Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq16707 491 7e-134
seq647 248 1e-60
seq24083 122 1e-22
seq20 122 1e-22
seq574 118 2e-21
seq10199 89.7 8e-13
>seq16707
Length=103149
Score = 491 bits (544), Expect = 7e-134
Identities = 692/972 (71%), Gaps = 0/972 (0%)
Strand=Plus/Minus
Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374
|| || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | |
Sbjct 23047 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTAACC 22988
Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434
|| || || || || | || ||||||||||| ||||| || ||||| || || ||
Sbjct 22987 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 22928
Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494
| ||||| ||| ||||||||||| | || || ||||| || ||||||||||| || |
Sbjct 22927 CGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATT 22868
Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554
|||| ||| || || || || ||||| ||||| ||||||||||| ||| | |||||
Sbjct 22867 CCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGCATCTGTTGAT 22808
Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614
|||||| | |||||||| || |||| | || || | | |||||| | ||||| |
Sbjct 22807 GAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 22748
Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674
|| || || | |||||||||| || | | | |||||| | ||||||||
Sbjct 22747 GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 22688
Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734
|||||| || || || ||||| | ||||| ||| || ||| | | || || |
Sbjct 22687 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATT 22628
Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794
||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| |||
Sbjct 22627 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 22568
Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854
|||| |||||||| ||||| ||||| || ||||| ||||| |||||||||||||| |||
Sbjct 22567 ATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 22508
Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914
||||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | |
Sbjct 22507 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 22448
Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974
||||| || || ||||| | |||||| || | ||||||| || || ||||||||
Sbjct 22447 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAA 22388
Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034
||||| || || || || || || || ||||| ||||| || | ||||||||||| ||
Sbjct 22387 GAAACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 22328
Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094
||| |||||||| | | | ||||||||| | || || | ||||| | | ||
Sbjct 22327 AGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATT 22268
Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154
||| ||||| | ||| | |||||||| ||||| || ||||| ||||| ||||||
Sbjct 22267 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAAC 22208
Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214
|| ||||| || || ||| |||||| ||||||||| || | | ||| |
Sbjct 22207 CAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGT 22148
Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274
|| |||||||||||||| ||||| || ||||| ||||| |||||||| ||||| |
Sbjct 22147 GCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 22088
Query 216275 GCTGCTGCTGAA 216286
|||||| ||||
Sbjct 22087 GCTGCTCTTGAA 22076
>seq647
Length=36880
Score = 248 bits (274), Expect = 1e-60
Identities = 386/548 (70%), Gaps = 3/548 (1%)
Strand=Plus/Minus
Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455
|| ||||| ||||| ||||| || ||| || || || | ||||| ||| |||| |||
Sbjct 14154 GCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGCCTGTTTCTGGATCT 14095
Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515
|| | || || ||||| || ||||| |||| || |||| ||| | || || ||
Sbjct 14094 CTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTACTTCTACAGCTATAGGT 14035
Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGA 215575
|| ||||| ||||| ||||||||||| ||| | |||| |||||| | |||||||| ||
Sbjct 14034 TTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTGATGAATGGTTATACAATGGCGGT 13975
Query 215576 CCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT-TCTGCATACTGCGGAAGACA 215634
|||| | || || | | |||||| | ||||| | | || ||| || | |
Sbjct 13974 CCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTGT-TACATGGGTCGTGA 13916
Query 215635 GTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACC 215694
|||||||||| | | | || |||||| ||||| ||| |||||| || || || |
Sbjct 13915 GTGGGAACTTAGCTTCCGTTTGGGTATGCAACCTTTGATTGTTGTTGCATATTCAGCTCT 13856
Query 215695 TGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGA 215754
||| | ||||| ||| || ||| | | || ||| | ||| | || ||| ||| |
