Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq8535 197 3e-45 seq6526 178 2e-39 seq3997 150 3e-31 >seq8535 Length=22056 Score = 197 bits (218), Expect = 3e-45 Identities = 570/865 (66%), Gaps = 23/865 (3%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||| || || |||||||| || || |||||||||| || ||| ||| Sbjct 6307 CTGGTACTCCCCAACCCTCTTCTCAAAAAAATTGGTCTTCCCCTGTAAACTGATCAGCTC 6366 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCC-ATCTGTTCCAGCA 47957 ||| | ||| |||||||| |||| | | || ||| | | ||| | Sbjct 6367 CATCCAATCGAACGGGTTGGGAACACCGTACATCT-TACCACACCCGAGCGCACCCAAAA 6425 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | |||||||||| | |||||||| | ||| || |||||| || | |||| Sbjct 6426 GCCTATCCGCGACGAATTCGATGTACTGGCTCATCAGATCACCGTTCATTCCCACCAGGG 6485 Query 48018 A-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATC 48076 |||||| | || | | ||||| |||||||| ||| || || | || ||| Sbjct 6486 CGCACGGG-AGCGCGTCGCACACGAACTCTCTCTCTATCGTCACCGCGTCGGCAACGATC 6544 Query 48077 TGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCA 48136 | | || ||| ||| ||||||| || || | ||||| | ||| || Sbjct 6545 CCCCTGACTCGGTCCTCGCTCGGTTTGTGAGTCATCAACTCG---TAGAGAAGGCACGCG 6601 Query 48137 AAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGC 48196 || || | ||||||||| ||||| || ||| ||| |||| ||||| |||||| ||| Sbjct 6602 AAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGC 6661 Query 48197 ATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCC 48256 || | ||| | || ||||||||| || || || ||| || ||||||||||| ||| Sbjct 6662 ATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCC 6721 Query 48257 TCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTG-AGATCCA 48315 ||||| |||||| ||| ||||||| || |||| || |||| | | |||||| Sbjct 6722 TCCACGCACGCGAATGCGATGAGCCTTTCGGCGAACGA----TTCTGAACCGTCGATCCA 6777 Query 48316 GGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGA- 48374 | |||||| | |||||| || | | ||| || | ||||| || || |||||| Sbjct 6778 CTTCAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGGAAGAG 6837 Query 48375 --GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATCTC 48432 | ||||| ||| | | |||| | |||| |||||| |||||| || Sbjct 6838 GCGGTTCTT---CTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAGGCTGTACATTTC 6894 Query 48433 AGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTG 48492 ||||| | ||||| || ||||| ||||| ||||||||||| | || || || || Sbjct 6895 GGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGACTTG 6954 Query 48493 CACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCCCATCTGAAGCAGCAA 48551 || || | ||||| ||||| || ||||| ||| || |||||||| || || | Sbjct 6955 TACCTCCTTCATGAATC-GGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCGA 7013 Query 48552 AGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAG---CATTCCAGC 48608 ||||||| ||||| || | | ||| || ||||| | |||||| | ||| |||| Sbjct 7014 AGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAGT 7073 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 || ||| | ||| |||||||| ||| | |||||||| ||||| || || | Sbjct 7074 GGCGTTGGTCCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCTTCT 7133 Query 48669 TGTACATGCCCCATATGTCCGGATA 48693 ||||||| |||| || | ||| || Sbjct 7134 TGTACATCTCCCAGATCTGCGGGTA 7158 >seq6526 Length=28452 Score = 178 bits (196), Expect = 2e-39 Identities = 391/580 (67%), Gaps = 16/580 (3%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 ||||||| ||| || || || | ||||||||| ||||| || ||| ||| |||| ||| Sbjct 21881 TAGAGCAAGCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAG 21940 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 ||| |||||| ||||| | ||| | || ||||||||| || || || ||| || Sbjct 21941 AAGGTGAGACCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCG 22000 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 ||||||||||| ||||| | |||||||||| |||| || || |||| || ||| Sbjct 22001 GAGAAGAAGATCCCCTCGAAGCACGCGAACGCGATGAGTCTTTCGGCGAACGA----TTC 