Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq3997 138 2e-27 seq6526 122 2e-22 seq8535 107 4e-18 >seq3997 Length=108068 Score = 138 bits (152), Expect = 2e-27 Identities = 383/574 (67%), Gaps = 20/574 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | || |||||| || || ||| | || || Sbjct 90335 ATCTGGGAGATGTACAAGAAGGCAGAGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTC 90276 Query 25537 GCCAAGGACATGGACGGCTGGTAC---GCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 || ||| | | |||| || | ||| || |||||| ||| || || Sbjct 90275 TCCGCTGACCTTCGCCACTGGGACCAAACCCTAACCGCCGACGAGAGGCACTTCATCTCC 90216 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| |||||||| || || || || ||||||||| || | Sbjct 90215 CACGTCCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGCCGC 90156 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | ||| || ||| || |||||| |||||| || |||||||| || ||| Sbjct 90155 TTCATGAAGGAGGTCCAGGTCGCTGAGGCCCGCGCTTTCTATGGCTTCCAGATCGCGATC 90096 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GA--CGTACATTACAGACGTC 25770 || || | ||||| ||| |||| || || || | || | ||||| | ||| | Sbjct 90095 GAGAACATCCACTCCGAGATGTA---CAGCCTCCTCCTCGAATCCTACATCAAGGACTCC 90039 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 |||||| | || || || || |||||| ||| || || | || |||||| Sbjct 90038 TCCGAGAAGCACCGCCTCTTCCACGCAATCGAGACCATCCCTTGCGTGGTGAAGAAGGCC 89979 Query 25831 CGGTGGGCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 ||||||| |||| |||||| || || |||| |||| | |||||| || || || Sbjct 89978 AAGTGGGCCCTGAAATGGATCGACGGCTCAGA----ATCGTTCGCCGAGCGTCTCGTGGC 89923 Query 25890 CTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCTC 25947 || || ||| |||||||| ||||| ||| ||| | | ||| || || || |||||| Sbjct 89922 GTTCGCGTGC-GTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGC-GCGATATTTTGGCTC 89865 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGA 26006 ||| || ||| ||||| || ||| ||||| || |||||||| ||| | ||||| Sbjct 89864 AAGAAGCGCGGGTTAATGCCGGGACTG-ACTTTCTCGAACGAGCTAATCTCGCGAGACGA 89806 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||| || ||| | || || || ||| |||| ||| Sbjct 89805 GGGCCTTCACTGCGACTTCGCGTGCTTGCTGTAC 89772 >seq6526 Length=28452 Score = 122 bits (134), Expect = 2e-22 Identities = 377/573 (66%), Gaps = 18/573 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||||||||||||||||||||| || ||| |||||| || || ||| | |||||| Sbjct 22443 ATCTGGGAGATGTACAAGAAGGCTGAAGCGTCATTCTGGACGGCGGAGGAGGTGGATCTG 22384 Query 25537 GCCAAGGACATGGACGGCTGGTAC---GCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 | ||||| | |||| || || || || |||||| |||| || |||| Sbjct 22383 TCGCAGGACCAACGCCACTGGGACGAGGCCCTCACCGCCGACGAGAAGCACTTCATCAAA 22324 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| || || || || |||||| || || | Sbjct 22323 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGCCGT 22264 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | ||| || || | || || | |||||||| ||||| || |||||| Sbjct 22263 TTCATGAAGGAGGTACAAGTTGCCGAAGCGCGGGCCTTCTACGGCTTCCAAATCGCCATC 22204 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GA--CGTACATTACAGACGTC 25770 || || | ||||| || |||| || || ||| | || | ||||| | ||| Sbjct 22203 GAGAACATCCACTCCGAAATGTA---CAGCCTCCTGCTCGAATCCTACATCAGGGACCCG 22147 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||||||| || || || || || |||||| ||| || || | | | ||||| Sbjct 22146 GCCGAGAAGGACCGCCTCTTCCACGCGATCGAGACCATCCCTTGCGTGGAAAAAAAGGCC 22087 Query 25831 CGGTGGGCCATGAAGTGGATCAACAG-CCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||| |||| |||||| || | |||| |||| | ||| | || | || Sbjct 22086 AAGTGGGCGTTGAAATGGATCGACGGTTCAGA----ATCGTTCGCCGAAAGACTCATCGC 22031 Query 25890 CTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCTC 25947 || || |||| | ||||| ||||| ||| ||| | | ||| || || || |||||| Sbjct 22030 GTTCGCGTGCT-TCGAGGGGATCTTCTTCTCCGGAAGCTTCTGC-GCGATATTTTGGCTC 21973 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAG 26007 || || ||| ||||| || || ||| || |||||||| ||| | |||||| Sbjct 21972 AAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTCGAACGAGCTGATCTCGCGAGACGAG 21913 Query 26008 GGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 || | ||| | ||||| || ||| |||||||| Sbjct 21912 GGCTTGCACTGCGATTTCGCGTGCTTGCTCTAC 21880 >seq8535 Length=22056 Score = 107 bits (118), Expect = 4e-18 Identities = 376/574 (66%), Gaps = 20/574 (3%) Strand=Plus/Minus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| || || |||||| || || || | |||||| Sbjct 7149 ATCTGGGAGATGTACAAGAAGGCCGAAGCGTCGTTCTGGACGGCGGAGGAAGTGGATCTG 7090 Query 25537 GCCAAGGACATGGACGGCTGG---TACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAG 25593 | ||||| | |||| | || || || |||||| |||| || ||| Sbjct 7089 TCGCAGGACCAACGCCACTGGGATGAGGCCCTCACCGCCGACGAGAAGCACTTCATCACC 7030 Query 25594 TACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 |||| | || ||||| || ||||| ||||| || || |||||| || | || Sbjct 7029 CACGTCCTCGCCTTCTTCGCCGCCTCAGATGGCATCGTCCTCGAGAACCTCGCTGGCCGA 6970 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATC 25713 |||| | ||| || || || || || |||||||| ||||| || |||||| Sbjct 6969 TTCATGAAGGAGGTACAAGTCGCCGAAGCGCGCGCCTTCTACGGCTTCCAAATCGCCATC 6910 Query 25714 GAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT-GA--CGTACATTACAGACGTC 25770 || || | ||||| || |||| || || ||| | || | ||||| | ||| Sbjct 6909 GAGAACATCCACTCCGAAATGTA---CAGCCTCCTGCTCGAATCCTACATCAAGGACTCG 6853 Query 25771 GCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCG 25830 ||||||| | || || || || |||||| | | || || | | | ||||| Sbjct 6852 GCCGAGAAGAACCGCCTCTTCCACGCGATCGAGACCGTCCCTTGCGTGGAAAAAAAGGCA 6793 Query 25831 CGGTGGGCCATGAAGTGGATCAACAG-CCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGC 25889 |||||| ||||||||||| || | |||| |||| | ||| |||| | || Sbjct 6792 AAGTGGGCGTTGAAGTGGATCGACGGTTCAGA----ATCGTTCGCCGAAAGGCTCATCGC 6737 Query 25890 CTTTGC-TGCTGTGGAGGGCATCTTTTTCAGCGG-TTCGTTTGCGGCCATCTTCTGGCTC 25947 || || ||| |||||||| ||||| ||| ||| | | ||| || || || |||||| Sbjct 6736 ATTCGCGTGC-GTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGC-GCGATATTTTGGCTC 6679 Query 25948 AAGCAGAAGGGGACCATGCCCGGGCTGTACTTT-TCCAACGAGCTCATCAGCAGGGACGA 26006 || || ||| ||||| || || ||||| || |||||||| ||| | ||||| Sbjct 6678 AAAAAGCGCGGGTTAATGCCGGGTCT-CACTTTCTCGAACGAGCTGATCTCGCGAGACGA 6620 Query 26007 GGGTCTCCACAGAGATTTTGCCTGCCTGCTCTAC 26040 ||| | ||| | ||||| || ||||| |||||| Sbjct 6619 GGGCTTGCACTGCGATTTCGCGTGCCTTCTCTAC 6586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928534554226240