Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq16707 569 6e-158 seq647 275 2e-69 seq6733 149 2e-31 seq574 145 2e-30 seq24083 143 8e-30 seq20 143 8e-30 seq10199 131 5e-26 seq6008 114 4e-21 seq4124 82.4 2e-11 >seq16707 Length=103149 Score = 569 bits (630), Expect = 6e-158 Identities = 723/991 (73%), Gaps = 8/991 (1%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 22082 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 22141 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307 || |||||||| | || ||| |||||||| || | | ||| |||| ||||| Sbjct 22142 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAAC 22198 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || || || ||||| || || ||||| ||||| ||||||||||| || || | || Sbjct 22199 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 22258 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427 || | ||| || | || || ||||||| ||||| |||||| |||||| ||| || Sbjct 22259 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 22318 Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487 |||||| |||||||| |||||||| | || ||||| || |||||||| || ||||| || Sbjct 22319 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 22378 Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547 ||| |||||||||||||| || ||| | || || | || ||| |||| || Sbjct 22379 ATAAGTTTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 22438 Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607 ||| | || | ||| || || | |||||||||||| ||| | | || || Sbjct 22439 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 22498 Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667 |||||| ||||| ||||| | |||||| || |||||||||||||| || || |||||||| Sbjct 22499 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 22558 Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727 |||||| | ||||||||| ||||||||||| || || | ||||||||||||| |||||| Sbjct 22559 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 22618 Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAAT 5786 ||| || || | |||||| | || || || | |||| || || ||||| || ||||||| Sbjct 22619 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGAAT 22677 Query 5787 ATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCA 5846 |||| || |||||| || ||||| || | | | |||| |||||||| | || |||| Sbjct 22678 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCA 22737 Query 5847 AGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGT 5906 ||| || | ||||| | |||||| | || | || | || || || ||||||| Sbjct 22738 TATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGT 22797 Query 5907 AAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGT 5966 | | ||||||||| | | || ||||||||||| || || ||||| || || || || Sbjct 22798 ATAACCATTCATCAACAGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTG 22857 Query 5967 TGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGA 6026 || | || | || ||| || || || || |||||||| || |||| ||| || | | Sbjct 22858 CAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAA 22917 Query 6027 CGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATG 6086 | || ||||| || || || || || ||||| || ||||| | ||| || | |||||| Sbjct 22918 CAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATA 22977 Query 6087 CAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGC 6146 ||| |||||||||||| | | || ||||| || ||||| ||||| || | || || | Sbjct 22978 CAGAAGTTGCGGTTAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGAC 23037 Query 6147 GGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||| | ||||||||| | ||||| ||||| Sbjct 23038 GGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 23068 >seq647 Length=36880 Score = 275 bits (304), Expect = 2e-69 Identities = 389/541 (72%), Gaps = 7/541 (1%) Strand=Plus/Plus Query 5563 AGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCC-CAGCAA 5621 |||||| || | | |||||||||||| ||| | || |||||||||| |||| | Sbjct 13641 AGAAGTTACCAAAGAACCATGCATAGCACTGAATGGGGAGCCGCCGAATACCCACAGCTA 13700 Query 5622 CACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAA 5681 ||| | |||||| || | ||||||||||| ||||| || || |||| ||||| ||| | Sbjct 13701 TACCTAACATGTGAAATGTGTGCATAAGGATGTTGTGCTCAGCATGGAGTACGATCATGA 13760 Query 5682 AGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAG 5741 |||| |||||||||||||| || | ||||||||||| | |||||||| | || | | Sbjct 13761 AGTTGAAAGTACCAGAGATTCCTACAGGCATACCATTAGAAAAACTTCCTTAACCAATTG 13820 Query 5742 GGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATC 5800 |||| | || || || | |||| || || ||||| | ||||||||||| || |||| Sbjct 13821 GGTAGATCAAGAAAACAGCAGTA-GCAGCTGCAACAAGAGCTGAATATGCAACAACAATC 13879 Query 5801 CATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATA 5860 | ||| |||| || || | | | ||||||||||| | || |||| |||| | | | Sbjct 13880 AAAGGTTGCATACCCAAACGGAAGCTAAGTTCCCACTCACGACCCATGTAACACACTACA 13939 Query 5861 CCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCG 5920 |||| | |||||| | || | || | || || || |||||||| | ||||||||| Sbjct 13940 CCAAGCAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCA 13999 Query 5921 A--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTA 5978 | ||| || ||||||||||| || || ||||| || || || || | || | || Sbjct 14000 ATGGAT--GCCGCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGTAGAAGTAGGAT 14057 Query 5979 CAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTA 6038 || | | ||||| || || |||||||| || ||||||||||| | || || ||||| | Sbjct 14058 TAATGACACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAA 14117 Query 6039 TGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGG 6098 | || || || ||||| || ||||| | ||| || || |||||| ||| |||||| | Sbjct 14118 TACCATCAGCATCTACTGGAGGAGCAGCAATGAAGGCGAAAATAAATACAGAAGTTGCAG 14177 Query 6099 T 6099 | Sbjct 14178 T 14178 >seq6733 Length=89479 Score = 149 bits (164), Expect = 2e-31 Identities = 249/357 (70%), Gaps = 5/357 (1%) Strand=Plus/Minus Query 5823 AACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGA 5882 ||||||||| || | || ||| |||| || | ||||| | |||||| | || | Sbjct 9087 AACTAAGTTTTCACTCACGATCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 