22056 Query 48302 TTGTCTG-AGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 | | | |||||| | |||||| | ||||| || | | ||| || || ||||| Sbjct 22057 TGAACCGTCGATCCATTTCAACGCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTC 22116 Query 48361 TATGGCCCGGAAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAG 48417 || || |||||| | | ||| ||| | | |||| | |||| |||||| Sbjct 22117 GATCGCGTGGAAGAGGCGGTCCTT---CTCGGCCGGGTCCCTGATGTAGGATTCGAGCAG 22173 Query 48418 CTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCT 48477 |||||| || ||||| | ||||| || ||||| ||||| ||||||||||||| Sbjct 22174 GAGGCTGTACATTTCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCG 22233 Query 48478 GGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCC 48536 || || || || || || | ||| | || || || ||||| ||| || | Sbjct 22234 CGCTTCGGCAACTTGTACCTCCTTCATGAAAC-GGCCGGCGAGGTTCTCGAGGACGATGC 22292 Query 48537 CATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA 48596 | || || || || |||||||| ||||| ||||| | ||| || ||||| | ||||| Sbjct 22293 CGTCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGA 22352 Query 48597 GAG---CATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGG 48653 | | | | |||| || ||| | ||| ||||| || ||| | |||||||| | Sbjct 22353 GGGCCTCGTCCCAGTGGCGTTGGTCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATG 22412 Query 48654 ACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 |||| || || |||||||| |||| || | ||| || Sbjct 22413 ACGCTTCAGCCTTCTTGTACATCTCCCAGATCTGCGGGTA 22452 >seq3997 Length=108068 Score = 150 bits (166), Expect = 3e-31 Identities = 385/580 (66%), Gaps = 16/580 (3%) Strand=Plus/Plus Query 48122 TAGAGCATGCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAG 48181 || |||| ||| || ||||| | ||| | ||| ||||| || ||| ||| |||| ||| Sbjct 89773 TACAGCAAGCACGCGAAGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAG 89832 Query 48182 AAGCAGAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCA 48241 || || || ||||| | ||| | || |||||||| || || || ||| || Sbjct 89833 AAAGTCAGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCG 89892 Query 48242 GAGAAGAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTC 48301 ||||||||||| |||||||| ||||||||| ||| | ||| |||| || ||| Sbjct 89893 GAGAAGAAGATCCCCTCCACGCACGCGAACGCCACGAGACGCTCGGCGAACGA----TTC 89948 Query 48302 T-TGTCTGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTC 48360 | | | |||||| || ||||| | ||||||||| | ||| || || ||||| Sbjct 89949 TGAGCCGTCGATCCATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTC 90008 Query 48361 TATGGCCCGGAAGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAG 48417 || || |||||| | | ||| ||| | |||| | |||| ||| || Sbjct 90009 GATTGCGTGGAAGAGGCGGTGCTT---CTCGGAGGAGTCCTTGATGTAGGATTCGAGGAG 90065 Query 48418 CTTTGCGTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCT 48477 ||||||||| ||||| | ||||| || ||||||||||| || ||||| || | Sbjct 90066 GAGGCTGTACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAAGCGCG 90125 Query 48478 GGCCTCAAACACCTGCACTTCTGTGGAGAATCTCTCCAGC-AGATTCTCATTGACTATCC 48536 ||||||| ||||| || || | ||| | || || |||||||| ||| || | Sbjct 90126 GGCCTCAGCGACCTGGACCTCCTTCATGAAGC-GGCCGGCGAGATTCTCGAGGACGATGC 90184 Query 48537 CATCTGAAGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA 48596 | || || || || |||||||| ||||| || | ||| || | ||||| | ||| | Sbjct 90185 CGTCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGCCTCTCGTCGGCGGTTA 90244 Query 48597 GAG---CATTCCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGG 48653 | | | |||| | | ||| | |||||||| || ||| | |||||||| | Sbjct 90245 GGGTTTGGTCCCAGTGGCGAAGGTCAGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACG 90304 Query 48654 ACGCGAGTGCTTTTTTGTACATGCCCCATATGTCCGGATA 48693 |||| ||| || |||||||| |||| || | ||| || Sbjct 90305 ACGCCTCTGCCTTCTTGTACATCTCCCAGATCTACGGGTA 90344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931221656400640