Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq16707 547 2e-151 seq647 264 3e-66 seq6733 143 8e-30 seq574 134 4e-27 seq24083 132 1e-26 seq20 132 1e-26 seq4124 109 2e-19 seq6008 100 9e-17 seq10199 93.3 1e-14 >seq16707 Length=103149 Score = 547 bits (606), Expect = 2e-151 Identities = 714/983 (73%), Gaps = 6/983 (1%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 22082 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 22141 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 | |||||||| | || ||||||||||| | || | || | | |||||| || Sbjct 22142 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 22201 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 || || ||||| || || ||||| ||||| ||||||||||| | || | ||| || Sbjct 22202 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 22261 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208 | ||| || | || ||||||||||||| |||||| |||||| || || || Sbjct 22262 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 22321 Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268 ||| |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 22322 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 22381 Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328 || ||||| ||||| || ||| | || || | || |||||| |||| ||||| Sbjct 22382 AGTTTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 22441 Query 36329 ACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 36385 | || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 22442 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 22498 Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445 |||||| || || ||||| | ||| || || |||||||||||||| || || |||||||| Sbjct 22499 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 22558 Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505 || |||| |||||| |||||||| || || || || | ||||||||||||||||||||| Sbjct 22559 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 22618 Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565 ||||| |||| |||||| | ||||| |||||| || ||||||||||| |||||||| Sbjct 22619 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 22678 Query 36566 AGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAA 36625 || ||| ||||| || | |||||| || | |||| |||||||| | || |||| Sbjct 22679 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 22738 Query 36626 GTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATA 36685 ||| | | ||||| | ||||| | ||||| || | ||| || || || || || Sbjct 22739 ATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 22798 Query 36686 TAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTT 36745 |||||| || || | | ||| ||||||||||||||||| ||||| | ||| || || Sbjct 22799 TAACCATTCATCAACAGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGC 22858 Query 36746 CGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGAC 36805 || | || | || || |||||||| || |||||||| || ||||| | || || || Sbjct 22859 AGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAAC 22918 Query 36806 AGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGC 36865 |||||||||||||||||| ||||| || ||||| ||||| | || || || | |||| | Sbjct 22919 AGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATAC 22978 Query 36866 TGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCG 36925 | ||| ||||| | | ||||||||| | || || ||||| || | || || || Sbjct 22979 AGAAGTTGCGGTTAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 23038 Query 36926 GTTGTTTGTACTTGTAACCCAGT 36948 ||| | || || || | ||||| Sbjct 23039 GTTTTCGGTGCTAGTTATCCAGT 23061 >seq647 Length=36880 Score = 264 bits (292), Expect = 3e-66 Identities = 356/492 (72%), Gaps = 3/492 (1%) Strand=Plus/Plus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCC-CTGCAACACCGAGCATATGGAA 36415 || ||||||||| |||| | || |||||||||| | || | ||| | ||| || || Sbjct 13657 CCATGCATAGCACTGAATGGGGAGCCGCCGAATACCCACAGCTATACCTAACATGTGAAA 13716 Query 36416 CGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGA 36475 | ||||||||||| ||||| || || || | || | ||| || |||||||| || || Sbjct 13717 TGTGTGCATAAGGATGTTGTGCTCAGCATGGAGTACGATCATGAAGTTGAAAGTACCAGA 13776 Query 36476 AATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATAC 36535 || || | ||||||||||| ||| ||||| |||| |||| ||||||| ||||| || Sbjct 13777 GATTCCTACAGGCATACCATTAGAAAAACTTCCTTAACCAATTGGGTAGATCAAGAAAAC 13836 Query 36536 AGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAG 36595 |||| || ||||||||| | |||||||| || ||| ||| | || |||||| | Sbjct 13837 AGCAGTAGCAGCTGCAACAAGAGCTGAATATGCAACAACAATCAAAGGTTGCATACCCAA 13896 Query 36596 TCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAA 36655 | | ||||||||||| | || |||| |||| | ||||| | ||||| | Sbjct 13897 ACGGAAGCTAAGTTCCCACTCACGACCCATGTAACACACTACACCAAGCAAGAAGTGTAG 13956 Query 36656 CACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCA 36715 ||||| || | ||| || || || || |||||||| || || | || ||| |||||||| Sbjct 13957 AACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAATGGATGCCGCTTCCCA 14016 Query 36716 GATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTG-CCCCAGAGATGA 36774 ||| ||||| ||||| | ||| || || | || | | ||| | || | || ||||| | Sbjct 14017 GATCGGGTAAAAGTGCAAACCTATAGCTGTAGAAG-TAGGATTAATGACACCTGAGATAA 14075 Query 36775 TGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGG 36834 | |||||||| || |||| | ||| || |||||||||||||||||||| ||| || | Sbjct 14076 TATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAGCATCTACTG 14135 Query 36835 GAGGCGCAGCAA 36846 |||| ||||||| Sbjct 14136 GAGGAGCAGCAA 14147 >seq6733 Length=89479 Score = 143 bits (158), Expect = 8e-30 Identities = 218/309 (71%), Gaps = 1/309 (0%) Strand=Plus/Minus Query 36601 AACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAA 36660 ||||||||| || | || ||| |||| | | ||||| | ||||| | |||| Sbjct 9087 AACTAAGTTTTCACTCACGATCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 9028 Query 36661 TGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTG 36720 | | | ||| || || ||||| | |||| || || | || ||| |||||| |||||| Sbjct 9027 TTATCTCATAAGGACCACCGTTGGACCACCATTCATCAACGGATGCCGCTTCC-AGATTG 8969 Query 36721 GGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGT 36780 |||| ||||| | ||| || || || | || | || || || ||||| || |||| Sbjct 8968 GGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGT 8909 Query 36781 TTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCG 36840 ||||||| |||| | ||| || |||||||||||||| ||||| ||||| || ||||| | Sbjct 8908 TTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATCCCATCAATATCTACTGGAGGAG 8849 Query 36841 CAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTA 36900 |||||| || || || | |||| | | ||| ||||| | | ||||||||| | | Sbjct 8848 CAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTTAATAAGGTAGGGATCATCAAAA 8789 Query 36901 CCCCAAACC 36909 | ||||||| Sbjct 8788 CACCAAACC 8780 >seq574 Length=41708 Score = 134 bits (148), Expect = 4e-27 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||||||| || |||||||| || || ||||| ||||||||||||||||| || | | Sbjct 2489 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2430 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||||||||| || |||||||| || | || | || | |||||| || || Sbjct 2429 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGAT 2370 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152 || ||||| || || || || || || |||||||||||| || || | ||| || | | Sbjct 2369 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 2310 Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 36194 || || | || ||||||||||| ||||||||||||||| Sbjct 2309 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 2268 >seq24083 Length=1989 Score = 132 bits (146), Expect = 1e-26 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 964 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 905 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 | |||||||||| || |||||||| || | || | || | |||||| || Sbjct 904 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTAC 845 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 | || ||||| || || || || || || |||||||||||| || || | ||| || Sbjct 844 ATATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 785 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 36194 | ||| || | || ||||||||||| ||||||||||||||| Sbjct 784 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 739 >seq20 Length=236725 Score = 132 bits (146), Expect = 1e-26 Identities = 165/226 (73%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || | Sbjct 78635 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 78576 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 | |||||||||| || |||||||| || | || | || | |||||| || Sbjct 78575 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTAC 78516 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 | || ||||| || || || || || || |||||||||||| || || | ||| || Sbjct 78515 AAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 78456 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 36194 | ||| || | || ||||||||||| ||||||||||||||| Sbjct 78455 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 78410 >seq4124 Length=71480 Score = 109 bits (120), Expect = 2e-19 Identities = 101/128 (79%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 36486 GGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCT 36545 |||||||||||||| ||||| ||||| |||| ||||||| ||||| ||||||| || Sbjct 19121 GGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAATAGCA 19180 Query 36546 GCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTA 36605 ||||||||||| |||||||| || ||| ||||| | | |||||| | | ||||| Sbjct 19181 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAAGTCGCATACCCAAACGGAAACTA 19240 Query 36606 AGTTCCCA 36613 |||||||| Sbjct 19241 AGTTCCCA 19248 >seq6008 Length=80333 Score = 100 bits (110), Expect = 9e-17 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028 ||| |||||||| || |||||||| || || ||||| ||||||| ||||| ||| || | Sbjct 50463 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAG 50522 Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088 | |||||||||| || |||||||| || | || | || | | |||| || Sbjct 50523 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTACCAACTAC 50582 Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148 | || ||||| || || || || || || |||||||||||| || || | ||| || Sbjct 50583 AAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 50642 Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGA 36183 | ||| || | || ||||||||||| |||| Sbjct 50643 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGA 50677 >seq10199 Length=21994 Score = 93.3 bits (102), Expect = 1e-14 Identities = 135/191 (71%), Gaps = 10/191 (5%) Strand=Plus/Minus Query 36108 CCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACG 36167 || || || || |||||||||||| || || | ||| || | ||| || | || Sbjct 14408 CCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACA 14349 Query 36168 GGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAG 36227 |||||||||| ||||||||||||||| | || || || |||||||| |||||| Sbjct 14348 GGCCAAGCAGTTAGGAAGAAATGTAAAGAAAGAGAGTTGTTGAAACTAGCATATTGGAAG 14289 Query 36228 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCG 36287 || ||| ||||||||||| || || || ||||| || ||||| ||||| ||| Sbjct 14288 AT--------CAA--TAGCCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCG 14239 Query 36288 AATTTATATCC 36298 ||| | || || Sbjct 14238 AATCTGTAGCC 14228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150406659032234