Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq16707 569 6e-158
seq647 275 2e-69
seq6733 149 2e-31
seq574 145 2e-30
seq24083 143 8e-30
seq20 143 8e-30
seq10199 131 5e-26
seq6008 114 4e-21
seq4124 82.4 2e-11
>seq16707
Length=103149
Score = 569 bits (630), Expect = 6e-158
Identities = 723/991 (73%), Gaps = 8/991 (1%)
Strand=Plus/Plus
Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250
||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 22082 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 22141
Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACC---GCTAGAGTCAAC 5307
|| |||||||| | || ||| |||||||| || | | ||| |||| |||||
Sbjct 22142 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTA---TCAAC 22198
Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367
|| || || ||||| || || ||||| ||||| ||||||||||| || || | ||
Sbjct 22199 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 22258
Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATT 5427
|| | ||| || | || || ||||||| ||||| |||||| |||||| ||| ||
Sbjct 22259 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 22318
Query 5428 GTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTT 5487
|||||| |||||||| |||||||| | || ||||| || |||||||| || ||||| ||
Sbjct 22319 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 22378
Query 5488 ATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGT 5547
||| |||||||||||||| || ||| | || || | || ||| |||| ||
Sbjct 22379 ATAAGTTTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 22438
Query 5548 TTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACC 5607
||| | || | ||| || || | |||||||||||| ||| | | || ||
Sbjct 22439 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 22498
Query 5608 GAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTG 5667
|||||| ||||| ||||| | |||||| || |||||||||||||| || || ||||||||
Sbjct 22499 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 22558
Query 5668 GAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACT 5727
|||||| | ||||||||| ||||||||||| || || | ||||||||||||| ||||||
Sbjct 22559 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 22618
Query 5728 TCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAAT 5786
||| || || | |||||| | || || || | |||| || || ||||| || |||||||
Sbjct 22619 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTA-GCAGCTGCAACAGGAGCTGAAT 22677
Query 5787 ATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCA 5846
|||| || |||||| || ||||| || | | | |||| |||||||| | || ||||
Sbjct 22678 ATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCA 22737
Query 5847 AGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGT 5906
||| || | ||||| | |||||| | || | || | || || || |||||||
Sbjct 22738 TATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGT 22797
Query 5907 AAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGT 5966
| | ||||||||| | | || ||||||||||| || || ||||| || || || ||
Sbjct 22798 ATAACCATTCATCAACAGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTG 22857
Query 5967 TGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGA 6026
|| | || | || ||| || || || || |||||||| || |||| ||| || | |
Sbjct 22858 CAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAA 22917
Query 6027 CGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATG 6086
| || ||||| || || || || || ||||| || ||||| | ||| || | ||||||
Sbjct 22918 CAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATA 22977
Query 6087 CAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGC 6146
||| |||||||||||| | | || ||||| || ||||| ||||| || | || || |
Sbjct 22978 CAGAAGTTGCGGTTAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGAC 23037
Query 6147 GGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
|||| | ||||||||| | ||||| |||||
Sbjct 23038 GGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 23068
>seq647
Length=36880
Score = 275 bits (304), Expect = 2e-69
Identities = 389/541 (72%), Gaps = 7/541 (1%)
Strand=Plus/Plus
Query 5563 AGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCC-CAGCAA 5621
|||||| || | | |||||||||||| ||| | || |||||||||| |||| |
Sbjct 13641 AGAAGTTACCAAAGAACCATGCATAGCACTGAATGGGGAGCCGCCGAATACCCACAGCTA 13700
Query 5622 CACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAA 5681
||| | |||||| || | ||||||||||| ||||| || || |||| ||||| ||| |
Sbjct 13701 TACCTAACATGTGAAATGTGTGCATAAGGATGTTGTGCTCAGCATGGAGTACGATCATGA 13760
Query 5682 AGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAG 5741
|||| |||||||||||||| || | ||||||||||| | |||||||| | || | |
Sbjct 13761 AGTTGAAAGTACCAGAGATTCCTACAGGCATACCATTAGAAAAACTTCCTTAACCAATTG 13820
Query 5742 GGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATC 5800
|||| | || || || | |||| || || ||||| | ||||||||||| || ||||
Sbjct 13821 GGTAGATCAAGAAAACAGCAGTA-GCAGCTGCAACAAGAGCTGAATATGCAACAACAATC 13879
Query 5801 CATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATA 5860
| ||| |||| || || | | | ||||||||||| | || |||| |||| | | |
Sbjct 13880 AAAGGTTGCATACCCAAACGGAAGCTAAGTTCCCACTCACGACCCATGTAACACACTACA 13939
Query 5861 CCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCG 5920
|||| | |||||| | || | || | || || || |||||||| | |||||||||
Sbjct 13940 CCAAGCAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCA 13999
Query 5921 A--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTA 5978
| ||| || ||||||||||| || || ||||| || || || || | || | ||
Sbjct 14000 ATGGAT--GCCGCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGTAGAAGTAGGAT 14057
Query 5979 CAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTA 6038
|| | | ||||| || || |||||||| || ||||||||||| | || || ||||| |
Sbjct 14058 TAATGACACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAA 14117
Query 6039 TGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGG 6098
| || || || ||||| || ||||| | ||| || || |||||| ||| |||||| |
Sbjct 14118 TACCATCAGCATCTACTGGAGGAGCAGCAATGAAGGCGAAAATAAATACAGAAGTTGCAG 14177
Query 6099 T 6099
|
Sbjct 14178 T 14178
>seq6733
Length=89479
Score = 149 bits (164), Expect = 2e-31
Identities = 249/357 (70%), Gaps = 5/357 (1%)
Strand=Plus/Minus
Query 5823 AACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGA 5882
||||||||| || | || ||| |||| || | ||||| | |||||| | || |
Sbjct 9087 AACTAAGTTTTCACTCACGATCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 9028
Query 5883 CGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGAT 5940
| | || || || || ||| | ||||||||| | ||| || |||||| ||||
Sbjct 9027 TTATCTCATAAGGACCACCGTTGGACCACCATTCATCAACGGAT--GCCGCTTCC-AGAT 8971
Query 5941 GGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTT 6000
|| || ||||| || || || || || | || | || ||| ||||| || || ||
Sbjct 8970 TGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATT 8911
Query 6001 GTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGG 6060
||||||||| ||||||||||| | || || ||||| || || || || || ||||| ||
Sbjct 8910 GTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATCCCATCAATATCTACTGGAGG 8851
Query 6061 TGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAA 6120
||||| | ||| || | |||||| ||| |||||||||||| | | || ||||| ||
Sbjct 8850 AGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTTAATAAGGTAGGGATCATCAA 8791
Query 6121 GACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
|||||||||| || | || || |||| | ||| |||| | | ||| ||||||
Sbjct 8790 AACACCAAACCGTCCAATGTAAAGATGGTTTTCAGTGTTAGTTATCTAGTTACAGAA 8734
>seq574
Length=41708
Score = 145 bits (160), Expect = 2e-30
Identities = 169/225 (75%), Gaps = 6/225 (3%)
Strand=Plus/Minus
Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254
||||| || || |||||||| |||||||| ||||| ||||| |||||||||||||| ||
Sbjct 2489 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2430
Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG-CTAGA--GTCAACGACT 5311
|||||||| | || ||| ||||| || | ||| || | || || ||||| ||
Sbjct 2429 GCACGGTTAATGATATCAGCCCA---GGTATTAATTACACGGCCTTGACTATCAACTACA 2373
Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371
|| || ||||| || || || || || || |||||||||||| ||| || | || ||
Sbjct 2372 GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTG 2313
Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAA 5416
| ||| || | || || ||||||| ||| |||||||||||||||
Sbjct 2312 AACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 2268
>seq24083
Length=1989
Score = 143 bits (158), Expect = 8e-30
Identities = 171/229 (75%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250
||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 964 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 905
Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG-CTAGA--GTCAAC 5307
|| |||||||| | || ||| ||||| || | ||| || | || || |||||
Sbjct 904 ATTAGCACGGTTAATGATATCAGCCCA---GGTATTAATTACACGGCCTTGACTATCAAC 848
Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367
|| | || ||||| || || || || || || |||||||||||| ||| || | ||
Sbjct 847 TACATATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 788
Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAA 5416
|| | ||| || | || || ||||||| ||| |||||||||||||||
Sbjct 787 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 739
>seq20
Length=236725
Score = 143 bits (158), Expect = 8e-30
Identities = 171/229 (75%), Gaps = 6/229 (3%)
Strand=Plus/Minus
Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250
||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct 78635 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 78576
Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG-CTAGA--GTCAAC 5307
|| |||||||| | || ||| ||||| || | ||| || | || || |||||
Sbjct 78575 ATTAGCACGGTTAATGATATCAGCCCA---GGTATTAATTACACGGCCTTGACTATCAAC 78519
Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367
|| | || ||||| || || || || || || |||||||||||| ||| || | ||
Sbjct 78518 TACAAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 78459
Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAA 5416
|| | ||| || | || || ||||||| ||| |||||||||||||||
Sbjct 78458 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 78410
>seq10199
Length=21994
Score = 131 bits (144), Expect = 5e-26
Identities = 202/285 (71%), Gaps = 24/285 (8%)
Strand=Plus/Minus
Query 5237 ACTTCCATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG 5296
||||| |||||||| || |||||||| | || ||| ||||| ||| || || || |
Sbjct 14489 ACTTCGATACCAAGATTAGCACGGTTAATGATATCAGCCCAGGTGTTAA---TTACACGG 14433
Query 5297 C-TAGAGTCAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGA 5355
| | || | | | ||| || |||||| || || || || ||||||||||||
Sbjct 14432 CCTTGACT-ATCAACT-ACAGATTGA--------CCATTTAGGTTGAAAGCCATAGTGCT 14383
Query 5356 GATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAA 5415
||| || | || || | ||| || | || || ||||||| || ||||||||||||||
Sbjct 14382 GATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGTTAGGAAGAAATGTAA 14323
Query 5416 ACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGC 5475
| | | ||||| || |||||||| |||||||| ||| |||||||||||
Sbjct 14322 AGAAAGAGAGTTGTTGAAACTAGCATATTGGAAGAT--------CAA--TAGCCATGAGC 14273
Query 5476 CGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCC 5520
|| || || ||||| |||||||||||||| |||||| | || ||
Sbjct 14272 AGCTACGATATTATAAGTTTCTTCCTCTTGACCGAATCTGTAGCC 14228
>seq6008
Length=80333
Score = 114 bits (126), Expect = 4e-21
Identities = 158/218 (72%), Gaps = 6/218 (3%)
Strand=Plus/Plus
Query 5191 AGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAG 5250
||| ||||| || || |||||||| |||||||| ||||| |||| |||| |||||||||
Sbjct 50463 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAG 50522
Query 5251 GTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGC-TAGAGT--CAAC 5307
|| |||||||| | || ||| ||||| || || || || || | || | ||||
Sbjct 50523 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAA---TTACACGGCCTTGACTACCAAC 50579
Query 5308 GACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGA 5367
|| | || ||||| || || || || || || |||||||||||| ||| || | ||
Sbjct 50580 TACAAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 50639
Query 5368 GGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGA 5405
|| | ||| || | || || ||||||| ||| ||||
Sbjct 50640 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGA 50677
>seq4124
Length=71480
Score = 82.4 bits (90), Expect = 2e-11
Identities = 97/129 (75%), Gaps = 2/129 (2%)
Strand=Plus/Plus
Query 5708 GGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGC 5766
|||||||||||| |||||||| || || | ||||| | || || || | | || ||
Sbjct 19121 GGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAATA-GC 19179
Query 5767 TGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACT 5826
|| ||||| || ||||||||||| || |||||| ||||||| || || | | ||||
Sbjct 19180 AGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAAGTCGCATACCCAAACGGAAACT 19239
Query 5827 AAGTTCCCA 5835
|||||||||
Sbjct 19240 AAGTTCCCA 19248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152601162469206
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