Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_015569.1
Length=178563
Score E
Sequences producing significant alignments: (Bits) Value
seq16707 621 4e-173
seq647 316 2e-81
seq24083 161 1e-34
seq20 161 1e-34
seq574 150 2e-31
seq10199 145 9e-30
seq6008 134 2e-26
>seq16707
Length=103149
Score = 621 bits (688), Expect = 4e-173
Identities = 723/973 (74%), Gaps = 2/973 (0%)
Strand=Plus/Plus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
||||||||||| || |||||||| ||||| |||||||||||||| ||||| || |
Sbjct 22098 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTGATG 22157
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||| ||||| | ||| || ||||||||| || | | || ||||| ||
Sbjct 22158 ATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTG 22217
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
||||| || ||||| || ||||| || |||| ||| | ||||| |||||||| || ||
Sbjct 22218 AATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACT 22277
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224
|| ||||||||||||||||| ||||| | ||||||| ||||| || |||||| |||
Sbjct 22278 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGG 22337
Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284
||||| | || || || || || ||||| || ||||||||||||||||| || ||||||
Sbjct 22338 AAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTTTCTTCCTCTTGA 22397
Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344
|| || ||||||| | || || | ||||| || ||||| | ||| | | |||
Sbjct 22398 CCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGATCAAACTAGAG 22457
Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404
|| || | ||||||||||| ||| |||||| | || |||||||||||||| || ||
Sbjct 22458 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCT 22517
Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464
||||||||||| |||||||||||||||||||| || |||||||| |||| ||| |||||
Sbjct 22518 AACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAATCATAAAGTTG 22577
Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524
|| || || || || || | ||||| |||||||||||| ||||| || | ||| ||
Sbjct 22578 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGGTAA 22637
Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584
| | ||| ||||||| || |||||||| ||||| || || |||||| ||||| |||
Sbjct 22638 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 22697
Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644
|||||||| ||||| | |||||||| ||||||||||| ||| | | ||||||
Sbjct 22698 CGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 22757
Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704
| |||||| | |||| || | |||||| || ||||| |||| |||||| || | | |
Sbjct 22758 AAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACAGAT 22817
Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764
|| |||||||| || || || || || | ||| ||||| ||| | |||| | ||||
Sbjct 22818 GCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCA 22877
Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824
||||| || || ||||||||||| | | |||||||| || |||||||| ||||| |||
Sbjct 22878 CCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCA 22937
Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883
||||| ||||| || ||| | | ||| || || || || ||||| ||| || | | ||
Sbjct 22938 ATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA-AGTTGCGGTTAATAA 22996
Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943
|| || ||||| | | || ||||| || | || | |||||| | ||| || |
Sbjct 22997 GGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTAT 23056
Query 84944 CCAATCACAGAAG 84956
||| | ||||||
Sbjct 23057 CCAGTTGCAGAAG 23069
>seq647
Length=36880
Score = 316 bits (350), Expect = 2e-81
Identities = 412/566 (73%), Gaps = 3/566 (1%)
Strand=Plus/Plus
Query 84313 CATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGA 84372
|||||||||| ||||| | ||| | | |||||| || | ||||||||||| ||| ||
Sbjct 13613 CATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGA 13672
Query 84373 ATAGAGCTCCACCGAATACAC-CAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATG 84431
|| | | || |||||||| | |||| | || ||||||||||| | ||||||||||||
Sbjct 13673 ATGGGGAGCCGCCGAATACCCACAGCTATACCTAACATGTGAAATGTGTGCATAAGGATG 13732
Query 84432 TTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATG 84491
|| || || || |||| || | |||| ||||||| || || ||||| || | |||||
Sbjct 13733 TTGTGCTCAGCATGGAGTACGATCATGAAGTTGAAAGTACCAGAGATTCCTACAGGCATA 13792
Query 84492 CCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCA 84551
|||| ||| ||| |||| || | || || | | ||| ||||||| || ||||||
Sbjct 13793 CCATTAGAAAAACTTCCTTAACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCA 13852
Query 84552 ACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCC 84611
|| |||| || || |||||| ||| | || ||||||| | ||| | |||||||
Sbjct 13853 ACAAGAGCTGAATATGCAACAACAATCAAAGGTTGCATACCCAAACGGAAGCTAAGTTCC 13912
Query 84612 CATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAA 84671
|| ||||||||||||||| | | |||||| || |||||| | |||| || | ||||
Sbjct 13913 CACTCACGACCCATGTAACACACTACACCAAGCAAGAAGTGTAGAACAATTAGCTCATAA 13972
Query 84672 GGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGT 84731
|| || ||||| |||| |||||| || || ||| |||||||| || || || || ||
Sbjct 13973 GGACCGCCATTGTATAACCATTCATCAATGGATGCCGCTTCCCAGATCGGGTAAAAGTGC 14032
Query 84732 AGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATG 84791
| ||| ||||| |||| | ||| | | |||| || || || ||||||||||| |
Sbjct 14033 AAACCTATAGCTGTAGAAGTAGGATTAATGACACCTGAGATAATATTGTTTCCGTAAAGT 14092
Query 84792 AGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAAT 84851
||||| |||| || |||||||| ||||| ||| ||| ||||| || ||| ||| |||
Sbjct 14093 AGAGATCCAGAAACAGGCTCACGAATACCATCAGCATCTACTGGAGGAGCAGCAATGAAG 14152
Query 84852 GCAATGATGAA-ACAGACAGTGGCAG 84876
|| | || || ||||| ||| ||||
Sbjct 14153 GCGAAAATAAATACAGA-AGTTGCAG 14177
>seq24083
Length=1989
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
||||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 948 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTAATG 889
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||||||||| | |||||| ||| ||||| || | | || ||||| ||
Sbjct 888 ATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACATATTGGTTGAAATTG 829
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| || || || ||||| ||||| | ||| | ||||| ||||| || || ||
Sbjct 828 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 769
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAA 84211
|| ||||||||||| | ||| || || | ||||||| ||||| ||
Sbjct 768 ACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTCAA 722
>seq20
Length=236725
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
||||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 78619 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTAATG 78560
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||||||||| | |||||| ||| ||||| || | | || ||||| ||
Sbjct 78559 ATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAAATTGGTTGAAATTG 78500
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| || || || ||||| ||||| | ||| | ||||| ||||| || || ||
Sbjct 78499 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 78440
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAA 84211
|| ||||||||||| | ||| || || | ||||||| ||||| ||
Sbjct 78439 ACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTCAA 78393
>seq574
Length=41708
Score = 150 bits (166), Expect = 2e-31
Identities = 157/206 (76%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
||||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 2477 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTAATG 2418
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||||||||| | |||||| ||| ||||| || | | || ||||| ||
Sbjct 2417 ATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGATTGGTTGAAATTG 2358
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| || || || ||||| ||||| | ||| | ||||| ||||| || || ||
Sbjct 2357 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 2298
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTG 84190
|| ||||||||||| | ||| || ||
Sbjct 2297 ACAGGCCAAGCAGCTAGGAAGAAATG 2272
>seq10199
Length=21994
Score = 145 bits (160), Expect = 9e-30
Identities = 201/284 (71%), Gaps = 22/284 (8%)
Strand=Plus/Minus
Query 84015 ACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTT 84074
||||| |||||||| ||||| |||| | ||| |||||||| || | |||||| |
Sbjct 14489 ACTTCGATACCAAGATTAGCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGGCCT 14430
Query 84075 TGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTA 84134
|| ||||| || | | |||||| ||||| || || || ||||| |||||
Sbjct 14429 TGACTATCAACTACA----GATTGA--------CCATTTAGGTTGAAAGCCATAGTGCTG 14382
Query 84135 ACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGA 84194
| ||| | ||||| ||||| || || || || |||||||||| | ||| || || | |
Sbjct 14381 ATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGTTAGGAAGAAATGTAAA 14322
Query 84195 GAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCA 84254
||| || |||||||| |||||| |||||||| | ||||| ||||||
Sbjct 14321 GAAAGAGAGTTGTTGAAACTAGCATATTGGAAGATCAA----------TAGCCATGAGCA 14272
Query 84255 GCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACC 84298
|| || |||||||||||||| || ||||||||||| |||| ||
Sbjct 14271 GCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAGCC 14228
>seq6008
Length=80333
Score = 134 bits (148), Expect = 2e-26
Identities = 151/202 (75%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
||||||||||| || |||||||| |||| |||| ||||||||| ||||| ||||
Sbjct 50479 GGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAGATTAGCACGGTTAATG 50538
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||||||||| | |||||| ||| ||| | || | | || ||||| ||
Sbjct 50539 ATATCAGCCCAGGTATTAATTACACGGCCTTGACTACCAACTACAAATTGGTTGAAATTG 50598
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| || || || ||||| ||||| | ||| | ||||| ||||| || || ||
Sbjct 50599 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 50658
Query 84165 ACTGGCCAAGCAGCCAAGAAAA 84186
|| ||||||||||| | || ||
Sbjct 50659 ACAGGCCAAGCAGCTAGGATAA 50680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571082787476680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |