Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq16707 491 1e-134 seq647 237 5e-58 seq24083 161 3e-35 seq20 161 3e-35 seq574 154 4e-33 seq6008 125 2e-24 seq6733 120 9e-23 seq10199 105 2e-18 >seq16707 Length=103149 Score = 491 bits (544), Expect = 1e-134 Identities = 700/977 (72%), Gaps = 6/977 (1%) Strand=Plus/Minus Query 25811 TGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCC 25870 ||| | || || || || |||||||| || | ||||||||||| || | ||||| || Sbjct 23059 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCT 23000 Query 25871 TGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGA 25929 |||| | | || ||| | ||| ||||| | ||||||||||| || || || ||||| Sbjct 22999 ACCTTATTAACCGCAACTTC-TGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGA 22941 Query 25930 TATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATC 25989 ||| ||||| || |||||||| ||||| || || ||| | |||||||||||||| || || Sbjct 22940 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTC 22881 Query 25990 AGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGC 26049 || || | | || | ||| || || || | || |||||||| ||||||||||| Sbjct 22880 TGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGC 22821 Query 26050 TGGCA-CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACT 26108 |||| | | || || ||| ||||||||||||| || ||| | || ||| | | |||| Sbjct 22820 -GGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACT 22762 Query 26109 TCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGACTAGGAA 26168 ||||| | || ||||| ||| || | |||||||||| || | | || || | Sbjct 22761 TCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTA 22702 Query 26169 TGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCT 26228 || | || ||||| |||||||||| |||| || | | || ||| || || |||| Sbjct 22701 TGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCT 22642 Query 26229 TAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTA 26288 | |||| ||| | || ||||| ||||| |||||| |||||| | || || ||||||| Sbjct 22641 TGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTA 22582 Query 26289 CTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCATTCCATA 26348 |||| ||||||||| | |||||||| ||||| ||||| || || ||||| ||||| || | Sbjct 22581 CTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACA 22522 Query 26349 TGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGG 26408 || ||||| ||||| || ||||| || | || ||| ||||||||| || |||| Sbjct 22521 TGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGG 22462 Query 26409 TTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGCTATAAGT 26468 | || || | || ||||| || || | | || ||| | || || | | Sbjct 22461 TAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGAT 22402 Query 26469 TTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTAA 26528 |||| ||||| ||||| || ||||||||||| || || || || || ||||| |||||| Sbjct 22401 TTGGTCAAGAGGAAGAAACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAA 22342 Query 26529 TTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGC 26588 | || || ||||| |||||||| ||| |||||| | || ||||| | ||| |||||| Sbjct 22341 TCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGC 22282 Query 26589 CGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATG 26648 | || || || || ||| | || || | ||||| | || ||||| || || ||||| | Sbjct 22281 CTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACG 22222 Query 26649 GTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGATAATACCTACATGGGCT 26707 | || || || ||||| || ||||| ||| | || | | || || ||| |||||| Sbjct 22221 GATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTA-ATACTTGGGCT 22163 Query 26708 GATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAAC 26767 ||| | | ||||| ||||| || || | ||||||||||| || ||||||||||||||| Sbjct 22162 GATATCATCAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAAC 22103 Query 26768 TTTCCACTTGACTTAGC 26784 || || || ||| |||| Sbjct 22102 TTCCCTCTAGACCTAGC 22086 >seq647 Length=36880 Score = 237 bits (262), Expect = 5e-58 Identities = 373/525 (71%), Gaps = 7/525 (1%) Strand=Plus/Minus Query 25895 TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTT 25954 ||||| | |||||||| || || || || |||||| ||||| || |||||||| ||| Sbjct 14163 TTTATTTTCGCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGCCTGTT 14104 Query 25955 TCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAG-CAGTCGTCCCCTCCTCTAA 26013 || || || || | |||||||||||||| || ||||| | || | ||| | |||| Sbjct 14103 TCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTA-CTTCTAC 14045 Query 26014 CGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCACAC-TGGACGAGTGGCTAT 26072 || || || | || |||||||||||||||||||| |||| | | || || ||| ||| Sbjct 14044 AGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGC-GGCATCCATTGATGAATGGTTAT 13986 Query 26073 ACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATG 26132 |||||||||| || ||| | || ||| | | |||||||| | || |||| || Sbjct 13985 ACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTGTTACA 13926 Query 26133 CAGGGAGACAGTGGGAACT-ATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCA 26191 || | |||||||||| | ||| | | | || ||| ||| | ||| |||||||| Sbjct 13925 TGGGTCGTGAGTGGGAACTTAGCTTCC-GTTTGGGTATGCAACCTTTGATTGTTGTTGCA 13867 Query 26192 TATACAGCACCACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGG 26251 ||| |||| | | | || ||| || || ||||| | || || | || |||| Sbjct 13866 TATTCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGA 13807 Query 26252 AGTTTTAGTGATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTC 26311 |||||| | |||| |||||| | || |||||||||||||| ||||| ||| ||||| || Sbjct 13806 AGTTTTTCTAATGGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTACTC 13747 Query 26312 CAAGCAGAACATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTG-GGGTTTT 26370 || || || || || || || |||||| |||| || ||| ||| | |||| |||| || Sbjct 13746 CATGCTGAGCACAACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTATT 13687 Query 26371 CGGTGGAGCTCTTTTCGCTGCTATGCACGGAAGTTTGGTTACTTC 26415 ||| || | | ||| ||||||||| || |||||| ||||| Sbjct 13686 CGGCGGCTCCCCATTCAGTGCTATGCATGGTTCTTTGGTAACTTC 13642 >seq24083 Length=1989 Score = 161 bits (178), Expect = 3e-35 Identities = 184/246 (75%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 26540 GCGAGTTTT-AATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGG 26598 || |||||| || ||| |||||| | |||||||| || ||| ||||||| || || || Sbjct 715 GCAAGTTTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGG 774 Query 26599 CATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTT 26658 || ||| | || || | |||||| |||| ||||| || |||||||||||||| || || Sbjct 775 TATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTT 834 Query 26659 TAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAA 26718 ||||| | ||||| ||| | | || |||| ||| ||||||||| | | || Sbjct 835 CAACCAATATGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAA 894 Query 26719 CCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGA 26778 ||| ||||| || || | ||||||||||| || ||||||||||||||||| || || || Sbjct 895 CCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 954 Query 26779 CTTAGC 26784 | |||| Sbjct 955 CCTAGC 960 >seq20 Length=236725 Score = 161 bits (178), Expect = 3e-35 Identities = 184/246 (75%), Gaps = 1/246 (0%) Strand=Plus/Plus Query 26540 GCGAGTTTT-AATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGGCCGGTTGTTGG 26598 || |||||| || ||| |||||| | |||||||| || ||| ||||||| || || || Sbjct 78386 GCAAGTTTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGG 78445 Query 26599 CATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTT 26658 || ||| | || || | |||||| |||| ||||| || |||||||||||||| || || Sbjct 78446 TATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTT 78505 Query 26659 TAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAA 26718 ||||| | ||||| ||| | | || |||| ||| ||||||||| | | || Sbjct 78506 CAACCAATTTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAA 78565 Query 26719 CCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGA 26778 ||| ||||| || || | ||||||||||| || ||||||||||||||||| || || || Sbjct 78566 CCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 78625 Query 26779 CTTAGC 26784 | |||| Sbjct 78626 CCTAGC 78631 >seq574 Length=41708 Score = 154 bits (170), Expect = 4e-33 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 26567 CATTTCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGC 26626 |||||||| || ||| ||||||| || || || || ||| | || || | |||||| || Sbjct 2272 CATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGC 2331 Query 26627 ACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGA 26686 || ||||| || |||||||||||||| || || ||||| || ||||| ||| | | || Sbjct 2332 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGC 2391 Query 26687 AAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATG 26746 |||| ||| ||||||||| | | ||||| ||||| || || | ||||||||| Sbjct 2392 CGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATG 2451 Query 26747 CACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784 || || ||||||||||||||||| || || ||| |||| Sbjct 2452 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 2489 >seq6008 Length=80333 Score = 125 bits (138), Expect = 2e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 26576 CTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCA 26635 || ||| ||||||| || || || || ||| | || || | |||||| |||| ||||| Sbjct 50675 CTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCT 50616 Query 26636 TTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATA 26695 || |||||||||||||| || || ||||| | ||||| | | | | || |||| Sbjct 50615 TTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGGTAGTCAAGGCCGTGTAATT 50556 Query 26696 CCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGT 26755 ||| ||||||||| | | ||||| ||||| || || | ||||| |||| || ||| Sbjct 50555 AATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGTAAGTTGTGCATGAACGT 50496 Query 26756 AATGCTCATAACTTTCCACTTGACTTAGC 26784 |||||||||||||| || || ||| |||| Sbjct 50495 AATGCTCATAACTTCCCTCTAGACCTAGC 50467 >seq6733 Length=89479 Score = 120 bits (132), Expect = 9e-23 Identities = 213/304 (70%), Gaps = 5/304 (2%) Strand=Plus/Plus Query 25823 ACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTTATGATACCCTGCTTACTCGCA 25882 ||||| |||| ||| || | ||| |||| || || | ||||| || |||| | | Sbjct 8755 ACTGAAAACCATCTTTACATTGGACGGTTTGGTGTTTTGATGATCCCTACCTTATTAACC 8814 Query 25883 GCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACCGCCTGTAGATATAGATGGCAT 25941 || ||| | ||| ||||| | |||||||| || || || || |||||||| ||||| || Sbjct 8815 GCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGGAT 8873 Query 25942 ACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATAATATCAGGAGCAGTCGT 26001 |||||||| ||||| || || || | || ||||||||||| || ||||| || | | Sbjct 8874 TCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCAGGTGCCATTAT 8933 Query 26002 CCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATCTGGGAAGCTGGCA-CACTGG 26060 || | ||| || || || | || |||||||| |||| |||||| |||| | | | Sbjct 8934 TCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCT-GGAAGC-GGCATCCGTTG 8991 Query 26061 ACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATCTTCCACTTCTTAATAGGAG 26120 | || ||| | ||| || || || ||| | | ||| | | ||||||||| | || | Sbjct 8992 ATGAATGGTGGTCCAACGGTGGTCCTTATGAGATAATTGTTCTACACTTCTTACTTGGTG 9051 Query 26121 TAGC 26124 |||| Sbjct 9052 TAGC 9055 >seq10199 Length=21994 Score = 105 bits (116), Expect = 2e-18 Identities = 141/198 (71%), Gaps = 10/198 (5%) Strand=Plus/Plus Query 26453 AATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGG 26512 ||| | ||||| | || || ||||| ||||| || |||||||| || ||||| || || Sbjct 14222 AATAAAGGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGC 14281 Query 26513 TACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTC 26572 || || || || || ||||| ||||| || ||| | |||| | |||||| Sbjct 14282 TA----------TTGATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTC 14331 Query 26573 TTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATG 26632 || || || ||||||| || || || || ||| | || || | |||||| |||| ||| Sbjct 14332 TTCCTAACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATG 14391 Query 26633 GCATTTAACCTAAATGGT 26650 || || |||||||||||| Sbjct 14392 GCTTTCAACCTAAATGGT 14409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146679841970904