Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq16707 488 2e-133
seq647 215 2e-51
seq574 150 5e-32
seq24083 147 6e-31
seq20 147 6e-31
seq10199 141 3e-29
seq6008 125 2e-24
seq6733 113 1e-20
seq7956 87.8 5e-13
seq4124 82.4 2e-11
>seq16707
Length=103149
Score = 488 bits (540), Expect = 2e-133
Identities = 684/957 (71%), Gaps = 2/957 (0%)
Strand=Plus/Plus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || |||||||| || || || || |||||||| || || | ||||| ||
Sbjct 22086 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 22145
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|||||||| | || |||||||| || || || || | || | | | | | ||||
Sbjct 22146 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 22205
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
||||| || ||||| || || | ||||||||||| ||| | || | |||| |||
Sbjct 22206 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 22265
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710
||||| ||||| |||||||| ||||| | ||||| || | | ||| || || |||||
Sbjct 22266 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 22325
Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770
||||||||||||||||| | || |||||||| || ||||| || |||||||| |||||
Sbjct 22326 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTT 22385
Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830
||||||||||||||||| ||||||| | || || | | |||||| || || |
Sbjct 22386 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 22445
Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890
|| | || || |||| | ||| ||||||||| ||| | || || |||||
Sbjct 22446 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 22505
Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950
|| || ||||| | ||||||||| ||||||||||| || || ||||| |||||||| ||
Sbjct 22506 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 22565
Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010
| ||| ||||||| || || ||||| || || |||||| ||||||| ||| || ||
Sbjct 22566 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 22625
Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070
|||| || |||| | ||| |||||||| ||||| || |||||||| || || ||||||
Sbjct 22626 CCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 22685
Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130
||||| || | ||| || || || | || ||||||||||| || ||||| ||| |
Sbjct 22686 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 22745
Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190
|| |||| | |||||| | || | || | | |||||||| ||||| | ||||
Sbjct 22746 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 22805
Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250
||||||| | || |||||||| |||||||| ||||| | || || || | |
Sbjct 22806 TCATCAACAGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTA 22865
Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310
|||| | ||| || || || || ||||| || || | | || |||| || || ||
Sbjct 22866 GGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 22925
Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370
|| || ||||| || || || || || || | | |||||||||||||| || ||
Sbjct 22926 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 22985
Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426
|||| || ||| | || ||||| | || ||||||||||| | |||||||||||
Sbjct 22986 GCGGTTAATAAGGTA-GGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTT 23041
>seq647
Length=36880
Score = 215 bits (238), Expect = 2e-51
Identities = 347/497 (70%), Gaps = 4/497 (1%)
Strand=Plus/Plus
Query 21879 CCACCAAATACGC-CGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTC 21937
|| || ||||| | | || | ||| | ||||||||| | |||||||| || ||||||||
Sbjct 13681 CCGCCGAATACCCACAGCTATACCTAACATGTGAAATGTGTGCATAAGGATGTTGTGCTC 13740
Query 21938 AGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGA 21997
||| |||| || | |||| ||||||| || || || || || | |||||| ||| |||
Sbjct 13741 AGCATGGAGTACGATCATGAAGTTGAAAGTACCAGAGATTCCTACAGGCATACCATTAGA 13800
Query 21998 AAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGC 22057
|||| || | |||| || || | | ||| |||||||| ||||| || ||| ||||
Sbjct 13801 AAAACTTCCTTAACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAAGAGC 13860
Query 22058 AGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCG 22117
|| || ||||||| ||| | || ||| || | || |||||||||||||||| ||
Sbjct 13861 TGAATATGCAACAACAATCAAAGGTTGCATACCCAAACGGAAGCTAAGTTCCCACTCACG 13920
Query 22118 TCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCC 22177
||||||||| | || |||| | |||||| | || | || | | ||||||||
Sbjct 13921 ACCCATGTAACACACTACACCAAGCAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCC 13980
Query 22178 GTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGAT 22237
||||| | ||||||||||| | || |||||||| || ||||| ||||| | || ||
Sbjct 13981 ATTGTATAACCATTCATCAATGGATGCCGCTTCCCAGATCGGGTAAAAGTGCAAACCTAT 14040
Query 22238 GGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCC 22297
|| || | ||| | | | ||||| || || ||||| || || | || || ||
Sbjct 14041 AGCTGTAGAAGTAGGATTAATGACACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCC 14100
Query 22298 AGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAAT 22357
|| || || || || || ||||| || || || || || ||| ||||||| |||
Sbjct 14101 AGAAACAGGCTCACGAATACCATCAGCATCTACTGGAGGAGCAGCAATGAAGGCGAAAAT 14160
Query 22358 AAA---ACAAGTTGTAG 22371
||| | |||||| ||
Sbjct 14161 AAATACAGAAGTTGCAG 14177
>seq574
Length=41708
Score = 150 bits (166), Expect = 5e-32
Identities = 164/218 (75%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || |||||||| || || || || |||||||| || || | ||||| ||
Sbjct 2489 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2430
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|||||||||| || ||||||||||| || || || | || | | | | | | ||||
Sbjct 2429 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGAT 2370
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
||||| || ||||||||||| | |||||||||||| || | || | |||| |||
Sbjct 2369 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 2310
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATG 21688
|| |||||||| |||||||| ||||| || ||||||||
Sbjct 2309 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATG 2272
>seq24083
Length=1989
Score = 147 bits (162), Expect = 6e-31
Identities = 176/239 (74%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || |||||||| || || || || |||||||| || || | ||||| ||
Sbjct 960 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 901
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|||||||||| || ||||||||||| || || || | || | | | | | | | ||
Sbjct 900 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACATAT 841
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
||||| || ||||||||||| | |||||||||||| || | || | |||| |||
Sbjct 840 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 781
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAA 21709
|| |||||||| |||||||| ||||| || |||||||| | | ||| || || || ||
Sbjct 780 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTCAA 722
>seq20
Length=236725
Score = 147 bits (162), Expect = 6e-31
Identities = 176/239 (74%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || |||||||| || || || || |||||||| || || | ||||| ||
Sbjct 78631 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 78572
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|||||||||| || ||||||||||| || || || | || | | | | | | | ||
Sbjct 78571 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAAAT 78512
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
||||| || ||||||||||| | |||||||||||| || | || | |||| |||
Sbjct 78511 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 78452
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAA 21709
|| |||||||| |||||||| ||||| || |||||||| | | ||| || || || ||
Sbjct 78451 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTCAA 78393
>seq10199
Length=21994
Score = 141 bits (156), Expect = 3e-29
Identities = 194/275 (71%), Gaps = 22/275 (8%)
Strand=Plus/Minus
Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581
||||| || |||||||||| || |||||||||||||| || || | || | | | |
Sbjct 14480 CCAAGATTAGCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGGCCTTGACTATCA 14421
Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641
| | |||||| |||||| | |||||||||||| || | || |
Sbjct 14420 ACTACAGATTG------------ACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAA 14373
Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701
|||| ||||| |||||||| |||||||| |||| || |||||||| | | | | ||
Sbjct 14372 GCAGTGAACCAGATACCTACTACAGGCCAAGCAGTTAGGAAGAAATGTAAAGAAAGAGAG 14313
Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761
|| || || ||||||||||||||||| ||||||| |||||||| || |||
Sbjct 14312 TTGTTGAAACTAGCATATTGGAAGAT----------CAATAGCCATGAGCAGCTACGATA 14263
Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796
|| ||||| |||||||||||||| || |||| ||
Sbjct 14262 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAGCC 14228
>seq6008
Length=80333
Score = 125 bits (138), Expect = 2e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || |||||||| || || || || ||||||| || | | ||||| ||
Sbjct 50467 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAGATTA 50526
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|||||||||| || ||||||||||| || || || | || | | | | | | | ||
Sbjct 50527 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTACCAACTACAAAT 50586
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650
||||| || ||||||||||| | |||||||||||| || | || | |||| |||
Sbjct 50587 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 50646
Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAG 21679
|| |||||||| |||||||| ||||| ||
Sbjct 50647 CAGATACCTACTACAGGCCAAGCAGCTAG 50675
>seq6733
Length=89479
Score = 113 bits (124), Expect = 1e-20
Identities = 227/333 (68%), Gaps = 3/333 (1%)
Strand=Plus/Minus
Query 22101 CTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTG 22160
||||||| ||||| || |||||||| | || |||| | |||||| | || |
Sbjct 9085 CTAAGTTTTCACTCACGATCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 9026
Query 22161 AGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGG 22220
| | | ||||| |||||| || ||||||||||| | || |||||| | ||||||
Sbjct 9025 ATCTCATAAGGACCACCGTTGGACCACCATTCATCAACGGATGCCGCTTCC-AGATTGGG 8967
Query 22221 TAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTA 22280
|| ||||| | || || || | | |||| | ||| ||||| || || |||||
Sbjct 8966 TAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTT 8907
Query 22281 CCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCG 22340
||||| | || || |||| || || || || || ||||| || || || || || ||
Sbjct 8906 CCATAAAGTAGAGATCCAGAAACAGGCTCACGAATCCCATCAATATCTACTGGAGGAGCA 8847
Query 22341 CCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGAC 22399
||| |||||||||||||| || || |||| || ||| | || ||||| | ||
Sbjct 8846 GCAATGAAGGCGATAATAAATACAGAAGTTGCGGTTAATAAGGTA-GGGATCATCAAAAC 8788
Query 22400 TCCGAACCATCCTACATAAAGACGGTTATTAGT 22432
|| |||| ||| | |||||| |||| | |||
Sbjct 8787 ACCAAACCGTCCAATGTAAAGATGGTTTTCAGT 8755
>seq7956
Length=50133
Score = 87.8 bits (96), Expect = 5e-13
Identities = 127/177 (72%), Gaps = 2/177 (1%)
Strand=Plus/Plus
Query 21513 ACCTCAAAGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCAC-CTGTCC 21571
||| ||| ||||| || |||||||| || ||||||||| | || || || ||| ||
Sbjct 30636 ACCACAAGACCAAGATTAATACGGTTAATGATATCAGCCCAGATATTAATTACACTG-CC 30694
Query 21572 ATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGA 21631
| | | | | | ||||||||| || ||||||||||| | |||||||||||| ||
Sbjct 30695 TTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGTT 30754
Query 21632 CACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATG 21688
| | | |||| || || |||||||| | |||||| |||| || ||||||||
Sbjct 30755 GATATCTAAAGCAGTGAATCAGATACCTACTAAAGGCCAAGCAGTTAGGAAGAAATG 30811
>seq4124
Length=71480
Score = 82.4 bits (90), Expect = 2e-11
Identities = 98/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 21982 AGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCG 22041
|||||||| ||||||||||| || || |||| || || | | ||| |||||| | |
Sbjct 19119 AGGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAATAG 19178
Query 22042 CAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGC 22101
|||| || |||||||| || || |||||| ||||| | | ||| || | || | |
Sbjct 19179 CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAAGTCGCATACCCAAACGGAAAC 19238
Query 22102 TAAGTTCCCACTC 22114
|||||||||||||
Sbjct 19239 TAAGTTCCCACTC 19251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146161606465380
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