Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq16707 589 2e-163
seq647 266 4e-66
seq24083 181 1e-40
seq20 181 1e-40
seq574 165 9e-36
seq6008 147 2e-30
seq6733 141 1e-28
seq10199 118 1e-21
seq7956 87.8 2e-12
seq4124 84.2 2e-11
>seq16707
Length=103149
Score = 589 bits (652), Expect = 2e-163
Identities = 704/953 (74%), Gaps = 12/953 (1%)
Strand=Plus/Minus
Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598
|||| ||||||||||| |||||||||||| ||| | | ||| | || || || |
Sbjct 23028 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTAACCGCAACTTCTGTATTTATTA 22969
Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658
| || ||||| || || |||||||| ||||| |||||||| | || |||||| | ||||
Sbjct 22968 TCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 22909
Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718
| | || || || ||||| || ||||||||||| | |||||| ||| ||||| |
Sbjct 22908 CTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATAG 22849
Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778
|| | ||||| || || ||||||||||| ||| || ||||||| ||||| || ||||| |
Sbjct 22848 GTTTGCACTTTTACCCAATCTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCG 22789
Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTC 162835
| |||| | || | || | |||||| | | || | ||| | | | ||||
Sbjct 22788 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTC 22732
Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895
|| |||||||||| || ||| | ||||||||||||||||| ||||||||| || |
Sbjct 22731 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 22672
Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955
| || || | || || ||||| |||||| | || ||| | |||||||| |||||
Sbjct 22671 CTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCT 22612
Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015
|||| | |||||| | || || ||||||||||| |||| ||| | || ||||| ||||
Sbjct 22611 CTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAG 22552
Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075
|||| |||||||| ||||| || || || ||| | || || || ||||||||||| ||||
Sbjct 22551 AGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTT 22492
Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135
| || || ||||||||||| ||||| | || || ||| | | ||||| ||||| ||||
Sbjct 22491 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 22432
Query 163136 AGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTG 163195
| | || || || | ||||| | || || ||||| ||||| ||||| || ||||
Sbjct 22431 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTG 22372
Query 163196 TTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCAC 163255
| || |||||||| || ||||| || || |||||||| ||||| ||| |||||||| |
Sbjct 22371 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTC 22312
Query 163256 GTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315
|||| | ||||||||| | ||||| | ||||| || | || ||||||||||| | |
Sbjct 22311 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAG 22252
Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-- 163373
|| | |||||||| ||||| || ||||| ||||| ||||||||||| || |||||
Sbjct 22251 GTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATA 22192
Query 163374 -CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTA 163432
| |||| | || ||| ||||||||| |||||| | ||| | || |||||||
Sbjct 22191 GCCAAGGTCG---CGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTA 22135
Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485
||||||||||||| || ||||||||||| |||||||| || ||||| ||||||
Sbjct 22134 TGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 22082
>seq647
Length=36880
Score = 266 bits (294), Expect = 4e-66
Identities = 382/537 (71%), Gaps = 1/537 (0%)
Strand=Plus/Minus
Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660
|| |||||||| || |||||||| ||| |||||||| | || |||||| | || ||
Sbjct 14154 GCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGCCTGTTTCTGGATCT 14095
Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720
|| || || || ||||| || ||||| |||| | ||||| ||| | ||||| |||
Sbjct 14094 CTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTACTTCTACAGCTATAGGT 14035
Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780
| ||||| || || ||||||||||| ||| | ||||||| ||||| || ||||| ||
Sbjct 14034 TTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTGATGAATGGTTATACAATGGCGGT 13975
Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840
|||| | || | || | |||||| | | || | ||| |||||| ||
Sbjct 13974 CCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTGTTACATGGGTCGTGAG 13915
Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900
||||||||| | ||| || ||||||| |||| ||| ||||||||| || || |
Sbjct 13914 TGGGAACTTAGCTTCCGTTTGGGTATGCAACCTTTGATTGTTGTTGCATATTCAGCTCTT 13855
Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960
|| | || || ||||| |||||| |||| || | ||| |||| ||| ||| |
Sbjct 13854 GTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGTTTTTCTAAT 13795
Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020
| |||||| | || || ||||||||||| |||| |||| |||| |||| || ||||||
Sbjct 13794 GGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTACTCCATGCTGAGCAC 13735
Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAG-GTGTATTCGGTGGTTCACT 163079
|||||||| |||||| | || || ||| | || | || | | |||||||| || || |
Sbjct 13734 AACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTATTCGGCGGCTCCCC 13675
Query 163080 CTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGA 163136
|| ||||||||||| |||||| | || |||||| | | ||||| ||||| || ||
Sbjct 13674 ATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 13618
>seq24083
Length=1989
Score = 181 bits (200), Expect = 1e-40
Identities = 189/247 (77%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301
||| |||||||| ||||| | || |||||||| ||||| | ||||| || | |||||
Sbjct 721 TTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 780
Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361
||||||||| | ||| | |||||||| |||||||| || |||||||| ||||||||
Sbjct 781 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 840
Query 163362 ATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAG 163418
|| || ||||| ||| || || ||| ||| ||||| |||||| ||||| |
Sbjct 841 ATATGTAGTTGATAGTCAAGGCCGT---GTAATTAATACCTGGGCTGATATCATTAACCG 897
Query 163419 AGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478
|| |||||||||||||||||||| || ||||||||||| |||||||| || |||||
Sbjct 898 TGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 957
Query 163479 TGCTGCT 163485
||||||
Sbjct 958 AGCTGCT 964
>seq20
Length=236725
Score = 181 bits (200), Expect = 1e-40
Identities = 189/247 (77%), Gaps = 6/247 (2%)
Strand=Plus/Plus
Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301
||| |||||||| ||||| | || |||||||| ||||| | ||||| || | |||||
Sbjct 78392 TTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 78451
Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361
||||||||| | ||| | |||||||| |||||||| || |||||||| ||||||||
Sbjct 78452 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 78511
Query 163362 ATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAG 163418
|| || ||||| ||| || || ||| ||| ||||| |||||| ||||| |
Sbjct 78512 ATTTGTAGTTGATAGTCAAGGCCGT---GTAATTAATACCTGGGCTGATATCATTAACCG 78568
Query 163419 AGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478
|| |||||||||||||||||||| || ||||||||||| |||||||| || |||||
Sbjct 78569 TGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 78628
Query 163479 TGCTGCT 163485
||||||
Sbjct 78629 AGCTGCT 78635
>seq574
Length=41708
Score = 165 bits (182), Expect = 9e-36
Identities = 171/223 (77%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 163264 CACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCA 163323
|| |||||||| ||||| | ||||| || | |||||||||||||| | ||| |
Sbjct 2272 CATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGC 2331
Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGT 163380
|||||||| |||||||| || |||||||| ||||||||||| || ||||| |||
Sbjct 2332 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGC 2391
Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTT 163440
|| || ||| ||| ||||| |||||| ||||| | || |||||||||||||||
Sbjct 2392 CGT---GTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTT 2448
Query 163441 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTG 163483
||||| || ||||||||||| |||||||| || ||||| ||||
Sbjct 2449 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTG 2491
>seq6008
Length=80333
Score = 147 bits (162), Expect = 2e-30
Identities = 165/218 (76%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 163271 TCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGG 163330