Sbjct 13855 TGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGTTTTTCTAA 13796
Query 215755 TGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCA 215814
|| |||||| | ||||||||||| || ||||||| |||| | || |||| ||||||||
Sbjct 13795 TGGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTACTCCATGCTGAGCA 13736
Query 215815 CAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTG-GTGTCTTCGGTGGTTCAT 215873
|||||| || |||||| |||| |||||||||||| | |||| | || ||||| || ||
Sbjct 13735 CAACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTATTCGGCGGCTCCC 13676
Query 215874 TGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGC 215933
||| ||| ||||| ||||| | || || ||| | | ||||| || || || ||
Sbjct 13675 CATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA 13616
Query 215934 AAGAATCT 215941
| ||||||
Sbjct 13615 ATGAATCT 13608
>seq24083
Length=1989
Score = 122 bits (134), Expect = 1e-22
Identities = 177/250 (71%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 216037 TTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTG 216096
||| |||||||| | | | || |||||||| || || | ||||| | |||||||
Sbjct 721 TTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 780
Query 216097 GGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCA 216156
| ||||| | ||| || |||||||| |||||||| || |||||||| ||||||||
Sbjct 781 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 840
Query 216157 GTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGC 216216
| ||| || || || || ||| ||| ||||| || | ||||| | ||
Sbjct 841 ATATGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGC 900
Query 216217 AGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGC 216276
|||||||||||||| ||||| || ||||| ||||| |||||||| ||||| | ||
Sbjct 901 TAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 960
Query 216277 TGCTGCTGAA 216286
|||| ||||
Sbjct 961 TGCTATTGAA 970
>seq20
Length=236725
Score = 122 bits (134), Expect = 1e-22
Identities = 177/250 (71%), Gaps = 0/250 (0%)
Strand=Plus/Plus
Query 216037 TTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTG 216096
||| |||||||| | | | || |||||||| || || | ||||| | |||||||
Sbjct 78392 TTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 78451
Query 216097 GGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCA 216156
| ||||| | ||| || |||||||| |||||||| || |||||||| ||||||||
Sbjct 78452 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 78511
Query 216157 GTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGC 216216
| ||| || || || || ||| ||| ||||| || | ||||| | ||
Sbjct 78512 ATTTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGC 78571
Query 216217 AGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGC 216276
|||||||||||||| ||||| || ||||| ||||| |||||||| ||||| | ||
Sbjct 78572 TAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 78631
Query 216277 TGCTGCTGAA 216286
|||| ||||
Sbjct 78632 TGCTATTGAA 78641
>seq574
Length=41708
Score = 118 bits (130), Expect = 2e-21
Identities = 163/228 (71%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 216059 CACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCA 216118
|| |||||||| || || | ||||| | |||||||| ||||| | ||| ||
Sbjct 2272 CATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGC 2331
Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178
|||||||| |||||||| || |||||||| |||||||| ||||| || || ||
Sbjct 2332 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGC 2391
Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238
|| ||| ||| ||||| || | ||||| | || |||||||||||||| |||
Sbjct 2392 CGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATG 2451
Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286
|| || ||||| ||||| |||||||| ||||| | |||| | ||||
Sbjct 2452 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGATATTGAA 2499
>seq10199
Length=21994
Score = 89.7 bits (98), Expect = 8e-13
Identities = 135/192 (70%), Gaps = 10/192 (5%)
Strand=Plus/Plus
Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010
|| |||| ||||| |||||||| ||||| || || ||||||||||| || || || ||
Sbjct 14228 GGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGCTA--TT 14285
Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 216070
| ||||||||||| || |||||||||||| | | || ||||||||
Sbjct 14286 G--------ATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTCTTCCTA 14337
Query 216071 GCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTC 216130
| || | ||||| | |||||||| ||||| | ||| || |||||||| |||
Sbjct 14338 ACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 14397
Query 216131 AACCTTAACGGT 216142
||||| || |||
Sbjct 14398 AACCTAAATGGT 14409
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 744832733432080
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