9028 Query 5883 CGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGAT 5940 | | || || || || ||| | ||||||||| | ||| || |||||| |||| Sbjct 9027 TTATCTCATAAGGACCACCGTTGGACCACCATTCATCAACGGAT--GCCGCTTCC-AGAT 8971 Query 5941 GGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTT 6000 || || ||||| || || || || || | || | || ||| ||||| || || || Sbjct 8970 TGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATT 8911 Query 6001 GTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGG 6060 ||||||||| ||||||||||| | || || ||||| || || || || || ||||| || Sbjct 8910 GTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATCCCATCAATATCTACTGGAGG 8851 Query 6061 TGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAA 6120 ||||| | ||| || | |||||| ||| |||||||||||| | | || ||||| || Sbjct 8850 AGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTTAATAAGGTAGGGATCATCAA 8791 Query 6121 GACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 |||||||||| || | || || |||| | ||| |||| | | ||| |||||| Sbjct 8790 AACACCAAACCGTCCAATGTAAAGATGGTTTTCAGTGTTAGTTATCTAGTTACAGAA 8734 >seq574 Length=41708 Score = 145 bits (160), Expect = 2e-30 Identities = 169/225 (75%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| || Sbjct 2489 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2430 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG-CTAGA--GTCAACGACT 5311 |||||||| | || ||| ||||| || | ||| || | || || ||||| || Sbjct 2429 GCACGGTTAATGATATCAGCCCA---GGTATTAATTACACGGCCTTGACTATCAACTACA 2373 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || ||||| || || || || || || |||||||||||| ||| || | || || Sbjct 2372 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTG 2313 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAA 5416 | ||| || | || || ||||||| ||| ||||||||||||||| Sbjct 2312 AACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 2268 >seq24083 Length=1989 Score = 143 bits (158), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 964 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 905 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG-CTAGA--GTCAAC 5307 || |||||||| | || ||| ||||| || | ||| || | || || ||||| Sbjct 904 ATTAGCACGGTTAATGATATCAGCCCA---GGTATTAATTACACGGCCTTGACTATCAAC 848 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || | || ||||| || || || || || || |||||||||||| ||| || | || Sbjct 847 TACATATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 788 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAA 5416 || | ||| || | || || ||||||| ||| ||||||||||||||| Sbjct 787 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 739 >seq20 Length=236725 Score = 143 bits (158), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| Sbjct 78635 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 78576 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG-CTAGA--GTCAAC 5307 || |||||||| | || ||| ||||| || | ||| || | || || ||||| Sbjct 78575 ATTAGCACGGTTAATGATATCAGCCCA---GGTATTAATTACACGGCCTTGACTATCAAC 78519 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || | || ||||| || || || || || || |||||||||||| ||| || | || Sbjct 78518 TACAAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 78459 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAA 5416 || | ||| || | || || ||||||| ||| ||||||||||||||| Sbjct 78458 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 78410 >seq10199 Length=21994 Score = 131 bits (144), Expect = 5e-26 Identities = 202/285 (71%), Gaps = 24/285 (8%) Strand=Plus/Minus Query 5237 ACTTCCATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG 5296 ||||| |||||||| || |||||||| | || ||| ||||| ||| || || || | Sbjct 14489 ACTTCGATACCAAGATTAGCACGGTTAATGATATCAGCCCAGGTGTTAA---TTACACGG 14433 Query 5297 C-TAGAGTCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGA 5355 | | || | | | ||| || |||||| || || || || |||||||||||| Sbjct 14432 CCTTGACT-ATCAACT-ACAGATTGA--------CCATTTAGGTTGAAAGCCATAGTGCT 14383 Query 5356 GATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAA 5415 ||| || | || || | ||| || | || || ||||||| || |||||||||||||| Sbjct 14382 GATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGTTAGGAAGAAATGTAA 14323 Query 5416 ACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGC 5475 | | | ||||| || |||||||| |||||||| ||| ||||||||||| Sbjct 14322 AGAAAGAGAGTTGTTGAAACTAGCATATTGGAAGAT--------CAA--TAGCCATGAGC 14273 Query 5476 CGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCC 5520 || || || ||||| |||||||||||||| |||||| | || || Sbjct 14272 AGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAGCC 14228 >seq6008 Length=80333 Score = 114 bits (126), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250 ||| ||||| || || |||||||| |||||||| ||||| |||| |||| ||||||||| Sbjct 50463 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAG 50522 Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGC-TAGAGT--CAAC 5307 || |||||||| | || ||| ||||| || || || || || | || | |||| Sbjct 50523 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAA---TTACACGGCCTTGACTACCAAC 50579 Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367 || | || ||||| || || || || || || |||||||||||| ||| || | || Sbjct 50580 TACAAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 50639 Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGA 5405 || | ||| || | || || ||||||| ||| |||| Sbjct 50640 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGA 50677 >seq4124 Length=71480 Score = 82.4 bits (90), Expect = 2e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 5708 GGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGC 5766 |||||||||||| |||||||| || || | ||||| | || || || | | || || Sbjct 19121 GGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAATA-GC 19179 Query 5767 TGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACT 5826 || ||||| || ||||||||||| || |||||| ||||||| || || | | |||| Sbjct 19180 AGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAAGTCGCATACCCAAACGGAAACT 19239 Query 5827 AAGTTCCCA 5835 ||||||||| Sbjct 19240 AAGTTCCCA 19248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152601162469206