Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq16707 531 2e-146 seq647 251 2e-62 seq6733 158 4e-34 seq574 134 4e-27 seq24083 131 5e-26 seq20 131 5e-26 seq4124 105 2e-18 seq10199 96.9 1e-15 seq6008 96.9 1e-15 >seq16707 Length=103149 Score = 531 bits (588), Expect = 2e-146 Identities = 708/979 (72%), Gaps = 6/979 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | | Sbjct 22086 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 22145 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||| | || ||||||||||| | || | || | | |||||| || || Sbjct 22146 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 22205 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || ||||| ||||| ||||||||||| | || | ||| || | | Sbjct 22206 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 22265 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||||| |||||| |||||| ||| || ||||| Sbjct 22266 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 22325 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 |||||||| |||||||| | || ||||| || |||||||| || ||||| ||||| || Sbjct 22326 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTT 22385 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||| | || || | || |||||| |||| ||||| | Sbjct 22386 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 22445 Query 25813 AT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | |||| || |||| || ||||||||| ||||| | || |||||| Sbjct 22446 ATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCCGAAT 22502 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || ||||| | ||| || || |||||||||||||| || || |||||||| || Sbjct 22503 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAAT 22562 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| |||||| |||||||| || || || || | ||||||||||||||||||||| ||| Sbjct 22563 ACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCT 22622 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || |||| |||||| | ||||| |||||| || ||||||||||| |||||||| || Sbjct 22623 TGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 22682 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAA 26109 ||| ||||| || | ||| || || | |||| |||||||| | || |||| ||| Sbjct 22683 ACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAA 22742 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 | | || | | ||||| | ||||| || | ||| || || || || || ||| Sbjct 22743 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAAC 22802 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 || || || | | ||| ||||||||||||||||| ||||| | ||| || || ||| Sbjct 22803 CATTCATCAACAGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAA 22862 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 | || | || || || ||||| || |||||||| || ||||| | || || |||||| Sbjct 22863 GTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGC 22922 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349 |||||||||||||| ||||| || ||||| ||||| | || || || | |||| | | Sbjct 22923 TCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAA 22982 Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409 ||| ||||| | | ||||||||| | || || ||||| || | || || ||||| Sbjct 22983 GTTGCGGTTAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTT 23042 Query 26410 TTTGTACTTGTAACCCAGT 26428 | || || || | ||||| Sbjct 23043 TCGGTGCTAGTTATCCAGT 23061 >seq647 Length=36880 Score = 251 bits (278), Expect = 2e-62 Identities = 351/491 (71%), Gaps = 1/491 (0%) Strand=Plus/Plus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCC-CTGCAACACCGAGCATATGGAA 25895 || ||||||||| |||| | || |||||||||| | || | ||| | ||| || || Sbjct 13657 CCATGCATAGCACTGAATGGGGAGCCGCCGAATACCCACAGCTATACCTAACATGTGAAA 13716 Query 25896 CGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGA 25955 | ||||||||||| ||||| || || || | || | ||| || |||||||| || || Sbjct 13717 TGTGTGCATAAGGATGTTGTGCTCAGCATGGAGTACGATCATGAAGTTGAAAGTACCAGA 13776 Query 25956 AATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATAC 26015 || || | ||||||||||| ||| ||||| |||| |||| ||||||| ||||| || Sbjct 13777 GATTCCTACAGGCATACCATTAGAAAAACTTCCTTAACCAATTGGGTAGATCAAGAAAAC 13836 Query 26016 AGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAG 26075 |||| || ||||||||| | |||||||| || ||| ||| | || ||| || | Sbjct 13837 AGCAGTAGCAGCTGCAACAAGAGCTGAATATGCAACAACAATCAAAGGTTGCATACCCAA 13896 Query 26076 TCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAA 26135 | | ||||||||||| | || |||| |||| | || | | ||||| | Sbjct 13897 ACGGAAGCTAAGTTCCCACTCACGACCCATGTAACACACTACACCAAGCAAGAAGTGTAG 13956 Query 26136 CACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCA 26195 ||||| || | ||| || || || || || ||||| || || | || ||| |||||||| Sbjct 13957 AACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAATGGATGCCGCTTCCCA 14016 Query 26196 GATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGAT 26255 ||| ||||| ||||| | ||| || || |||| | || || | |||||||| || Sbjct 14017 GATCGGGTAAAAGTGCAAACCTATAGCTGTAGAAGTAGGATTAATGACACCTGAGATAAT 14076 Query 26256 GTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGG 26315 |||||||| || |||| | ||| || |||||||||||||||||||| ||| || || Sbjct 14077 ATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAGCATCTACTGG 14136 Query 26316 AGGCGCAGCAA 26326 ||| ||||||| Sbjct 14137 AGGAGCAGCAA 14147 >seq6733 Length=89479 Score = 158 bits (174), Expect = 4e-34 Identities = 193/262 (74%), Gaps = 1/262 (0%) Strand=Plus/Minus Query 26128 AAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCA 26187 ||||| | ||||| | | ||| || |||||||| || |||| || || | || ||| Sbjct 9040 AAGTGTAGAACAATTATCTCATAAGGACCACCGTTGGACCACCATTCATCAACGGATGCC 8981 Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247 |||||| |||||||||| ||||| | ||| || || ||| | || | || || ||| Sbjct 8980 GCTTCC-AGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCT 8922 Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 26307 ||||| || ||||||||||| |||| | ||| || |||||||||||||| ||||| ||| Sbjct 8921 GAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATCCCATCAATA 8862 Query 26308 TCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCA 26367 || || ||||| ||||||| || || || | |||| | | ||| ||||| | | | Sbjct 8861 TCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTTAATAAGGTA 8802 Query 26368 GGGATCATTAGTACCCCAAACC 26389 |||||||| | || ||||||| Sbjct 8801 GGGATCATCAAAACACCAAACC 8780 >seq574 Length=41708 Score = 134 bits (148), Expect = 4e-27 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | | Sbjct 2489 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2430 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || |||||||| || | || | || | |||||| || || Sbjct 2429 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGAT 2370 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || |||||||||||| || || | ||| || | | Sbjct 2369 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 2310 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 25674 || || | || ||||||||||| ||||||||||||||| Sbjct 2309 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 2268 >seq24083 Length=1989 Score = 131 bits (144), Expect = 5e-26 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | | Sbjct 960 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 901 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || |||||||| || | || | || | |||||| || | Sbjct 900 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACATAT 841 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || |||||||||||| || || | ||| || | | Sbjct 840 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 781 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 25674 || || | || ||||||||||| ||||||||||||||| Sbjct 780 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 739 >seq20 Length=236725 Score = 131 bits (144), Expect = 5e-26 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||||||||||||| || | | Sbjct 78631 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 78572 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || |||||||| || | || | || | |||||| || | Sbjct 78571 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAAAT 78512 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || |||||||||||| || || | ||| || | | Sbjct 78511 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 78452 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAA 25674 || || | || ||||||||||| ||||||||||||||| Sbjct 78451 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAA 78410 >seq4124 Length=71480 Score = 105 bits (116), Expect = 2e-18 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 25966 GGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCT 26025 |||||||||||||| ||||| ||||| |||| ||||||| ||||| ||||||| || Sbjct 19121 GGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAATAGCA 19180 Query 26026 GCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTA 26085 ||||||||||| |||||||| || ||| ||||| | | ||| || | | ||||| Sbjct 19181 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAAGTCGCATACCCAAACGGAAACTA 19240 Query 26086 AGTTCCCA 26093 |||||||| Sbjct 19241 AGTTCCCA 19248 >seq10199 Length=21994 Score = 96.9 bits (106), Expect = 1e-15 Identities = 136/191 (71%), Gaps = 10/191 (5%) Strand=Plus/Minus Query 25588 CCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACG 25647 || || || || |||||||||||| || || | ||| || | ||| || | || Sbjct 14408 CCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACA 14349 Query 25648 GGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAG 25707 |||||||||| ||||||||||||||| | | || || || |||||||| |||||| Sbjct 14348 GGCCAAGCAGTTAGGAAGAAATGTAAAGAAAGAGAGTTGTTGAAACTAGCATATTGGAAG 14289 Query 25708 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCG 25767 || ||| ||||||||||| || || || ||||| || ||||| ||||| ||| Sbjct 14288 AT--------CAA--TAGCCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCG 14239 Query 25768 AATTTATATCC 25778 ||| | || || Sbjct 14238 AATCTGTAGCC 14228 >seq6008 Length=80333 Score = 96.9 bits (106), Expect = 1e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || ||||| ||||||| ||||| ||| || | | Sbjct 50467 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAGATTA 50526 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||||||||| || |||||||| || | || | || | | |||| || | Sbjct 50527 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTACCAACTACAAAT 50586 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || || || |||||||||||| || || | ||| || | | Sbjct 50587 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 50646 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGA 25663 || || | || ||||||||||| |||| Sbjct 50647 CAGATACCTACTACAGGCCAAGCAGCTAGGA 50677 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151945370625796