Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq16707 547 2e-151
seq647 264 3e-66
seq6733 143 8e-30
seq574 134 4e-27
seq24083 132 1e-26
seq20 132 1e-26
seq4124 109 2e-19
seq6008 100 9e-17
seq10199 93.3 1e-14
>seq16707
Length=103149
Score = 547 bits (606), Expect = 2e-151
Identities = 714/983 (73%), Gaps = 6/983 (1%)
Strand=Plus/Plus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || |
Sbjct 22082 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 22141
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088
| |||||||| | || ||||||||||| | || | || | | |||||| ||
Sbjct 22142 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTAC 22201
Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148
|| || ||||| || || ||||| ||||| ||||||||||| | || | ||| ||
Sbjct 22202 AGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 22261
Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATT 36208
| ||| || | || ||||||||||||| |||||| |||||| || || ||
Sbjct 22262 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 22321
Query 36209 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATA 36268
||| |||||||| |||||||| | || ||||| || |||||||| || ||||| |||||
Sbjct 22322 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 22381
Query 36269 CGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTC 36328
|| ||||| ||||| || ||| | || || | || |||||| |||| |||||
Sbjct 22382 AGTTTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 22441
Query 36329 ACGAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 36385
| || || | |||| || |||| || ||||||||| ||||| | || ||
Sbjct 22442 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 22498
Query 36386 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 36445
|||||| || || ||||| | ||| || || |||||||||||||| || || ||||||||
Sbjct 22499 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 22558
Query 36446 AAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACT 36505
|| |||| |||||| |||||||| || || || || | |||||||||||||||||||||
Sbjct 22559 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 22618
Query 36506 CCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATA 36565
||||| |||| |||||| | ||||| |||||| || ||||||||||| ||||||||
Sbjct 22619 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 22678
Query 36566 AGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAA 36625
|| ||| ||||| || | |||||| || | |||| |||||||| | || ||||
Sbjct 22679 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 22738
Query 36626 GTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATA 36685
||| | | ||||| | ||||| | ||||| || | ||| || || || || ||
Sbjct 22739 ATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTA 22798
Query 36686 TAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTT 36745
|||||| || || | | ||| ||||||||||||||||| ||||| | ||| || ||
Sbjct 22799 TAACCATTCATCAACAGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGC 22858
Query 36746 CGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGAC 36805
|| | || | || || |||||||| || |||||||| || ||||| | || || ||
Sbjct 22859 AGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAAC 22918
Query 36806 AGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGC 36865
|||||||||||||||||| ||||| || ||||| ||||| | || || || | |||| |
Sbjct 22919 AGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATAC 22978
Query 36866 TGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCG 36925
| ||| ||||| | | ||||||||| | || || ||||| || | || || ||
Sbjct 22979 AGAAGTTGCGGTTAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACG 23038
Query 36926 GTTGTTTGTACTTGTAACCCAGT 36948
||| | || || || | |||||
Sbjct 23039 GTTTTCGGTGCTAGTTATCCAGT 23061
>seq647
Length=36880
Score = 264 bits (292), Expect = 3e-66
Identities = 356/492 (72%), Gaps = 3/492 (1%)
Strand=Plus/Plus
Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCC-CTGCAACACCGAGCATATGGAA 36415
|| ||||||||| |||| | || |||||||||| | || | ||| | ||| || ||
Sbjct 13657 CCATGCATAGCACTGAATGGGGAGCCGCCGAATACCCACAGCTATACCTAACATGTGAAA 13716
Query 36416 CGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGA 36475
| ||||||||||| ||||| || || || | || | ||| || |||||||| || ||
Sbjct 13717 TGTGTGCATAAGGATGTTGTGCTCAGCATGGAGTACGATCATGAAGTTGAAAGTACCAGA 13776
Query 36476 AATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATAC 36535
|| || | ||||||||||| ||| ||||| |||| |||| ||||||| ||||| ||
Sbjct 13777 GATTCCTACAGGCATACCATTAGAAAAACTTCCTTAACCAATTGGGTAGATCAAGAAAAC 13836
Query 36536 AGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAG 36595
|||| || ||||||||| | |||||||| || ||| ||| | || |||||| |
Sbjct 13837 AGCAGTAGCAGCTGCAACAAGAGCTGAATATGCAACAACAATCAAAGGTTGCATACCCAA 13896
Query 36596 TCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAA 36655
| | ||||||||||| | || |||| |||| | ||||| | ||||| |
Sbjct 13897 ACGGAAGCTAAGTTCCCACTCACGACCCATGTAACACACTACACCAAGCAAGAAGTGTAG 13956
Query 36656 CACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCA 36715
||||| || | ||| || || || || |||||||| || || | || ||| ||||||||
Sbjct 13957 AACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAATGGATGCCGCTTCCCA 14016
Query 36716 GATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTG-CCCCAGAGATGA 36774
||| ||||| ||||| | ||| || || | || | | ||| | || | || ||||| |
Sbjct 14017 GATCGGGTAAAAGTGCAAACCTATAGCTGTAGAAG-TAGGATTAATGACACCTGAGATAA 14075
Query 36775 TGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGG 36834
| |||||||| || |||| | ||| || |||||||||||||||||||| ||| || |
Sbjct 14076 TATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAGCATCTACTG 14135
Query 36835 GAGGCGCAGCAA 36846
|||| |||||||
Sbjct 14136 GAGGAGCAGCAA 14147
>seq6733
Length=89479
Score = 143 bits (158), Expect = 8e-30
Identities = 218/309 (71%), Gaps = 1/309 (0%)
Strand=Plus/Minus
Query 36601 AACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAA 36660
||||||||| || | || ||| |||| | | ||||| | ||||| | ||||
