Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq15031 154 2e-32
seq3997 141 1e-28
seq15694 131 2e-25
seq6526 91.5 2e-13
seq8535 89.7 6e-13
seq15419 87.8 2e-12
seq3070 86.0 7e-12
seq838 86.0 7e-12
>seq15031
Length=67428
Score = 154 bits (170), Expect = 2e-32
Identities = 289/421 (69%), Gaps = 8/421 (2%)
Strand=Plus/Minus
Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290
||| | ||||| ||||| ||| | |||||||| | || | ||| || |||||
Sbjct 39813 GAGGTGGTGGAGTTTCTGAAGAAGCCCGAGAGGTTCACTGCAGTTGGGGCTCGTATCCCT 39754
Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350
||| | ||||| | ||| ||||| || || |||||||| || ||| || ||
Sbjct 39753 AAAGGAGTTCTTCTTGTTGGTCCTCCAGGAACTGGGAAGACCCTGCTGGCCAAGGCGATT 39694
Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408
|| |||||| || ||| ||||| || || | |||| || | || || |||||||
Sbjct 39693 GCTGGTGAAGCAGGTGTTCCATTTTTCTCCATT--TCTGGTTCAGAGTTCGTAGAGATGT 39636
Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468
|||||||||| |||||| |||| || ||||| || | | ||| || ||| ||
Sbjct 39635 TTGTTGGTGTTGGTGCCTCTCGGGTCCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCAC 39576
Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526
| || |||||||| ||||||| |||||||| || || | |||| | | |||| | |
Sbjct 39575 CCTGCATTGTCTTTGTTGATGAAATTGATGCTGTTGGGAGGCAAAGAGGAACTGGAATCG 39516
Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586
| | || |||||| || |||||||| || |||| || || | || || ||||||||
Sbjct 39515 GAGG--AGGAAATGATGAAAGAGAACAGACCCTTAACCAGCTTTTGACAGAAATGGATGG 39458
Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
||||| | ||||| | | |||||||| || ||||| || | ||||| |||||
Sbjct 39457 TTTTGAAGGAAACACTGGTGTCATTGTTATTGCAGCAACTAACCGTGCTGATATTCTTGA 39398
Query 175647 T 175647
|
Sbjct 39397 T 39397
>seq3997
Length=108068
Score = 141 bits (156), Expect = 1e-28
Identities = 339/502 (68%), Gaps = 17/502 (3%)
Strand=Plus/Minus
Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACA-CAAAGTCTCGCTCCTTCGCCGAGC 65080
||||||||| || ||||| |||||||| | ||| | || ||| ||||||||||
Sbjct 89988 GAAGAAGGCCAAGTGGGCCCTGAAATGGATCGACGGCTCAGAATCG----TTCGCCGAGC 89933
Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140
| || | ||||| ||||| |||||||| |||||||||||||| |||||||| || |
Sbjct 89932 GTCTCGTGGCGTTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATAT 89873
Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200
|||| | |||||||| || | ||||| || || ||||| || || || || || |
Sbjct 89872 TTTGGCTCAAGAAGCGCGGGTTAATGCCGGGACTGACTTTCTCGAACGAGCTAATCTCGC 89813
Query 65201 GAGATGAGGGTCTCCACCAGGAGTTTGCCGTG-GAGCTCTTCAAGACTTTGCGTAATAGA 65259
|||| ||||| || ||| || || | |||| ||| | | || || || | |
Sbjct 89812 GAGACGAGGGCCTTCACTGCGACTTCG-CGTGCTTGCTGTACGAGTTACTGAGTCAGAAG 89754
Query 65260 CCCA-CTACCGAAACTATCCA-CGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGT 65317
| | | | | | | || || | ||||||| || ||||| || || |||| || ||
Sbjct 89753 CTGAGCGA--GGAGCGATTCAGGGGTATCGTGAGCGACGCGGTGGATATAGAGAGAGAGT 89696
Query 65318 TCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGT 65377
|| | | ||||| || || || || | ||||||||| ||| ||||| | ||
Sbjct 89695 TCGTGTGCGACGCTCTGCCGTGCGCCCTGGTGGGTATGAACGGTGATCTGATGTGCCGGT 89636
Query 65378 ACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTT---GGA 65434
|||| |||| |||| ||||| | || | |||||| || |||| ||