|||| ||||| | ||||| || | |||||||||||||| | ||| | |||||||
Sbjct 50677 TCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGG 50618
Query 163331 CATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTG--ACGCA-GGTGGTAAAG 163387
| |||||||| || |||||||| |||||||||| || |||| | || || || |
Sbjct 50617 CTTTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGGTAGTCAAGGCCGT---G 50561
Query 163388 TGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACG 163447
| ||| ||| ||||| |||||| ||||| | || ||||||||| ||||| |||| |
Sbjct 50560 TAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGTAAGTTGTGCATG 50501
Query 163448 AGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485
| ||||||||||| |||||||| || ||||| ||||||
Sbjct 50500 AACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 50463
>seq6733
Length=89479
Score = 141 bits (156), Expect = 1e-28
Identities = 176/240 (73%), Gaps = 1/240 (0%)
Strand=Plus/Plus
Query 162545 GGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCAT 162604
|||| ||||| |||||||||||| ||| | | ||| | || || || || || |
Sbjct 8780 GGTTTGGTGTTTTGATGATCCCTACCTTATTAACCGCAACTTCTGTATTTATTATCGCCT 8839
Query 162605 TCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTC 162664
||||||| || |||||||| ||||| ||||| || | || |||||| | || || || |
Sbjct 8840 TCATTGCTGCTCCTCCAGTAGATATTGATGGGATTCGTGAGCCTGTTTCTGGATCTCTAC 8899
Query 162665 TCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTC 162724
| ||||| ||||| || ||||| ||||| | |||||| ||| ||||| ||| | |
Sbjct 8900 TTTATGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGC 8959
Query 162725 ACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTT 162784
|||| || || |||| |||||| ||| | ||||||| |||| || || ||||| ||||
Sbjct 8960 ACTTTTACCCAATCT-GGAAGCGGCATCCGTTGATGAATGGTGGTCCAACGGTGGTCCTT 9018
>seq10199
Length=21994
Score = 118 bits (130), Expect = 1e-21
Identities = 135/183 (74%), Gaps = 10/183 (5%)
Strand=Plus/Plus
Query 163165 TTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTG 163224
||||| ||||| ||||| ||||| || || || ||||||||||| || |||
Sbjct 14237 TTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGCTA----------TTG 14286
Query 163225 ATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTC 163284
|||||||| ||||| |||||||||||| | ||| | || |||||||| |||| |
Sbjct 14287 ATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTCTTCCTAACTGCTTGG 14346
Query 163285 CCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAAC 163344
||||| || | |||||||||||||| | ||| | |||||||| |||||||| ||
Sbjct 14347 CCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAAT 14406
Query 163345 GGT 163347
|||
Sbjct 14407 GGT 14409
>seq7956
Length=50133
Score = 87.8 bits (96), Expect = 2e-12
Identities = 122/171 (71%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 163246 AACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTC 163305
|||||||| | ||| | || |||||||| |||| | ||| | || | ||||| |||
Sbjct 30829 AACAACTCTCCTTCTTTACATTTCTTCCTAACTGCTTGGCCTTTAGTAGGTATCTGATTC 30770
Query 163306 ACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCC 163365
||||| | | | | |||||||| |||||||| || |||||||| |||||||||||
Sbjct 30769 ACTGCTTTAGATATCAACACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 30710
Query 163366 GTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAAC 163416
|| ||||| || | || ||| || ||||| |||||| |||||
Sbjct 30709 GTAGTTGATAGTCAAGGCAGTGTAATTAATATCTGGGCTGATATCATTAAC 30659
>seq4124
Length=71480
Score = 84.2 bits (92), Expect = 2e-11
Identities = 100/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 162833 GTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACT 162892
||| | ||||||||||| || ||| || |||||||| | |||||| ||||||||| |
Sbjct 19256 GTCATGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACTTTGGATTGCTGTTGCATATT 19197
Query 162893 CTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTT 162952
| || || || | || || | ||||| |||||| |||| || | |||||||| ||
Sbjct 19196 CAGCTCCTGTTGCAGCTGCTATTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTT 19137
Query 162953 TCTCTGACGCAATGCC 162968
| ||||| | |||||
Sbjct 19136 TTTCTGATGGTATGCC 19121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552900062763240
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