Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq16707 621 4e-173 seq647 316 2e-81 seq24083 161 1e-34 seq20 161 1e-34 seq574 150 2e-31 seq10199 145 9e-30 seq6008 134 2e-26 >seq16707 Length=103149 Score = 621 bits (688), Expect = 4e-173 Identities = 723/973 (74%), Gaps = 2/973 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| || | Sbjct 22098 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTGATG 22157 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | ||| || ||||||||| || | | || ||||| || Sbjct 22158 ATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGATTGGTTGAAATTG 22217 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 ||||| || ||||| || ||||| || |||| ||| | ||||| |||||||| || || Sbjct 22218 AATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAACCAAATCCCTACT 22277 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || ||||||||||||||||| ||||| | ||||||| ||||| || |||||| ||| Sbjct 22278 ACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAACTAGCATATTGG 22337 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 ||||| | || || || || || ||||| || ||||||||||||||||| || |||||| Sbjct 22338 AAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTTTCTTCCTCTTGA 22397 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 || || ||||||| | || || | ||||| || ||||| | ||| | | ||| Sbjct 22398 CCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTGATCAAACTAGAG 22457 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| |||||| | || |||||||||||||| || || Sbjct 22458 GTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACACCAGCTACACCT 22517 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| |||||||||||||||||||| || |||||||| |||| ||| ||||| Sbjct 22518 AACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACAATCATAAAGTTG 22577 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || || || || | ||||| |||||||||||| ||||| || | ||| || Sbjct 22578 AAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGACCAATAGGGTAA 22637 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 22638 ATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 22697 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | |||||||| ||||||||||| ||| | | |||||| Sbjct 22698 CGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 22757 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | |||||| | |||| || | |||||| || ||||| |||| |||||| || | | | Sbjct 22758 AAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAACAGAT 22817 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || || || | ||| ||||| ||| | |||| | |||| Sbjct 22818 GCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCA 22877 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 ||||| || || ||||||||||| | | |||||||| || |||||||| ||||| ||| Sbjct 22878 CCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCA 22937 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| | | ||| || || || || ||||| ||| || | | || Sbjct 22938 ATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGA-AGTTGCGGTTAATAA 22996 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | || ||||| || | || | |||||| | ||| || | Sbjct 22997 GGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTAT 23056 Query 84944 CCAATCACAGAAG 84956 ||| | |||||| Sbjct 23057 CCAGTTGCAGAAG 23069 >seq647 Length=36880 Score = 316 bits (350), Expect = 2e-81 Identities = 412/566 (73%), Gaps = 3/566 (1%) Strand=Plus/Plus Query 84313 CATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGA 84372 |||||||||| ||||| | ||| | | |||||| || | ||||||||||| ||| || Sbjct 13613 CATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGA 13672 Query 84373 ATAGAGCTCCACCGAATACAC-CAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATG 84431 || | | || |||||||| | |||| | || ||||||||||| | |||||||||||| Sbjct 13673 ATGGGGAGCCGCCGAATACCCACAGCTATACCTAACATGTGAAATGTGTGCATAAGGATG 13732 Query 84432 TTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATG 84491 || || || || |||| || | |||| ||||||| || || ||||| || | ||||| Sbjct 13733 TTGTGCTCAGCATGGAGTACGATCATGAAGTTGAAAGTACCAGAGATTCCTACAGGCATA 13792 Query 84492 CCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCA 84551 |||| ||| ||| |||| || | || || | | ||| ||||||| || |||||| Sbjct 13793 CCATTAGAAAAACTTCCTTAACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCA 13852 Query 84552 ACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCC 84611 || |||| || || |||||| ||| | || ||||||| | ||| | ||||||| Sbjct 13853 ACAAGAGCTGAATATGCAACAACAATCAAAGGTTGCATACCCAAACGGAAGCTAAGTTCC 13912 Query 84612 CATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAA 84671 || ||||||||||||||| | | |||||| || |||||| | |||| || | |||| Sbjct 13913 CACTCACGACCCATGTAACACACTACACCAAGCAAGAAGTGTAGAACAATTAGCTCATAA 13972 Query 84672 GGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGT 84731 || || ||||| |||| |||||| || || ||| |||||||| || || || || || Sbjct 13973 GGACCGCCATTGTATAACCATTCATCAATGGATGCCGCTTCCCAGATCGGGTAAAAGTGC 14032 Query 84732 AGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATG 84791 | ||| ||||| |||| | ||| | | |||| || || || ||||||||||| | Sbjct 14033 AAACCTATAGCTGTAGAAGTAGGATTAATGACACCTGAGATAATATTGTTTCCGTAAAGT 14092 Query 84792 AGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAAT 84851 ||||| |||| || |||||||| ||||| ||| ||| ||||| || ||| ||| ||| Sbjct 14093 AGAGATCCAGAAACAGGCTCACGAATACCATCAGCATCTACTGGAGGAGCAGCAATGAAG 14152 Query 84852 GCAATGATGAA-ACAGACAGTGGCAG 84876 || | || || ||||| ||| |||| Sbjct 14153 GCGAAAATAAATACAGA-AGTTGCAG 14177 >seq24083 Length=1989 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 948 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTAATG 889 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | |||||| ||| ||||| || | | || ||||| || Sbjct 888 ATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACATATTGGTTGAAATTG 829 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||| | ||| | ||||| ||||| || || || Sbjct 828 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 769 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAA 84211 || ||||||||||| | ||| || || | ||||||| ||||| || Sbjct 768 ACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTCAA 722 >seq20 Length=236725 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 78619 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTAATG 78560 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | |||||| ||| ||||| || | | || ||||| || Sbjct 78559 ATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAAATTGGTTGAAATTG 78500 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||| | ||| | ||||| ||||| || || || Sbjct 78499 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 78440 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAA 84211 || ||||||||||| | ||| || || | ||||||| ||||| || Sbjct 78439 ACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTCAA 78393 >seq574 Length=41708 Score = 150 bits (166), Expect = 2e-31 Identities = 157/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 2477 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGGTTAATG 2418 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | |||||| ||| ||||| || | | || ||||| || Sbjct 2417 ATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGATTGGTTGAAATTG 2358 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||| | ||| | ||||| ||||| || || || Sbjct 2357 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 2298 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTG 84190 || ||||||||||| | ||| || || Sbjct 2297 ACAGGCCAAGCAGCTAGGAAGAAATG 2272 >seq10199 Length=21994 Score = 145 bits (160), Expect = 9e-30 Identities = 201/284 (71%), Gaps = 22/284 (8%) Strand=Plus/Minus Query 84015 ACTTCCATACCAAGCCCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTT 84074 ||||| |||||||| ||||| |||| | ||| |||||||| || | |||||| | Sbjct 14489 ACTTCGATACCAAGATTAGCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGGCCT 14430 Query 84075 TGGCTATCGACAAGACTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTA 84134 || ||||| || | | |||||| ||||| || || || ||||| ||||| Sbjct 14429 TGACTATCAACTACA----GATTGA--------CCATTTAGGTTGAAAGCCATAGTGCTG 14382 Query 84135 ACACCCAGAGCAGCAAACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGA 84194 | ||| | ||||| ||||| || || || || |||||||||| | ||| || || | | Sbjct 14381 ATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGTTAGGAAGAAATGTAAA 14322 Query 84195 GAACGACTATTGTTGAAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCA 84254 ||| || |||||||| |||||| |||||||| | ||||| |||||| Sbjct 14321 GAAAGAGAGTTGTTGAAACTAGCATATTGGAAGATCAA----------TAGCCATGAGCA 14272 Query 84255 GCAACAATATTATAAGTTTCCTCTTCTTGACCGAACTTGTAACC 84298 || || |||||||||||||| || ||||||||||| |||| || Sbjct 14271 GCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAGCC 14228 >seq6008 Length=80333 Score = 134 bits (148), Expect = 2e-26 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| |||| |||| ||||||||| ||||| |||| Sbjct 50479 GGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAGATTAGCACGGTTAATG 50538 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||||||||| | |||||| ||| ||| | || | | || ||||| || Sbjct 50539 ATATCAGCCCAGGTATTAATTACACGGCCTTGACTACCAACTACAAATTGGTTGAAATTG 50598 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| ||||| | ||| | ||||| ||||| || || || Sbjct 50599 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACT 50658 Query 84165 ACTGGCCAAGCAGCCAAGAAAA 84186 || ||||||||||| | || || Sbjct 50659 ACAGGCCAAGCAGCTAGGATAA 50680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571082787476680