Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq7849 107 1e-18
seq12303 96.9 3e-15
seq4434 96.9 3e-15
seq10943 93.3 3e-14
seq2938 91.5 1e-13
seq22277 84.2 2e-11
seq21627 82.4 6e-11
>seq7849
Length=122270
Score = 107 bits (118), Expect = 1e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599
|||||||| ||||||| |||||||||||| || ||| || || || ||||| || |
Sbjct 79472 CCGCCCCTCAGCCGCAGCACCAAATGTAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCC 79531
Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659
||| | || | || ||||| ||||| || || || ||||| | ||||||||||| |||
Sbjct 79532 AGAGTCCGCCCATCCTCCAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGTGGA 79591
Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719
| ||||| || || ||||||| || || | | | | || || ||| |||
Sbjct 79592 ATCCCCTCTTTATCCTGAATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTCTCAACC 79651
Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| | ||| || || || || || | ||||| ||||| || |||||
Sbjct 79652 TCGAGCGTGATTGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCAT 79698
Score = 102 bits (112), Expect = 6e-17
Identities = 137/191 (72%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635
|| || || || |||||||| | ||| | || | || ||||||||||| ||||||||
Sbjct 79736 TCCTTCTGGATGTTGTAATCGGCAAGAGTACGGCCATCCTCCAACTGCTTTCCGGCAAAG 79795
Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695
||||| ||||||||||||| |||| || |||||||| ||||| ||| ||| |
Sbjct 79796 ATCAGACGCTGTTGATCCGGAGGAATACCTTCCTTGTCTTGGATCTTCACTTTCACATTA 79855
Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755
| | | || || ||| ||||| | || || || ||||| || | || ||||||
Sbjct 79856 TCAATTGTATCAGAGCTCTCAACCTCAAGAGTGATTGTCTTTCCAGTTAGGGTCTTTACA 79915
Query 48756 AAAATCTGCAT 48766
|| ||||||||
Sbjct 79916 AAGATCTGCAT 79926
Score = 98.7 bits (108), Expect = 8e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| || ||| ||| || || || |||||||| | || | || | || || | ||||
Sbjct 79268 TGGAGGGTGGACTCCTTCTGGATGTTGTAATCCGCAAGCGTCCGCCCATCCTCAAGCTGC 79327
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| |||||||| ||||| | ||| || |||| |||| ||||||||||| ||||||
Sbjct 79328 TTCCCGGCAAAGATCAGCCTCTGCTGGTCCGGAGGAATCCCCTCCTTGTCCTGAATCTTA 79387
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| ||| | | | | || || ||||||||||| ||| || || || ||||||
Sbjct 79388 GCCTTCACATTATCAATCGTGTCCGAGCTCTCCACCTCCAGCGTTATTGTCTTCCCCGTC 79447
Query 48744 AAAGTTTTTACAAAAATCTGCATC 48767
| || || ||||| |||||||||
Sbjct 79448 AGCGTCTTAACAAATATCTGCATC 79471
>seq12303
Length=64598
Score = 96.9 bits (106), Expect = 3e-15
Identities = 137/193 (71%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || ||||| ||||| |||| || | | |||| |||| |||||| || || ||
Sbjct 10633 CTCCTTCTGAATGTTGTAGTCAGCTAACGTCCTGCCGTCCTCCAGCTGCTTCCCAGCGAA 10692
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
||||| | ||| ||||||| |||| ||||||||| || ||||| || |||
Sbjct 10693 GATCAGCCTCTGCTGATCCGGCGGAATGCCCTCCTTATCCTGGATCTTAGCCTTCACATT 10752
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || || |||||| |||| || || || || || ||||| || || ||
Sbjct 10753 ATCAATAGTGTCCGAGCTCTCCACTTCCAAGGTGATGGTCTTCCCAGTCAAGGTCTTGAC 10812
Query 48755 AAAAATCTGCATC 48767
|||||||||||||
Sbjct 10813 AAAAATCTGCATC 10825
>seq4434
Length=125464
Score = 96.9 bits (106), Expect = 3e-15
Identities = 137/193 (71%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || ||||| ||||| |||| || | | | |||| |||| |||||| || || ||
Sbjct 10059 CTCCTTCTGAATGTTGTAGTCAGCTAAAGTCCTTCCGTCCTCCAGCTGCTTCCCAGCGAA 10118
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || | ||| ||||||| |||| ||||||||| || ||||| || |||
Sbjct 10119 GATTAGCCTCTGCTGATCCGGCGGAATGCCCTCCTTATCATGGATCTTAGCCTTCACATT 10178
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | | || || |||||| |||| || || || || || |||||||| || ||
Sbjct 10179 ATCAATGGTGTCCGAGCTCTCCACTTCCAAGGTGATGGTCTTCCCGGTCAAAGTCTTGAC 10238
Query 48755 AAAAATCTGCATC 48767
|||||||||||||
Sbjct 10239 AAAAATCTGCATC 10251
>seq10943
Length=105762
Score = 93.3 bits (102), Expect = 3e-14
Identities = 152/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||| | ||| || || ||| || ||||| || || |||| | | | |
Sbjct 54353 AGACGAAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCAGCCAAAGTCCTG 54294
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| |||| |||||| || ||||| |||| | ||| ||||||| |||| ||||||
