Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq16707 522 3e-143 seq647 230 3e-55 seq574 132 6e-26 seq24083 129 7e-25 seq20 129 7e-25 seq6733 113 5e-20 seq10199 111 2e-19 >seq16707 Length=103149 Score = 522 bits (578), Expect = 3e-143 Identities = 697/969 (72%), Gaps = 0/969 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || | || ||||||||||| ||||||||||| Sbjct 23059 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 23000 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 ||||| | ||| | | ||||| | || |||||||| || || || || || Sbjct 22999 ACCTTATTAACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGAT 22940 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | || ||||| | ||||| || | || || ||||| || |||||| Sbjct 22939 ATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCT 22880 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | ||||| || || || |||||||| Sbjct 22879 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGCG 22820 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||| ||||| || || || ||||||||| | || || | | |||||| Sbjct 22819 GCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTC 22760 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| | |||||||||| | |||| | |||||| Sbjct 22759 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATG 22700 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 ||||||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 22699 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTG 22640 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | || ||| | ||||| ||| |||||| || || |||||| |||| || || ||||| Sbjct 22639 ATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACT 22580 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||| ||| | |||||||| |||||||| ||||| |||||||| ||||| || ||| Sbjct 22579 TTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATG 22520 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || ||| || ||||| ||||| | ||| Sbjct 22519 TTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 22460 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || || || ||||| || || | || |||| ||| Sbjct 22459 ACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTT 22400 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| |||||||| || || ||||| || || ||||| || ||||| || | ||| Sbjct 22399 GGTCAAGAGGAAGAAACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATC 22340 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| |||||||| |||| | | ||||||||| | ||| | | ||| Sbjct 22339 TTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCT 22280 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | || ||||| ||| | | |||||| | || ||||| || || || || ||| Sbjct 22279 GTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGA 22220 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| || | || ||| | ||| || || ||| ||||| || Sbjct 22219 TTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGAT 22160 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 | | ||| | || || || ||||||||||| |||||||| |||||||| || |||||| Sbjct 22159 ATCATCAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTC 22100 Query 170659 CCACTTGAC 170667 || || ||| Sbjct 22099 CCTCTAGAC 22091 >seq647 Length=36880 Score = 230 bits (254), Expect = 3e-55 Identities = 387/556 (70%), Gaps = 3/556 (1%) Strand=Plus/Minus Query 169783 TTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTA 169842 ||||| | || ||||| || ||||| || || || ||||| || | || ||||| Sbjct 14163 TTTATTTTCGCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGCCTGTT 14104 Query 169843 GCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAAC 169902 | || || | | || || ||||| || ||||| |||| || ||| |||| | Sbjct 14103 TCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTACTTCTACA 14044 Query 169903 GCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTAT 169962 || || ||| | ||||| || || || |||||||| ||| | | ||||| ||||| || Sbjct 14043 GCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTGATGAATGGTTATAC 13984 Query 169963 AACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATC-TCTGCCTACAT 170021 || || ||||||||| | || || | | |||||| | | || | | || ||||| Sbjct 13983 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTGT-TACAT 13925 Query 170022 GGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATA 170081 |||| | |||||||||| | |||||| ||||||| |||| ||| ||| ||||| Sbjct 13924 GGGTCGTGAGTGGGAACTTAGCTTCCGTTTGGGTATGCAACCTTTGATTGTTGTTGCATA 13865 Query 170082 TTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATC 170141 ||| |||| || |||| || ||||| ||||| | || || | ||| | ||| Sbjct 13864 TTCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAG 13805 Query 170142 TTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCA 170201 ||| || | || |||||| |||| ||||| ||||| || ||||||||| ||||| |||| Sbjct 13804 TTTTTCTAATGGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTACTCCA 13745 Query 170202 AGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTG-GTATGTTCG 170260 || ||||||||||| ||||||||| |||| || ||| ||| | |||| | | |||| Sbjct 13744 TGCTGAGCACAACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTATTCG 13685 Query 170261 GAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGA 170320 | || | | ||| || ||||| ||||| | ||||| ||| | | ||||| || | Sbjct 13684 GCGGCTCCCCATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAA 13625 Query 170321 CAACAGATAACGAGTC 170336 | ||||| || || || Sbjct 13624 CCACAGAAAATGAATC 13609 >seq574 Length=41708 Score = 132 bits (146), Expect = 6e-26 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 170455 CACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGC 170514 || |||||||| ||| | | ||||||||| | |||||||| ||| | | ||||| || Sbjct 2272 CATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGC 2331 Query 170515 ACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGT 170574 || ||||| || ||||| ||||| || || |||||||| || | || ||| | || Sbjct 2332 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGC 2391 Query 170575 AAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATG 170634 ||| || ||| ||||| || | ||||| | || || || ||||||||||| ||| Sbjct 2392 CGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATG 2451 Query 170635 CATGAGCGTAATGCACACAACTTCCCACTTGAC 170667 ||||| |||||||| || |||||||| || ||| Sbjct 2452 CATGAACGTAATGCTCATAACTTCCCTCTAGAC 2484 >seq24083 Length=1989 Score = 129 bits (142), Expect = 7e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 170434 TTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGG 170493 || ||||| |||| | | || |||||||| ||| | | ||||||||| | |||||| Sbjct 722 TTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 781 Query 170494 TTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAG 170553 || ||| | | ||||| |||| ||||| || ||||| ||||| || || |||||||| Sbjct 782 TTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 841 Query 170554 TCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCA 170613 | | || ||| | || ||| || ||| ||||| || | ||||| | || Sbjct 842 TATGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCT 901 Query 170614 AACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGAC 170667 || || ||||||||||| |||||||| |||||||| || |||||||| || ||| Sbjct 902 AATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 955 >seq20 Length=236725 Score = 129 bits (142), Expect = 7e-25 Identities = 169/234 (72%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 170434 TTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGG 170493 || ||||| |||| | | || |||||||| ||| | | ||||||||| | |||||| Sbjct 78393 TTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 78452 Query 170494 TTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAG 170553 || ||| | | ||||| |||| ||||| || ||||| ||||| || || |||||||| Sbjct 78453 TTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 78512 Query 170554 TCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCA 170613 | | || ||| | || ||| || ||| ||||| || | ||||| | || Sbjct 78513 TTTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCT 78572 Query 170614 AACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGAC 170667 || || ||||||||||| |||||||| |||||||| || |||||||| || ||| Sbjct 78573 AATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGAC 78626 >seq6733 Length=89479 Score = 113 bits (124), Expect = 5e-20 Identities = 187/269 (70%), Gaps = 1/269 (0%) Strand=Plus/Plus Query 169730 TTGGTTGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCG 169789 |||| |||| ||||| ||||||||||| ||||| | ||| | | ||||| Sbjct 8774 TTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTAACCGCAACTTCTGTATTTATTA 8833 Query 169790 TTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTT 169849 | || ||||| || ||||| || || || || ||||| || | || ||||| | || | Sbjct 8834 TCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGGATTCGTGAGCCTGTTTCTGGAT 8893 Query 169850 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 169909 | | | ||||| ||||| || ||||| ||||| || |||| |||| || || | Sbjct 8894 CTCTACTTTATGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAG 8953 Query 169910 GTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTG 169969 || | ||||| || || || | |||||| ||| | | ||||| |||| || ||||||| Sbjct 8954 GTTTGCACTTTTACCCAATCT-GGAAGCGGCATCCGTTGATGAATGGTGGTCCAACGGTG 9012 Query 169970 GTCCTTATCAATTAGTTATCTTCCACTTC 169998 |||||||| | || || | | |||||| Sbjct 9013 GTCCTTATGAGATAATTGTTCTACACTTC 9041 >seq10199 Length=21994 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 10/191 (5%) Strand=Plus/Plus Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406 || |||| |||||| ||||| |||||||| || || || || || || ||||| || || Sbjct 14228 GGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGCTA--TT 14285 Query 170407 GGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTT 170466 | ||||||||||||||||| || ||||| || | | | || |||||||| Sbjct 14286 G--------ATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTCTTCCTA 14337 Query 170467 GCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTT 170526 || | | ||||||||| | |||||||| ||| | | ||||| |||| ||||| || Sbjct 14338 ACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 14397 Query 170527 AACCTTAATGG 170537 ||||| ||||| Sbjct 14398 AACCTAAATGG 14408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582653321482400