Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq16707 589 2e-163 seq647 266 4e-66 seq24083 181 1e-40 seq20 181 1e-40 seq574 165 9e-36 seq6008 147 2e-30 seq6733 141 1e-28 seq10199 118 1e-21 seq7956 87.8 2e-12 seq4124 84.2 2e-11 >seq16707 Length=103149 Score = 589 bits (652), Expect = 2e-163 Identities = 704/953 (74%), Gaps = 12/953 (1%) Strand=Plus/Minus Query 162539 TCGGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCA 162598 |||| ||||||||||| |||||||||||| ||| | | ||| | || || || | Sbjct 23028 TCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTAACCGCAACTTCTGTATTTATTA 22969 Query 162599 TTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTT 162658 | || ||||| || || |||||||| ||||| |||||||| | || |||||| | |||| Sbjct 22968 TCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTT 22909 Query 162659 CACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTG 162718 | | || || || ||||| || ||||||||||| | |||||| ||| ||||| | Sbjct 22908 CTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATAG 22849 Query 162719 GTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTG 162778 || | ||||| || || ||||||||||| ||| || ||||||| ||||| || ||||| | Sbjct 22848 GTTTGCACTTTTACCCAATCTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCG 22789 Query 162779 GACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTC 162835 | |||| | || | || | |||||| | | || | ||| | | | |||| Sbjct 22788 GTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTC 22732 Query 162836 GTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTG 162895 || |||||||||| || ||| | ||||||||||||||||| ||||||||| || | Sbjct 22731 GTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAG 22672 Query 162896 CACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCT 162955 | || || | || || ||||| |||||| | || ||| | |||||||| ||||| Sbjct 22671 CTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCT 22612 Query 162956 CTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAG 163015 |||| | |||||| | || || ||||||||||| |||| ||| | || ||||| |||| Sbjct 22611 CTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAG 22552 Query 163016 AGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTT 163075 |||| |||||||| ||||| || || || ||| | || || || ||||||||||| |||| Sbjct 22551 AGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTT 22492 Query 163076 CACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTG 163135 | || || ||||||||||| ||||| | || || ||| | | ||||| ||||| |||| Sbjct 22491 CCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTG 22432 Query 163136 AGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTG 163195 | | || || || | ||||| | || || ||||| ||||| ||||| || |||| Sbjct 22431 AAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTG 22372 Query 163196 TTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCAC 163255 | || |||||||| || ||||| || || |||||||| ||||| ||| |||||||| | Sbjct 22371 TGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTC 22312 Query 163256 GTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGG 163315 |||| | ||||||||| | ||||| | ||||| || | || ||||||||||| | | Sbjct 22311 GTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAG 22252 Query 163316 GTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA-- 163373 || | |||||||| ||||| || ||||| ||||| ||||||||||| || ||||| Sbjct 22251 GTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATA 22192 Query 163374 -CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTA 163432 | |||| | || ||| ||||||||| |||||| | ||| | || ||||||| Sbjct 22191 GCCAAGGTCG---CGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTA 22135 Query 163433 TGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||||||||||| || ||||||||||| |||||||| || ||||| |||||| Sbjct 22134 TGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 22082 >seq647 Length=36880 Score = 266 bits (294), Expect = 4e-66 Identities = 382/537 (71%), Gaps = 1/537 (0%) Strand=Plus/Minus Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||| |||||||| | || |||||| | || || Sbjct 14154 GCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGCCTGTTTCTGGATCT 14095 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || || || ||||| || ||||| |||| | ||||| ||| | ||||| ||| Sbjct 14094 CTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTACTTCTACAGCTATAGGT 14035 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | ||||| || || ||||||||||| ||| | ||||||| ||||| || ||||| || Sbjct 14034 TTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTGATGAATGGTTATACAATGGCGGT 13975 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAG 162840 |||| | || | || | |||||| | | || | ||| |||||| || Sbjct 13974 CCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTGTTACATGGGTCGTGAG 13915 Query 162841 TGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCA 162900 ||||||||| | ||| || ||||||| |||| ||| ||||||||| || || | Sbjct 13914 TGGGAACTTAGCTTCCGTTTGGGTATGCAACCTTTGATTGTTGTTGCATATTCAGCTCTT 13855 Query 162901 GTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 162960 || | || || ||||| |||||| |||| || | ||| |||| ||| ||| | Sbjct 13854 GTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGTTTTTCTAAT 13795 Query 162961 GCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCAC 163020 | |||||| | || || ||||||||||| |||| |||| |||| |||| || |||||| Sbjct 13794 GGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTACTCCATGCTGAGCAC 13735 Query 163021 AACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAG-GTGTATTCGGTGGTTCACT 163079 |||||||| |||||| | || || ||| | || | || | | |||||||| || || | Sbjct 13734 AACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTATTCGGCGGCTCCCC 13675 Query 163080 CTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGA 163136 || ||||||||||| |||||| | || |||||| | | ||||| ||||| || || Sbjct 13674 ATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 13618 >seq24083 Length=1989 Score = 181 bits (200), Expect = 1e-40 Identities = 189/247 (77%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301 ||| |||||||| ||||| | || |||||||| ||||| | ||||| || | ||||| Sbjct 721 TTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 780 Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361 ||||||||| | ||| | |||||||| |||||||| || |||||||| |||||||| Sbjct 781 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 840 Query 163362 ATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAG 163418 || || ||||| ||| || || ||| ||| ||||| |||||| ||||| | Sbjct 841 ATATGTAGTTGATAGTCAAGGCCGT---GTAATTAATACCTGGGCTGATATCATTAACCG 897 Query 163419 AGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478 || |||||||||||||||||||| || ||||||||||| |||||||| || ||||| Sbjct 898 TGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 957 Query 163479 TGCTGCT 163485 |||||| Sbjct 958 AGCTGCT 964 >seq20 Length=236725 Score = 181 bits (200), Expect = 1e-40 Identities = 189/247 (77%), Gaps = 6/247 (2%) Strand=Plus/Plus Query 163242 TTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTG 163301 ||| |||||||| ||||| | || |||||||| ||||| | ||||| || | ||||| Sbjct 78392 TTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 78451 Query 163302 GTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCA 163361 ||||||||| | ||| | |||||||| |||||||| || |||||||| |||||||| Sbjct 78452 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 78511 Query 163362 ATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAG 163418 || || ||||| ||| || || ||| ||| ||||| |||||| ||||| | Sbjct 78512 ATTTGTAGTTGATAGTCAAGGCCGT---GTAATTAATACCTGGGCTGATATCATTAACCG 78568 Query 163419 AGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCT 163478 || |||||||||||||||||||| || ||||||||||| |||||||| || ||||| Sbjct 78569 TGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 78628 Query 163479 TGCTGCT 163485 |||||| Sbjct 78629 AGCTGCT 78635 >seq574 Length=41708 Score = 165 bits (182), Expect = 9e-36 Identities = 171/223 (77%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 163264 CACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCA 163323 || |||||||| ||||| | ||||| || | |||||||||||||| | ||| | Sbjct 2272 CATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGC 2331 Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGT 163380 |||||||| |||||||| || |||||||| ||||||||||| || ||||| ||| Sbjct 2332 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGC 2391 Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTT 163440 || || ||| ||| ||||| |||||| ||||| | || ||||||||||||||| Sbjct 2392 CGT---GTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTT 2448 Query 163441 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTG 163483 ||||| || ||||||||||| |||||||| || ||||| |||| Sbjct 2449 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTG 2491 >seq6008 Length=80333 Score = 147 bits (162), Expect = 2e-30 Identities = 165/218 (76%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 163271 TCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGG 163330 |||| ||||| | ||||| || | |||||||||||||| | ||| | ||||||| Sbjct 50677 TCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGG 50618 Query 163331 CATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTG--ACGCA-GGTGGTAAAG 163387 | |||||||| || |||||||| |||||||||| || |||| | || || || | Sbjct 50617 CTTTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGGTAGTCAAGGCCGT---G 50561 Query 163388 TGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACG 163447 | ||| ||| ||||| |||||| ||||| | || ||||||||| ||||| |||| | Sbjct 50560 TAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGTAAGTTGTGCATG 50501 Query 163448 AGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 | ||||||||||| |||||||| || ||||| |||||| Sbjct 50500 AACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 50463 >seq6733 Length=89479 Score = 141 bits (156), Expect = 1e-28 Identities = 176/240 (73%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 162545 GGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCAT 162604 |||| ||||| |||||||||||| ||| | | ||| | || || || || || | Sbjct 8780 GGTTTGGTGTTTTGATGATCCCTACCTTATTAACCGCAACTTCTGTATTTATTATCGCCT 8839 Query 162605 TCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTC 162664 ||||||| || |||||||| ||||| ||||| || | || |||||| | || || || | Sbjct 8840 TCATTGCTGCTCCTCCAGTAGATATTGATGGGATTCGTGAGCCTGTTTCTGGATCTCTAC 8899 Query 162665 TCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTC 162724 | ||||| ||||| || ||||| ||||| | |||||| ||| ||||| ||| | | Sbjct 8900 TTTATGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGC 8959 Query 162725 ACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTT 162784 |||| || || |||| |||||| ||| | ||||||| |||| || || ||||| |||| Sbjct 8960 ACTTTTACCCAATCT-GGAAGCGGCATCCGTTGATGAATGGTGGTCCAACGGTGGTCCTT 9018 >seq10199 Length=21994 Score = 118 bits (130), Expect = 1e-21 Identities = 135/183 (74%), Gaps = 10/183 (5%) Strand=Plus/Plus Query 163165 TTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTG 163224 ||||| ||||| ||||| ||||| || || || ||||||||||| || ||| Sbjct 14237 TTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGCTA----------TTG 14286 Query 163225 ATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTC 163284 |||||||| ||||| |||||||||||| | ||| | || |||||||| |||| | Sbjct 14287 ATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTCTTCCTAACTGCTTGG 14346 Query 163285 CCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAAC 163344 ||||| || | |||||||||||||| | ||| | |||||||| |||||||| || Sbjct 14347 CCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAAT 14406 Query 163345 GGT 163347 ||| Sbjct 14407 GGT 14409 >seq7956 Length=50133 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 163246 AACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTC 163305 |||||||| | ||| | || |||||||| |||| | ||| | || | ||||| ||| Sbjct 30829 AACAACTCTCCTTCTTTACATTTCTTCCTAACTGCTTGGCCTTTAGTAGGTATCTGATTC 30770 Query 163306 ACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCC 163365 ||||| | | | | |||||||| |||||||| || |||||||| ||||||||||| Sbjct 30769 ACTGCTTTAGATATCAACACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCT 30710 Query 163366 GTCGTTGACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAAC 163416 || ||||| || | || ||| || ||||| |||||| ||||| Sbjct 30709 GTAGTTGATAGTCAAGGCAGTGTAATTAATATCTGGGCTGATATCATTAAC 30659 >seq4124 Length=71480 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 162833 GTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACT 162892 ||| | ||||||||||| || ||| || |||||||| | |||||| ||||||||| | Sbjct 19256 GTCATGAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACTTTGGATTGCTGTTGCATATT 19197 Query 162893 CTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTT 162952 | || || || | || || | ||||| |||||| |||| || | |||||||| || Sbjct 19196 CAGCTCCTGTTGCAGCTGCTATTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTT 19137 Query 162953 TCTCTGACGCAATGCC 162968 | ||||| | ||||| Sbjct 19136 TTTCTGATGGTATGCC 19121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552900062763240