Sbjct 89635 ACATCGAGTTTGTGGCGGATAGGCT-TTTGGTTGCGTTGGGATGTGGGAAATTTTACGG- 89578
Query 65435 ACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCT 65494
|| ||||||| ||||||| ||||| || || | | |||||||| || ||||
Sbjct 89577 -TGCACAGAATCCGTTTGACTGGATGGAGCTGATCAGTTTGCAGGGGAAGACGAATTTCT 89519
Query 65495 TTGAGAAGCGAGTTGGGGACTA 65516
|||||||| | |||||||| ||
Sbjct 89518 TTGAGAAGAGGGTTGGGGAGTA 89497
>seq15694
Length=177509
Score = 131 bits (144), Expect = 2e-25
Identities = 284/421 (67%), Gaps = 8/421 (2%)
Strand=Plus/Minus
Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290
||| | ||||| ||||| ||| | |||||||| | || | ||| || |||||
Sbjct 55860 GAGGTGGTGGAGTTTCTGAAGAAGCCCGAGAGGTTCACTGCAGTTGGGGCTCGTATCCCT 55801
Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350
|| | ||||| | || ||||| || || ||||| | || || || ||
Sbjct 55800 AAGGGAGTTCTTCTTGTAGGACCTCCAGGAACTGGGAAGACTTTGCTGGCGAAGGCAATT 55741
Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408
|| || ||| || ||| ||||| || || | |||| || | || || |||||||
Sbjct 55740 GCTGGCGAAGCAGGTGTTCCATTTTTCTCCATT--TCTGGTTCAGAGTTCGTAGAGATGT 55683
Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468
| |||||||| |||||| ||||||| ||||| || | | ||| || ||| ||
Sbjct 55682 TCGTTGGTGTTGGTGCCTCTCGGGTTCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCAC 55623
Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526
| || |||||||| ||||||| |||||||| || || | ||| | | |||| | |
Sbjct 55622 CCTGCATTGTCTTTGTTGATGAAATTGATGCTGTTGGGAGGCAGAGAGGAACTGGAATTG 55563
Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586
| | || |||||| ||||||||||| || |||| || || | || || ||||||||
Sbjct 55562 GAGG--AGGAAATGATGAGAGAGAACAGACCCTTAACCAGCTTTTGACAGAAATGGATGG 55505
Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646
||||| | ||||| || | || |||||||| ||||| || | ||||| |||||
Sbjct 55504 TTTTGAAGGAAACACTGGTATCATTGTAATTGCGGCAACTAACCGTGCAGATATTCTTGA 55445
Query 175647 T 175647
|
Sbjct 55444 T 55444
>seq6526
Length=28452
Score = 91.5 bits (100), Expect = 2e-13
Identities = 135/191 (71%), Gaps = 3/191 (2%)
Strand=Plus/Minus
Query 65020 GAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAG 65079
|| || ||||| || ||||| |||||||| | ||| || || ||||||||
Sbjct 22098 GAAAAAAAGGCCAAGTGGGCGTTGAAATGGATCGACGGT---TCAGAATCGTTCGCCGAA 22042
Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139
| || | ||||| ||||| | ||||| |||||||||||||| |||||||| ||
Sbjct 22041 AGACTCATCGCGTTCGCGTGCTTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATA 21982
Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199
| |||| | || ||||| || | ||||| || || |||||| || || || || ||
Sbjct 21981 TTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTCGAACGAGCTGATCTCG 21922
Query 65200 CGAGATGAGGG 65210
||||| |||||
Sbjct 21921 CGAGACGAGGG 21911
>seq8535
Length=22056
Score = 89.7 bits (98), Expect = 6e-13
Identities = 149/215 (69%), Gaps = 3/215 (1%)
Strand=Plus/Minus
Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055
|| ||| | || || || || | || || ||||| || ||||| |||| ||| | |||
Sbjct 6828 GCGATCGAGACCGTCCCTTGCGTGGAAAAAAAGGCAAAGTGGGCGTTGAAGTGGATCGAC 6769
Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115
|| || |||||||| | || | || || ||||| |||||||| ||||||
Sbjct 6768 GGT---TCAGAATCGTTCGCCGAAAGGCTCATCGCATTCGCGTGCGTGGAGGGGATCTTC 6712
Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175
|||||||| |||||||| || | |||| | || ||||| || | ||||| || ||
Sbjct 6711 TTCTCCGGAAGCTTCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTC 6652
Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210
||||| || || || || || ||||| |||||
Sbjct 6651 ACTTTCTCGAACGAGCTGATCTCGCGAGACGAGGG 6617
>seq15419
Length=18895
Score = 87.8 bits (96), Expect = 2e-12
Identities = 80/101 (79%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187
|| ||||| |||| |||| | || ||| | || |||||||| ||| | |||||||||
Sbjct 8889 TTTTGCGCCATTTTTTGGCTTAAAAAGAGAGGACTCATGCCGGGCTTGACATTCTCAAAT 8830
Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228
||||||||||| ||||||||||||||||| || |||||
Sbjct 8829 GAACTTATTTCTAGAGATGAGGGTCTCCACTGTGATTTTGC 8789
>seq3070
Length=18027
Score = 86.0 bits (94), Expect = 7e-12
Identities = 198/294 (67%), Gaps = 6/294 (2%)
Strand=Plus/Minus
Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359
||||| | ||| ||| ||||| ||||||||||| | || | || | || || |||
Sbjct 8864 CTTCTGGTGGGCCCGCCCGGTACCGGAAAGACCCTGTTGGCGAGGGCGGTGGCTGGAGAA 8805
Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419
| || || ||| | || |||| || | ||||| || ||||||| ||||||
Sbjct 8804 GCCGGCGTGCCGTTCTTTTCATGTGCTGCATCAGAATTTGTAGAATTGTTTGTGGGTGTG 8745
Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGT 175478
|| || || ||| | || | ||||| | ||| | ||| | || || |||||
Sbjct 8744 GGGGCTTCGAGAGTTAGGGACTTGTTTGAGAAGGCCAAGTCGAAAGCG-CCTTGCATTGT 8686
Query 175479 CTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCA 175536
|| || ||||||||||| |||||||| | ||| | | || || | | | | |
Sbjct 8685 GTTTATAGATGAGATTGACGCGGTGGGGAGGCAGAGAGGGGCGGGGCTTGGAGGTGGG-- 8628
Query 175537 AATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
||||| |||||||| || || |||||||| || | || ||||||||||| |||
Sbjct 8627 AATGATGAGAGAGAGCAGACTATTAATCAGCTGTTGACAGAGATGGATGGGTTT 8574
>seq838
Length=146170
Score = 86.0 bits (94), Expect = 7e-12
Identities = 235/354 (66%), Gaps = 12/354 (3%)
Strand=Plus/Minus
Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359
||||| | ||| ||| ||||| || |||||||| | || | || | || || |||
Sbjct 103264 CTTCTGGTGGGGCCGCCTGGTACCGGGAAGACCCTGTTGGCAAGGGCGGTGGCCGGAGAA 103205
Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419
| || |||||| | || |||| || | ||||| || ||||||| ||||||
Sbjct 103204 GCCGGCGTGCCATTCTTTTCATGTGCTGCATCAGAATTTGTAGAATTGTTTGTGGGTGTG 103145
Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGT 175478
|| || || ||| | || | ||||| | || | |||| | || || |||||
Sbjct 103144 GGGGCTTCGAGAGTTAGGGACTTGTTTGAGAAGGCGAAGTCAAAAGCG-CCTTGCATTGT 103086
Query 175479 CTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCA 175536
|| || ||||||||||||||||| || | ||| | | || || | | | | |
Sbjct 103085 GTTTATAGATGAGATTGATGCGGTTGGGAGGCAGAGAGGGGCGGGGCTTGGAGGTGGG-- 103028
Query 175537 AATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT---GAC 175593
||||| |||||||| || || |||||||| || | || ||||||||||| ||| | |
Sbjct 103027 AATGATGAGAGAGAGCAGACTATTAATCAGCTGTTGACAGAGATGGATGGGTTTTCGGGC 102968
Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647
||| | || ||| ||| | || || |||||| | |||| | ||||||
Sbjct 102967 AATTCGGGTGTGATT---GTTTTGGCTGCGACTAATAGGCCGGATGTGCTTGAT 102917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596370338296480
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