGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTT 169347 | | ||||| || || | |||||| | || ||||| |||||| | || || || || || Sbjct 78446 TATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTT 78505 Query 169348 TAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAA 169407 ||||||| || || ||| | | || | ||| ||| |||| ||| | |||| Sbjct 78506 CAACCAATTTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAA 78565 Query 169408 CAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGA 169467 | | || || |||||||||||||| |||||||| ||||| ||||| |||||||| ||||| Sbjct 78566 CCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 78625 Query 169468 CTTAGC 169473 | |||| Sbjct 78626 CCTAGC 78631 >seq574 Length=41708 Score = 132 bits (146), Expect = 5e-26 Identities = 160/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 169256 CACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGT 169315 || ||||||||||| | | || || ||| || | ||||| || || | |||||| | Sbjct 2272 CATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGC 2331 Query 169316 ACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGT 169375 || ||||| |||||| | || || || || || |||||||| || || ||| | | || Sbjct 2332 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGC 2391 Query 169376 AAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATG 169435 | ||| ||| |||| ||| | ||||| | || || |||||||||||||| ||| Sbjct 2392 CGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATG 2451 Query 169436 CATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473 ||||| ||||| ||||| |||||||| |||||| |||| Sbjct 2452 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 2489 >seq10199 Length=21994 Score = 102 bits (112), Expect = 9e-17 Identities = 136/191 (71%), Gaps = 10/191 (5%) Strand=Plus/Plus Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207 || |||| ||||||||||| |||||||| |||||||| || || || ||||| || Sbjct 14228 GGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGCTA---- 14283 Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTA 169267 || |||||||| ||||| |||||||||||||| | | || ||||||||| Sbjct 14284 ------TTGATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTCTTCCTA 14337 Query 169268 GCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTC 169327 | | | || || ||| || | ||||| || || | |||||| | || ||||| ||| Sbjct 14338 ACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 14397 Query 169328 AACTTGAACGG 169338 ||| | || || Sbjct 14398 AACCTAAATGG 14408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564253069450080