Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq16707 547 2e-151 seq647 260 4e-65 seq6733 165 2e-36 seq574 134 4e-27 seq20 134 4e-27 seq24083 131 5e-26 seq6008 109 2e-19 seq10199 87.8 5e-13 seq4124 86.0 2e-12 >seq16707 Length=103149 Score = 547 bits (606), Expect = 2e-151 Identities = 719/985 (73%), Gaps = 16/985 (2%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | ||||| || Sbjct 22085 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 22144 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||||| | |||||||| ||| | || | ||| | | | ||||| Sbjct 22145 AGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACA-- 22202 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| |||||||| || ||||| ||||||||||| || || | || || Sbjct 22203 -GATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGT 22261 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTT 18070 | ||| || | || |||||||||||||||||||| |||| | | ||||| Sbjct 22262 GAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTT 22321 Query 18071 AAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATA 18130 ||| |||||||| |||||||| | || ||||| || |||||||| || ||||||||||| Sbjct 22322 AAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATA 22381 Query 18131 CGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTC 18190 || ||||| ||||| |||||| | || || | || ||| || ||||| ||||| Sbjct 22382 AGTTTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTC 22441 Query 18191 TCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACC 18247 || || || | |||| || |||| || ||||||||| ||||| | || || Sbjct 22442 CCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCGCC 22498 Query 18248 GAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTG 18307 |||||| || || ||||| | ||| || || |||||||||||||| || || || || || Sbjct 22499 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 22558 Query 18308 GAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACT 18367 |||||| | ||| || ||||||||||| || || | ||||||||||||||||||||| Sbjct 22559 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 22618 Query 18368 CCCTTGTCCAAAAGGATAAA-CGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAA 18425 ||||| |||| ||| |||| | ||||| || | || | |||||||| || || || ||| Sbjct 22619 TCCTTGACCAATAGGGTAAATCAAGAAA-ACAGCAGTA-GCAGCTGCAACAGGAGCTGAA 22676 Query 18426 TAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCC 18485 || |||||| |||||| || |||||||| || | |||| |||||||| | || ||| Sbjct 22677 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCC 22736 Query 18486 ATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTA 18545 || ||| || | || | | ||||| | ||||| || | ||| || || || || Sbjct 22737 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTG 22796 Query 18546 TATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCG 18605 |||||||| || || | | ||| ||||||||||||||||| ||||| | ||| || || Sbjct 22797 TATAACCATTCATCAACAGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCT 22856 Query 18606 TTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAG 18665 ||| | || | || || || || || || |||||||| || ||||| | || || Sbjct 22857 GCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAA 22916 Query 18666 ACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAAT 18725 |||||||||||||||||||| || || || ||||| ||||| | || || || | |||| Sbjct 22917 ACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAAT 22976 Query 18726 GCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGG 18785 | | || ||||||||| | | ||||||||| | || || ||||| || | ||| || Sbjct 22977 ACAGAAGTTGCGGTTAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGA 23036 Query 18786 CGGTTGTTTGTACTCGTAACCCAGT 18810 ||||| | || || || | ||||| Sbjct 23037 CGGTTTTCGGTGCTAGTTATCCAGT 23061 >seq647 Length=36880 Score = 260 bits (288), Expect = 4e-65 Identities = 376/524 (72%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCC-CTGCAACACCGAGCATATGGAA 18277 || ||||||||| |||| | || |||||||||| | || | ||| | ||| || || Sbjct 13657 CCATGCATAGCACTGAATGGGGAGCCGCCGAATACCCACAGCTATACCTAACATGTGAAA 13716 Query 18278 CGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCT 18337 | ||||||||||| ||||| || || |||| ||||| |||||| ||||||||||| Sbjct 13717 TGTGTGCATAAGGATGTTGTGCTCAGCATGGAGTACGATCATGAAGTTGAAAGTACCAGA 13776 Query 18338 AATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATA 18396 || || | ||||||||||| ||| ||||| |||| |||| || || | | ||||| | Sbjct 13777 GATTCCTACAGGCATACCATTAGAAAAACTTCCTTAACCAATTGGGTAGATCAAGAAA-A 13835 Query 18397 CTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCT 18455 | | || || ||||||| || | || ||||| |||||| |||| | || ||||||| Sbjct 13836 CAGCAGTAG-CAGCTGCAACAAGAGCTGAATATGCAACAACAATCAAAGGTTGCATACCC 13894 Query 18456 AGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGG 18515 | | | ||||||||||| | || ||||||||| | | || | | ||||| Sbjct 13895 AAACGGAAGCTAAGTTCCCACTCACGACCCATGTAACACACTACACCAAGCAAGAAGTGT 13954 Query 18516 AACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCC 18575 | ||||| || | ||| || || || || |||||||| || || | || ||| |||||| Sbjct 13955 AGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAATGGATGCCGCTTCC 14014 Query 18576 CAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATG 18635 ||||| ||||| ||||| | ||| || || |||| | || || | ||||| || Sbjct 14015 CAGATCGGGTAAAAGTGCAAACCTATAGCTGTAGAAGTAGGATTAATGACACCTGAGATA 14074 Query 18636 ATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACG 18695 || |||||||| || |||| | ||| || |||||||||||||||||||| || || Sbjct 14075 ATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAGCATCTACT 14134 Query 18696 GGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGT 18739 ||||||||||||| || || | | |||| | | || ||| || Sbjct 14135 GGAGGAGCAGCAATGAAGGCGAAAATAAATACAGAAGTTGCAGT 14178 >seq6733 Length=89479 Score = 165 bits (182), Expect = 2e-36 Identities = 234/328 (71%), Gaps = 1/328 (0%) Strand=Plus/Minus Query 18463 AACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAA 18522 ||||||||| || | || |||||||| || | || | | ||||| | |||| Sbjct 9087 AACTAAGTTTTCACTCACGATCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAA 9028 Query 18523 TGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTG 18582 | | | ||| || || ||||| | |||| || || | || ||| |||||| |||||| Sbjct 9027 TTATCTCATAAGGACCACCGTTGGACCACCATTCATCAACGGATGCCGCTTCC-AGATTG 8969 Query 18583 GGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGT 18642 |||| ||||| | ||| || || ||| | || | || || ||||| || || |||| Sbjct 8968 GGTAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGT 8909 Query 18643 TTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAG 18702 ||||||| |||| | ||| || |||||||||||||| ||||| || || || ||||||| Sbjct 8908 TTCCATAAAGTAGAGATCCAGAAACAGGCTCACGAATCCCATCAATATCTACTGGAGGAG 8849 Query 18703 CAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTA 18762 |||||| || || || | |||| | | || ||||||||| | | ||||||||| | | Sbjct 8848 CAGCAATGAAGGCGATAATAAATACAGAAGTTGCGGTTAATAAGGTAGGGATCATCAAAA 8789 Query 18763 CCCCAAACCACCCCACGTAGAGGCGGTT 18790 | ||||||| || | ||| || |||| Sbjct 8788 CACCAAACCGTCCAATGTAAAGATGGTT 8761 >seq574 Length=41708 Score = 134 bits (148), Expect = 4e-27 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | ||||| || Sbjct 2490 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 2431 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 2430 AGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACA-- 2373 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 ||||||||||| ||||| ||||| || || |||||||||||| ||| || | || || Sbjct 2372 -GATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 2314 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTA 18054 | ||| || | || ||||||||||| | ||||||||||| Sbjct 2313 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTA 2270 >seq20 Length=236725 Score = 134 bits (148), Expect = 4e-27 Identities = 165/224 (74%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | ||||| || Sbjct 78632 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 78573 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | |||||| Sbjct 78572 AGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAA- 78514 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 |||||||||| ||||| ||||| || || |||||||||||| ||| || | || || Sbjct 78513 --ATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 78456 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTA 18054 | ||| || | || ||||||||||| | ||||||||||| Sbjct 78455 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTA 78412 >seq24083 Length=1989 Score = 131 bits (144), Expect = 5e-26 Identities = 164/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | ||||| || Sbjct 961 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 902 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | ||||| Sbjct 901 AGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACA-- 844 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 |||||||||| ||||| ||||| || || |||||||||||| ||| || | || || Sbjct 843 -TATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 785 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTA 18054 | ||| || | || ||||||||||| | ||||||||||| Sbjct 784 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTA 741 >seq6008 Length=80333 Score = 109 bits (120), Expect = 2e-19 Identities = 151/210 (72%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || |||| ||||| | ||||| || Sbjct 50466 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAGATT 50525 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCT---CCAGCTGCTACAAT 17950 ||| | ||| | | |||||||| ||| | || | ||| | | | |||||| Sbjct 50526 AGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTACCAACTACAA- 50584 Query 17951 GGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGT 18010 |||||||||| ||||| ||||| || || |||||||||||| ||| || | || || Sbjct 50585 --ATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 50642 Query 18011 AAGCCATATGCAAGTGACGGGCCAAGCAGC 18040 | ||| || | || ||||||||||| Sbjct 50643 GAACCAGATACCTACTACAGGCCAAGCAGC 50672 >seq10199 Length=21994 Score = 87.8 bits (96), Expect = 5e-13 Identities = 134/191 (70%), Gaps = 10/191 (5%) Strand=Plus/Minus Query 17970 CCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAGTGACG 18029 ||||| || || |||||||||||| ||| || | || || | ||| || | || Sbjct 14408 CCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACA 14349 Query 18030 GGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAG 18089 |||||||||| | ||||||||||| | ||||| || |||||||| |||||| Sbjct 14348 GGCCAAGCAGTTAGGAAGAAATGTAAAGAAAGAGAGTTGTTGAAACTAGCATATTGGAAG 14289 Query 18090 ATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCA 18149 || ||| ||||||||||| || || |||||||| || ||||| ||||| || Sbjct 14288 AT--------CAA--TAGCCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACCG 14239 Query 18150 AATTTATATCC 18160 ||| | || || Sbjct 14238 AATCTGTAGCC 14228 >seq4124 Length=71480 Score = 86.0 bits (94), Expect = 2e-12 Identities = 98/129 (76%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 18348 GGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGC 18406 |||||||||||||| ||||| ||||| |||| || || | | ||||| || | | || Sbjct 19121 GGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAA-ACAGCAATAGC 19179 Query 18407 AGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACT 18466 |||||| || || || ||||| |||||| |||||| | |||||||| | | |||| Sbjct 19180 AGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAAGTCGCATACCCAAACGGAAACT 19239 Query 18467 AAGTTCCCA 18475 ||||||||| Sbjct 19240 AAGTTCCCA 19248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151270384874774