Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7849 107 1e-18 seq12303 96.9 3e-15 seq4434 96.9 3e-15 seq10943 93.3 3e-14 seq2938 91.5 1e-13 seq22277 84.2 2e-11 seq21627 82.4 6e-11 >seq7849 Length=122270 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 |||||||| ||||||| |||||||||||| || ||| || || || ||||| || | Sbjct 79472 CCGCCCCTCAGCCGCAGCACCAAATGTAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCC 79531 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | || | || ||||| ||||| || || || ||||| | ||||||||||| ||| Sbjct 79532 AGAGTCCGCCCATCCTCCAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGTGGA 79591 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||| || || ||||||| || || | | | | || || ||| ||| Sbjct 79592 ATCCCCTCTTTATCCTGAATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTCTCAACC 79651 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | ||| || || || || || | ||||| ||||| || ||||| Sbjct 79652 TCGAGCGTGATTGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCAT 79698 Score = 102 bits (112), Expect = 6e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || || || || |||||||| | ||| | || | || ||||||||||| |||||||| Sbjct 79736 TCCTTCTGGATGTTGTAATCGGCAAGAGTACGGCCATCCTCCAACTGCTTTCCGGCAAAG 79795 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 ||||| ||||||||||||| |||| || |||||||| ||||| ||| ||| | Sbjct 79796 ATCAGACGCTGTTGATCCGGAGGAATACCTTCCTTGTCTTGGATCTTCACTTTCACATTA 79855 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||| ||||| | || || || ||||| || | || |||||| Sbjct 79856 TCAATTGTATCAGAGCTCTCAACCTCAAGAGTGATTGTCTTTCCAGTTAGGGTCTTTACA 79915 Query 48756 AAAATCTGCAT 48766 || |||||||| Sbjct 79916 AAGATCTGCAT 79926 Score = 98.7 bits (108), Expect = 8e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || |||||||| | || | || | || || | |||| Sbjct 79268 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGCGTCCGCCCATCCTCAAGCTGC 79327 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || |||||||| ||||| | ||| || |||| |||| ||||||||||| |||||| Sbjct 79328 TTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGAATCCCCTCCTTGTCCTGAATCTTA 79387 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || ||| | | | | || || ||||||||||| ||| || || || |||||| Sbjct 79388 GCCTTCACATTATCAATCGTGTCCGAGCTCTCCACCTCCAGCGTTATTGTCTTCCCCGTC 79447 Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767 | || || ||||| ||||||||| Sbjct 79448 AGCGTCTTAACAAATATCTGCATC 79471 >seq12303 Length=64598 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||| |||| || | | |||| |||| |||||| || || || Sbjct 10633 CTCCTTCTGAATGTTGTAGTCAGCTAACGTCCTGCCGTCCTCCAGCTGCTTCCCAGCGAA 10692 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| | ||| ||||||| |||| ||||||||| || ||||| || ||| Sbjct 10693 GATCAGCCTCTGCTGATCCGGCGGAATGCCCTCCTTATCCTGGATCTTAGCCTTCACATT 10752 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || || |||||| |||| || || || || || ||||| || || || Sbjct 10753 ATCAATAGTGTCCGAGCTCTCCACTTCCAAGGTGATGGTCTTCCCAGTCAAGGTCTTGAC 10812 Query 48755 AAAAATCTGCATC 48767 ||||||||||||| Sbjct 10813 AAAAATCTGCATC 10825 >seq4434 Length=125464 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||| |||| || | | | |||| |||| |||||| || || || Sbjct 10059 CTCCTTCTGAATGTTGTAGTCAGCTAAAGTCCTTCCGTCCTCCAGCTGCTTCCCAGCGAA 10118 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || | ||| ||||||| |||| ||||||||| || ||||| || ||| Sbjct 10119 GATTAGCCTCTGCTGATCCGGCGGAATGCCCTCCTTATCATGGATCTTAGCCTTCACATT 10178 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || |||||| |||| || || || || || |||||||| || || Sbjct 10179 ATCAATGGTGTCCGAGCTCTCCACTTCCAAGGTGATGGTCTTCCCGGTCAAAGTCTTGAC 10238 Query 48755 AAAAATCTGCATC 48767 ||||||||||||| Sbjct 10239 AAAAATCTGCATC 10251 >seq10943 Length=105762 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || || ||| || ||||| || || |||| | | | | Sbjct 54353 AGACGAAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCAGCCAAAGTCCTG 54294 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 |||| |||| |||||| || ||||| |||| | ||| ||||||| |||| |||||| Sbjct 54293 CCGTCCTCCAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGATCCGGTGGAATCCCCTCC 54234 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || || ||||||||||| || Sbjct 54233 TTGTCCTGGATCTTAGCCTTAACATTGTCAATAGTATCGGAACTCTCCACCTCCAATGTG 54174 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || ||||| || || ||||||||||||||| Sbjct 54173 ATGGTCTTCCCAGTCAAGGTCTTGACAAAAATCTGCATC 54135 >seq2938 Length=28785 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||| | ||| || || ||| || ||||| || || |||| | | | Sbjct 11174 AGACGAAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCAGCCAAGGTCCTT 11115 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || ||||| ||||| | ||| ||||||| |||| |||||| Sbjct 11114 CCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCC 11055 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | || || || ||||||||||| || Sbjct 11054 TTGTCCTGGATCTTAGCCTTAACATTGTCAATAGTATCGGAACTCTCCACCTCCAATGTG 10995 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || ||||| ||||| |||||||||||||| Sbjct 10994 ATGGTCTTCCCAGTCAAGGTTTTGACAAAAATCTGCAT 10957 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | |||||| || || || ||| || ||||| || ||||||| || | || Sbjct 10946 AGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTATAATCAGCCAGGGTGCGT 10887 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || ||||| |||| || ||| || |||| || | |||||| Sbjct 10886 CCATCCTCCAACTGCTTCCCAGCAAAAATCAATCTCTGCTGGTCCGGTGGGATTCCCTCC 10827 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || ||| ||||||| ||| Sbjct 10826 TTGTCTTGGATCTTCGCCTTAACATTGTCAATGGTGTCCGAGCTCTCAACCTCCAGGGTA 10767 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | || || ||||||||||||||| Sbjct 10766 ATTGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCATC 10728 >seq22277 Length=3790 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || || || || |||||||| | || | || | || ||| Sbjct 1968 ACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCC 1909 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCT 48676 | ||| || |||||||| ||||| | ||| ||||||| ||||| | ||||||||||| Sbjct 1908 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCCGGTGGGATC-CCCTCCTTGTCCTG 1850 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||| ||| || ||| | | | || || || ||||| | ||||||||||| Sbjct 1849 AATTTTTGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACCTCGAGGGTAATCGTTTT 1790 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||||| ||||| |||||||| Sbjct 1789 CCCGGTGAGGGTTTTGACAAAGATCTGCAT 1760 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||| || || | || |||| | || || | |||||| |||||||| Sbjct 2179 CTCCTTCTGGATATTATAGTCCGCCAGGGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAA 2120 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| || |||| ||||| ||||||||||| |||||| || ||| Sbjct 2119 GATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 2060 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| ||||| | ||||| ||||| || || | ||| || || Sbjct 2059 ATCAATCGTGTCGGAACTCTCAACCTCAAGGGTAATGGTTTTCCCGGTGAGAGTCTTCAC 2000 Query 48755 AAAAATCTGCATC 48767 ||||| |||||| Sbjct 1999 GAAAATTTGCATC 1987 >seq21627 Length=4779 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || ||||| || || | || |||| | || || | |||||| |||||||| Sbjct 2603 CTCCTTCTGGATATTATAGTCCGCCAGGGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAA 2662 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| | ||| || |||| ||||| ||||||||||| |||||| || ||| Sbjct 2663 GATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 2722 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| ||||| | ||||| ||||| || || | ||| || || Sbjct 2723 ATCAATCGTGTCGGAACTCTCAACCTCAAGGGTAATGGTTTTCCCGGTGAGAGTCTTCAC 2782 Query 48755 AAAAATCTGCATC 48767 ||||| |||||| Sbjct 2783 GAAAATTTGCATC 2795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380813543027883