Sbjct 9087 AACTAAGTTTTCACTCACGATCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 9028
Query 36661 TGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTG 36720
| | | ||| || || ||||| | |||| || || | || ||| |||||| ||||||
Sbjct 9027 TTATCTCATAAGGACCACCGTTGGACCACCATTCATCAACGGATGCCGCTTCC-AGATTG 8969
Query 36721 GGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGT 36780
|||| ||||| | ||| || || || | || | || || || ||||| || ||||
Sbjct 8968 GGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGT 8909
Query 36781 TTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCG 36840
||||||| |||| | ||| || |||||||||||||| ||||| ||||| || ||||| |
Sbjct 8908 TTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATCCCATCAATATCTACTGGAGGAG 8849
Query 36841 CAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTA 36900
|||||| || || || | |||| | | ||| ||||| | | ||||||||| | |
Sbjct 8848 CAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTTAATAAGGTAGGGATCATCAAAA 8789
Query 36901 CCCCAAACC 36909
| |||||||
Sbjct 8788 CACCAAACC 8780
>seq574
Length=41708
Score = 134 bits (148), Expect = 4e-27
Identities = 163/222 (73%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032
|||||||| || |||||||| || || ||||| ||||||||||||||||| || | |
Sbjct 2489 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2430
Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092
|||||||||| || |||||||| || | || | || | |||||| || ||
Sbjct 2429 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGAT 2370
Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 36152
|| ||||| || || || || || || |||||||||||| || || | ||| || | |
Sbjct 2369 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 2310
Query 36153 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 36194
|| || | || ||||||||||| |||||||||||||||
Sbjct 2309 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 2268
>seq24083
Length=1989
Score = 132 bits (146), Expect = 1e-26
Identities = 165/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || |
Sbjct 964 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 905
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088
| |||||||||| || |||||||| || | || | || | |||||| ||
Sbjct 904 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTAC 845
Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148
| || ||||| || || || || || || |||||||||||| || || | ||| ||
Sbjct 844 ATATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 785
Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 36194
| ||| || | || ||||||||||| |||||||||||||||
Sbjct 784 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 739
>seq20
Length=236725
Score = 132 bits (146), Expect = 1e-26
Identities = 165/226 (73%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || |||||||| || || ||||| ||||||||||||||||| || |
Sbjct 78635 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 78576
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088
| |||||||||| || |||||||| || | || | || | |||||| ||
Sbjct 78575 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTAC 78516
Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148
| || ||||| || || || || || || |||||||||||| || || | ||| ||
Sbjct 78515 AAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 78456
Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 36194
| ||| || | || ||||||||||| |||||||||||||||
Sbjct 78455 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 78410
>seq4124
Length=71480
Score = 109 bits (120), Expect = 2e-19
Identities = 101/128 (79%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 36486 GGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCT 36545
|||||||||||||| ||||| ||||| |||| ||||||| ||||| ||||||| ||
Sbjct 19121 GGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAATAGCA 19180
Query 36546 GCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTA 36605
||||||||||| |||||||| || ||| ||||| | | |||||| | | |||||
Sbjct 19181 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAAGTCGCATACCCAAACGGAAACTA 19240
Query 36606 AGTTCCCA 36613
||||||||
Sbjct 19241 AGTTCCCA 19248
>seq6008
Length=80333
Score = 100 bits (110), Expect = 9e-17
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 35969 AGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAA 36028
||| |||||||| || |||||||| || || ||||| ||||||| ||||| ||| || |
Sbjct 50463 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAG 50522
Query 36029 GTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGAC 36088
| |||||||||| || |||||||| || | || | || | | |||| ||
Sbjct 50523 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTACCAACTAC 50582
Query 36089 TGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGT 36148
| || ||||| || || || || || || |||||||||||| || || | ||| ||
Sbjct 50583 AAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 50642
Query 36149 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGA 36183
| ||| || | || ||||||||||| ||||
Sbjct 50643 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGA 50677
>seq10199
Length=21994
Score = 93.3 bits (102), Expect = 1e-14
Identities = 135/191 (71%), Gaps = 10/191 (5%)
Strand=Plus/Minus
Query 36108 CCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACG 36167
|| || || || |||||||||||| || || | ||| || | ||| || | ||
Sbjct 14408 CCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACA 14349
Query 36168 GGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAG 36227
|||||||||| ||||||||||||||| | || || || |||||||| ||||||
Sbjct 14348 GGCCAAGCAGTTAGGAAGAAATGTAAAGAAAGAGAGTTGTTGAAACTAGCATATTGGAAG 14289
Query 36228 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCG 36287
|| ||| ||||||||||| || || || ||||| || ||||| ||||| |||
Sbjct 14288 AT--------CAA--TAGCCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCG 14239
Query 36288 AATTTATATCC 36298
||| | || ||
Sbjct 14238 AATCTGTAGCC 14228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150406659032234
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |