Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq16707 491 7e-134 seq647 248 1e-60 seq24083 122 1e-22 seq20 122 1e-22 seq574 118 2e-21 seq10199 89.7 8e-13 >seq16707 Length=103149 Score = 491 bits (544), Expect = 7e-134 Identities = 692/972 (71%), Gaps = 0/972 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| | || ||||| ||||| | ||||| ||| | | | | Sbjct 23047 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTAACC 22988 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||||||||| ||||| || ||||| || || || Sbjct 22987 GCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATT 22928 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | ||||| ||| ||||||||||| | || || ||||| || ||||||||||| || | Sbjct 22927 CGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATT 22868 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || ||||| ||||| ||||||||||| ||| | ||||| Sbjct 22867 CCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGCATCTGTTGAT 22808 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | |||||||| || |||| | || || | | |||||| | ||||| | Sbjct 22807 GAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTA 22748 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || || || | |||||||||| || | | | |||||| | |||||||| Sbjct 22747 GCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATT 22688 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | ||||| ||| || ||| | | || || | Sbjct 22687 GCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATT 22628 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 ||||| || ||||||||||| |||||| | ||||| ||||| || ||||||| ||| Sbjct 22627 GGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATG 22568 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| |||||||| ||||| ||||| || ||||| ||||| |||||||||||||| ||| Sbjct 22567 ATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCT 22508 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| ||||| | ||| ||| ||||| ||||| | || || ||| | | Sbjct 22507 GGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTG 22448 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || ||||| | |||||| || | ||||||| || || |||||||| Sbjct 22447 ATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAA 22388 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || || || || || || ||||| ||||| || | ||||||||||| || Sbjct 22387 GAAACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCT 22328 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||| |||||||| | | | ||||||||| | || || | ||||| | | || Sbjct 22327 AGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATT 22268 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| ||||| | ||| | |||||||| ||||| || ||||| ||||| |||||| Sbjct 22267 TGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAAC 22208 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || ||||| || || ||| |||||| ||||||||| || | | ||| | Sbjct 22207 CAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGT 22148 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||| ||||| || ||||| ||||| |||||||| ||||| | Sbjct 22147 GCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 22088 Query 216275 GCTGCTGCTGAA 216286 |||||| |||| Sbjct 22087 GCTGCTCTTGAA 22076 >seq647 Length=36880 Score = 248 bits (274), Expect = 1e-60 Identities = 386/548 (70%), Gaps = 3/548 (1%) Strand=Plus/Minus Query 215396 GCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCT 215455 || ||||| ||||| ||||| || ||| || || || | ||||| ||| |||| ||| Sbjct 14154 GCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGCCTGTTTCTGGATCT 14095 Query 215456 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGA 215515 || | || || ||||| || ||||| |||| || |||| ||| | || || || Sbjct 14094 CTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTACTTCTACAGCTATAGGT 14035 Query 215516 TTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGA 215575 || ||||| ||||| ||||||||||| ||| | |||| |||||| | |||||||| || Sbjct 14034 TTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTGATGAATGGTTATACAATGGCGGT 13975 Query 215576 CCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT-TCTGCATACTGCGGAAGACA 215634 |||| | || || | | |||||| | ||||| | | || ||| || | | Sbjct 13974 CCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTGT-TACATGGGTCGTGA 13916 Query 215635 GTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACC 215694 |||||||||| | | | || |||||| ||||| ||| |||||| || || || | Sbjct 13915 GTGGGAACTTAGCTTCCGTTTGGGTATGCAACCTTTGATTGTTGTTGCATATTCAGCTCT 13856 Query 215695 TGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGA 215754 ||| | ||||| ||| || ||| | | || ||| | ||| | || ||| ||| | Sbjct 13855 TGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGTTTTTCTAA 13796 Query 215755 TGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCA 215814 || |||||| | ||||||||||| || ||||||| |||| | || |||| |||||||| Sbjct 13795 TGGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTACTCCATGCTGAGCA 13736 Query 215815 CAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTG-GTGTCTTCGGTGGTTCAT 215873 |||||| || |||||| |||| |||||||||||| | |||| | || ||||| || || Sbjct 13735 CAACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTATTCGGCGGCTCCC 13676 Query 215874 TGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGC 215933 ||| ||| ||||| ||||| | || || ||| | | ||||| || || || || Sbjct 13675 CATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA 13616 Query 215934 AAGAATCT 215941 | |||||| Sbjct 13615 ATGAATCT 13608 >seq24083 Length=1989 Score = 122 bits (134), Expect = 1e-22 Identities = 177/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 216037 TTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTG 216096 ||| |||||||| | | | || |||||||| || || | ||||| | ||||||| Sbjct 721 TTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 780 Query 216097 GGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCA 216156 | ||||| | ||| || |||||||| |||||||| || |||||||| |||||||| Sbjct 781 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 840 Query 216157 GTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGC 216216 | ||| || || || || ||| ||| ||||| || | ||||| | || Sbjct 841 ATATGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGC 900 Query 216217 AGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGC 216276 |||||||||||||| ||||| || ||||| ||||| |||||||| ||||| | || Sbjct 901 TAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 960 Query 216277 TGCTGCTGAA 216286 |||| |||| Sbjct 961 TGCTATTGAA 970 >seq20 Length=236725 Score = 122 bits (134), Expect = 1e-22 Identities = 177/250 (71%), Gaps = 0/250 (0%) Strand=Plus/Plus Query 216037 TTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTG 216096 ||| |||||||| | | | || |||||||| || || | ||||| | ||||||| Sbjct 78392 TTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 78451 Query 216097 GGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCA 216156 | ||||| | ||| || |||||||| |||||||| || |||||||| |||||||| Sbjct 78452 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 78511 Query 216157 GTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGC 216216 | ||| || || || || ||| ||| ||||| || | ||||| | || Sbjct 78512 ATTTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGC 78571 Query 216217 AGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGC 216276 |||||||||||||| ||||| || ||||| ||||| |||||||| ||||| | || Sbjct 78572 TAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 78631 Query 216277 TGCTGCTGAA 216286 |||| |||| Sbjct 78632 TGCTATTGAA 78641 >seq574 Length=41708 Score = 118 bits (130), Expect = 2e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 216059 CACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCA 216118 || |||||||| || || | ||||| | |||||||| ||||| | ||| || Sbjct 2272 CATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGC 2331 Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| |||||||| || |||||||| |||||||| ||||| || || || Sbjct 2332 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGC 2391 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 || ||| ||| ||||| || | ||||| | || |||||||||||||| ||| Sbjct 2392 CGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATG 2451 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 || || ||||| ||||| |||||||| ||||| | |||| | |||| Sbjct 2452 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGATATTGAA 2499 >seq10199 Length=21994 Score = 89.7 bits (98), Expect = 8e-13 Identities = 135/192 (70%), Gaps = 10/192 (5%) Strand=Plus/Plus Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 || |||| ||||| |||||||| ||||| || || ||||||||||| || || || || Sbjct 14228 GGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGCTA--TT 14285 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 216070 | ||||||||||| || |||||||||||| | | || |||||||| Sbjct 14286 G--------ATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTCTTCCTA 14337 Query 216071 GCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTC 216130 | || | ||||| | |||||||| ||||| | ||| || |||||||| ||| Sbjct 14338 ACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 14397 Query 216131 AACCTTAACGGT 216142 ||||| || ||| Sbjct 14398 AACCTAAATGGT 14409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744832733432080