Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq16707 488 2e-133 seq647 215 2e-51 seq574 150 5e-32 seq24083 147 6e-31 seq20 147 6e-31 seq10199 141 3e-29 seq6008 125 2e-24 seq6733 113 1e-20 seq7956 87.8 5e-13 seq4124 82.4 2e-11 >seq16707 Length=103149 Score = 488 bits (540), Expect = 2e-133 Identities = 684/957 (71%), Gaps = 2/957 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | ||||| || Sbjct 22086 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 22145 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||| | || |||||||| || || || || | || | | | | | |||| Sbjct 22146 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 22205 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||| || || | ||||||||||| ||| | || | |||| ||| Sbjct 22206 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 22265 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAG 21710 ||||| ||||| |||||||| ||||| | ||||| || | | ||| || || ||||| Sbjct 22266 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 22325 Query 21711 CTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTC 21770 ||||||||||||||||| | || |||||||| || ||||| || |||||||| ||||| Sbjct 22326 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTT 22385 Query 21771 TCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGA 21830 ||||||||||||||||| ||||||| | || || | | |||||| || || | Sbjct 22386 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 22445 Query 21831 ATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACG 21890 || | || || |||| | ||| ||||||||| ||| | || || ||||| Sbjct 22446 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 22505 Query 21891 CCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACC 21950 || || ||||| | ||||||||| ||||||||||| || || ||||| |||||||| || Sbjct 22506 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 22565 Query 21951 AGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGT 22010 | ||| ||||||| || || ||||| || || |||||| ||||||| ||| || || Sbjct 22566 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 22625 Query 22011 CCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACA 22070 |||| || |||| | ||| |||||||| ||||| || |||||||| || || |||||| Sbjct 22626 CCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 22685 Query 22071 AAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCA 22130 ||||| || | ||| || || || | || ||||||||||| || ||||| ||| | Sbjct 22686 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 22745 Query 22131 AAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCAT 22190 || |||| | |||||| | || | || | | |||||||| ||||| | |||| Sbjct 22746 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 22805 Query 22191 TCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTGCTC 22250 ||||||| | || |||||||| |||||||| ||||| | || || || | | Sbjct 22806 TCATCAACAGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTA 22865 Query 22251 GGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGTTCT 22310 |||| | ||| || || || || ||||| || || | | || |||| || || || Sbjct 22866 GGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 22925 Query 22311 CGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTTGTA 22370 || || ||||| || || || || || || | | |||||||||||||| || || Sbjct 22926 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 22985 Query 22371 GCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 |||| || ||| | || ||||| | || ||||||||||| | ||||||||||| Sbjct 22986 GCGGTTAATAAGGTA-GGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTT 23041 >seq647 Length=36880 Score = 215 bits (238), Expect = 2e-51 Identities = 347/497 (70%), Gaps = 4/497 (1%) Strand=Plus/Plus Query 21879 CCACCAAATACGC-CGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTC 21937 || || ||||| | | || | ||| | ||||||||| | |||||||| || |||||||| Sbjct 13681 CCGCCGAATACCCACAGCTATACCTAACATGTGAAATGTGTGCATAAGGATGTTGTGCTC 13740 Query 21938 AGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGA 21997 ||| |||| || | |||| ||||||| || || || || || | |||||| ||| ||| Sbjct 13741 AGCATGGAGTACGATCATGAAGTTGAAAGTACCAGAGATTCCTACAGGCATACCATTAGA 13800 Query 21998 AAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGC 22057 |||| || | |||| || || | | ||| |||||||| ||||| || ||| |||| Sbjct 13801 AAAACTTCCTTAACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAAGAGC 13860 Query 22058 AGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCG 22117 || || ||||||| ||| | || ||| || | || |||||||||||||||| || Sbjct 13861 TGAATATGCAACAACAATCAAAGGTTGCATACCCAAACGGAAGCTAAGTTCCCACTCACG 13920 Query 22118 TCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCC 22177 ||||||||| | || |||| | |||||| | || | || | | |||||||| Sbjct 13921 ACCCATGTAACACACTACACCAAGCAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCC 13980 Query 22178 GTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGAT 22237 ||||| | ||||||||||| | || |||||||| || ||||| ||||| | || || Sbjct 13981 ATTGTATAACCATTCATCAATGGATGCCGCTTCCCAGATCGGGTAAAAGTGCAAACCTAT 14040 Query 22238 GGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCC 22297 || || | ||| | | | ||||| || || ||||| || || | || || || Sbjct 14041 AGCTGTAGAAGTAGGATTAATGACACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCC 14100 Query 22298 AGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAAT 22357 || || || || || || ||||| || || || || || ||| ||||||| ||| Sbjct 14101 AGAAACAGGCTCACGAATACCATCAGCATCTACTGGAGGAGCAGCAATGAAGGCGAAAAT 14160 Query 22358 AAA---ACAAGTTGTAG 22371 ||| | |||||| || Sbjct 14161 AAATACAGAAGTTGCAG 14177 >seq574 Length=41708 Score = 150 bits (166), Expect = 5e-32 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | ||||| || Sbjct 2489 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2430 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| || ||||||||||| || || || | || | | | | | | |||| Sbjct 2429 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGAT 2370 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | |||||||||||| || | || | |||| ||| Sbjct 2369 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 2310 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATG 21688 || |||||||| |||||||| ||||| || |||||||| Sbjct 2309 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATG 2272 >seq24083 Length=1989 Score = 147 bits (162), Expect = 6e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | ||||| || Sbjct 960 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 901 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| || ||||||||||| || || || | || | | | | | | | || Sbjct 900 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACATAT 841 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | |||||||||||| || | || | |||| ||| Sbjct 840 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 781 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAA 21709 || |||||||| |||||||| ||||| || |||||||| | | ||| || || || || Sbjct 780 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTCAA 722 >seq20 Length=236725 Score = 147 bits (162), Expect = 6e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | ||||| || Sbjct 78631 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 78572 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| || ||||||||||| || || || | || | | | | | | | || Sbjct 78571 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAAAT 78512 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | |||||||||||| || | || | |||| ||| Sbjct 78511 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 78452 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAA 21709 || |||||||| |||||||| ||||| || |||||||| | | ||| || || || || Sbjct 78451 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTCAA 78393 >seq10199 Length=21994 Score = 141 bits (156), Expect = 3e-29 Identities = 194/275 (71%), Gaps = 22/275 (8%) Strand=Plus/Minus Query 21522 CCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCT 21581 ||||| || |||||||||| || |||||||||||||| || || | || | | | | Sbjct 14480 CCAAGATTAGCACGGTTAATGATATCAGCCCAGGTGTTAATTACACGGCCTTGACTATCA 14421 Query 21582 AGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGC 21641 | | |||||| |||||| | |||||||||||| || | || | Sbjct 14420 ACTACAGATTG------------ACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAA 14373 Query 21642 GCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAA 21701 |||| ||||| |||||||| |||||||| |||| || |||||||| | | | | || Sbjct 14372 GCAGTGAACCAGATACCTACTACAGGCCAAGCAGTTAGGAAGAAATGTAAAGAAAGAGAG 14313 Query 21702 TTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATA 21761 || || || ||||||||||||||||| ||||||| |||||||| || ||| Sbjct 14312 TTGTTGAAACTAGCATATTGGAAGAT----------CAATAGCCATGAGCAGCTACGATA 14263 Query 21762 TTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796 || ||||| |||||||||||||| || |||| || Sbjct 14262 TTATAAGTTTCTTCCTCTTGACCGAATCTGTAGCC 14228 >seq6008 Length=80333 Score = 125 bits (138), Expect = 2e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || ||||||| || | | ||||| || Sbjct 50467 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAGATTA 50526 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||||||||| || ||||||||||| || || || | || | | | | | | | || Sbjct 50527 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTACCAACTACAAAT 50586 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAAC 21650 ||||| || ||||||||||| | |||||||||||| || | || | |||| ||| Sbjct 50587 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 50646 Query 21651 CAAATACCTACAACAGGCCAGGCAGCAAG 21679 || |||||||| |||||||| ||||| || Sbjct 50647 CAGATACCTACTACAGGCCAAGCAGCTAG 50675 >seq6733 Length=89479 Score = 113 bits (124), Expect = 1e-20 Identities = 227/333 (68%), Gaps = 3/333 (1%) Strand=Plus/Minus Query 22101 CTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTG 22160 ||||||| ||||| || |||||||| | || |||| | |||||| | || | Sbjct 9085 CTAAGTTTTCACTCACGATCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATT 9026 Query 22161 AGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGG 22220 | | | ||||| |||||| || ||||||||||| | || |||||| | |||||| Sbjct 9025 ATCTCATAAGGACCACCGTTGGACCACCATTCATCAACGGATGCCGCTTCC-AGATTGGG 8967 Query 22221 TAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTA 22280 || ||||| | || || || | | |||| | ||| ||||| || || ||||| Sbjct 8966 TAAAAGTGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTT 8907 Query 22281 CCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCG 22340 ||||| | || || |||| || || || || || ||||| || || || || || || Sbjct 8906 CCATAAAGTAGAGATCCAGAAACAGGCTCACGAATCCCATCAATATCTACTGGAGGAGCA 8847 Query 22341 CCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGAC 22399 ||| |||||||||||||| || || |||| || ||| | || ||||| | || Sbjct 8846 GCAATGAAGGCGATAATAAATACAGAAGTTGCGGTTAATAAGGTA-GGGATCATCAAAAC 8788 Query 22400 TCCGAACCATCCTACATAAAGACGGTTATTAGT 22432 || |||| ||| | |||||| |||| | ||| Sbjct 8787 ACCAAACCGTCCAATGTAAAGATGGTTTTCAGT 8755 >seq7956 Length=50133 Score = 87.8 bits (96), Expect = 5e-13 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 21513 ACCTCAAAGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCAC-CTGTCC 21571 ||| ||| ||||| || |||||||| || ||||||||| | || || || ||| || Sbjct 30636 ACCACAAGACCAAGATTAATACGGTTAATGATATCAGCCCAGATATTAATTACACTG-CC 30694 Query 21572 ATCAGCAGCTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGA 21631 | | | | | | ||||||||| || ||||||||||| | |||||||||||| || Sbjct 30695 TTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGTT 30754 Query 21632 CACGCCAAGCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATG 21688 | | | |||| || || |||||||| | |||||| |||| || |||||||| Sbjct 30755 GATATCTAAAGCAGTGAATCAGATACCTACTAAAGGCCAAGCAGTTAGGAAGAAATG 30811 >seq4124 Length=71480 Score = 82.4 bits (90), Expect = 2e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 21982 AGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCG 22041 |||||||| ||||||||||| || || |||| || || | | ||| |||||| | | Sbjct 19119 AGGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAATAG 19178 Query 22042 CAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGC 22101 |||| || |||||||| || || |||||| ||||| | | ||| || | || | | Sbjct 19179 CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAAGTCGCATACCCAAACGGAAAC 19238 Query 22102 TAAGTTCCCACTC 22114 ||||||||||||| Sbjct 19239 TAAGTTCCCACTC 19251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146161606465380