Sbjct 54293 CCGTCCTCCAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGATCCGGTGGAATCCCCTCC 54234
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | || || || ||||||||||| ||
Sbjct 54233 TTGTCCTGGATCTTAGCCTTAACATTGTCAATAGTATCGGAACTCTCCACCTCCAATGTG 54174
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| || || || ||||| || || |||||||||||||||
Sbjct 54173 ATGGTCTTCCCAGTCAAGGTCTTGACAAAAATCTGCATC 54135
>seq2938
Length=28785
Score = 91.5 bits (100), Expect = 1e-13
Identities = 151/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||| | ||| || || ||| || ||||| || || |||| | | |
Sbjct 11174 AGACGAAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCAGCCAAGGTCCTT 11115
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| |||||| || ||||| ||||| | ||| ||||||| |||| ||||||
Sbjct 11114 CCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGGAATCCCCTCC 11055
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | || || || ||||||||||| ||
Sbjct 11054 TTGTCCTGGATCTTAGCCTTAACATTGTCAATAGTATCGGAACTCTCCACCTCCAATGTG 10995
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || ||||| ||||| ||||||||||||||
Sbjct 10994 ATGGTCTTCCCAGTCAAGGTTTTGACAAAAATCTGCAT 10957
Score = 89.7 bits (98), Expect = 4e-13
Identities = 151/219 (69%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | |||||| || || || ||| || ||||| || ||||||| || | ||
Sbjct 10946 AGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTATAATCAGCCAGGGTGCGT 10887
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || ||||||||||| || ||||| |||| || ||| || |||| || | ||||||
Sbjct 10886 CCATCCTCCAACTGCTTCCCAGCAAAAATCAATCTCTGCTGGTCCGGTGGGATTCCCTCC 10827
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || ||| | | | || || ||| ||||||| |||
Sbjct 10826 TTGTCTTGGATCTTCGCCTTAACATTGTCAATGGTGTCCGAGCTCTCAACCTCCAGGGTA 10767
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| || || || || | || || |||||||||||||||
Sbjct 10766 ATTGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCATC 10728
>seq22277
Length=3790
Score = 84.2 bits (92), Expect = 2e-11
Identities = 146/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || || || || || |||||||| | || | || | || |||
Sbjct 1968 ACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCC 1909
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCT 48676
| ||| || |||||||| ||||| | ||| ||||||| ||||| | |||||||||||
Sbjct 1908 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCCGGTGGGATC-CCCTCCTTGTCCTG 1850
Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736
||| ||| || ||| | | | || || || ||||| | |||||||||||
Sbjct 1849 AATTTTTGCCTTGACATTGTCGATGGTATCAGAGCTTTCGACCTCGAGGGTAATCGTTTT 1790
Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || | ||||| ||||| ||||||||
Sbjct 1789 CCCGGTGAGGGTTTTGACAAAGATCTGCAT 1760
Score = 82.4 bits (90), Expect = 6e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || ||||| || || | || |||| | || || | |||||| ||||||||
Sbjct 2179 CTCCTTCTGGATATTATAGTCCGCCAGGGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAA 2120
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| | ||| || |||| ||||| ||||||||||| |||||| || |||
Sbjct 2119 GATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 2060
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | | || || ||| ||||| | ||||| ||||| || || | ||| || ||
Sbjct 2059 ATCAATCGTGTCGGAACTCTCAACCTCAAGGGTAATGGTTTTCCCGGTGAGAGTCTTCAC 2000
Query 48755 AAAAATCTGCATC 48767
||||| ||||||
Sbjct 1999 GAAAATTTGCATC 1987
>seq21627
Length=4779
Score = 82.4 bits (90), Expect = 6e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || ||||| || || | || |||| | || || | |||||| ||||||||
Sbjct 2603 CTCCTTCTGGATATTATAGTCCGCCAGGGTTCGGCCATCCTCGAGCTGCTTCCCGGCAAA 2662
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| | ||| || |||| ||||| ||||||||||| |||||| || |||
Sbjct 2663 GATCAACCTCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTGAATCTTCGCCTTGACATT 2722
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | | || || ||| ||||| | ||||| ||||| || || | ||| || ||
Sbjct 2723 ATCAATCGTGTCGGAACTCTCAACCTCAAGGGTAATGGTTTTCCCGGTGAGAGTCTTCAC 2782
Query 48755 AAAAATCTGCATC 48767
||||| ||||||
Sbjct 2783 GAAAATTTGCATC 2795
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380813543027883
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