Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq15031 154 2e-32 seq3997 141 1e-28 seq15694 131 2e-25 seq6526 91.5 2e-13 seq8535 89.7 6e-13 seq15419 87.8 2e-12 seq3070 86.0 7e-12 seq838 86.0 7e-12 >seq15031 Length=67428 Score = 154 bits (170), Expect = 2e-32 Identities = 289/421 (69%), Gaps = 8/421 (2%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||| ||| | |||||||| | || | ||| || ||||| Sbjct 39813 GAGGTGGTGGAGTTTCTGAAGAAGCCCGAGAGGTTCACTGCAGTTGGGGCTCGTATCCCT 39754 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 ||| | ||||| | ||| ||||| || || |||||||| || ||| || || Sbjct 39753 AAAGGAGTTCTTCTTGTTGGTCCTCCAGGAACTGGGAAGACCCTGCTGGCCAAGGCGATT 39694 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || |||||| || ||| ||||| || || | |||| || | || || ||||||| Sbjct 39693 GCTGGTGAAGCAGGTGTTCCATTTTTCTCCATT--TCTGGTTCAGAGTTCGTAGAGATGT 39636 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 |||||||||| |||||| |||| || ||||| || | | ||| || ||| || Sbjct 39635 TTGTTGGTGTTGGTGCCTCTCGGGTCCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCAC 39576 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526 | || |||||||| ||||||| |||||||| || || | |||| | | |||| | | Sbjct 39575 CCTGCATTGTCTTTGTTGATGAAATTGATGCTGTTGGGAGGCAAAGAGGAACTGGAATCG 39516 Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586 | | || |||||| || |||||||| || |||| || || | || || |||||||| Sbjct 39515 GAGG--AGGAAATGATGAAAGAGAACAGACCCTTAACCAGCTTTTGACAGAAATGGATGG 39458 Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 ||||| | ||||| | | |||||||| || ||||| || | ||||| ||||| Sbjct 39457 TTTTGAAGGAAACACTGGTGTCATTGTTATTGCAGCAACTAACCGTGCTGATATTCTTGA 39398 Query 175647 T 175647 | Sbjct 39397 T 39397 >seq3997 Length=108068 Score = 141 bits (156), Expect = 1e-28 Identities = 339/502 (68%), Gaps = 17/502 (3%) Strand=Plus/Minus Query 65022 GAAGAAGGCGAAATGGGCAATGAAATGGTTTGACA-CAAAGTCTCGCTCCTTCGCCGAGC 65080 ||||||||| || ||||| |||||||| | ||| | || ||| |||||||||| Sbjct 89988 GAAGAAGGCCAAGTGGGCCCTGAAATGGATCGACGGCTCAGAATCG----TTCGCCGAGC 89933 Query 65081 GCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTT 65140 | || | ||||| ||||| |||||||| |||||||||||||| |||||||| || | Sbjct 89932 GTCTCGTGGCGTTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATAT 89873 Query 65141 ATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCC 65200 |||| | |||||||| || | ||||| || || ||||| || || || || || | Sbjct 89872 TTTGGCTCAAGAAGCGCGGGTTAATGCCGGGACTGACTTTCTCGAACGAGCTAATCTCGC 89813 Query 65201 GAGATGAGGGTCTCCACCAGGAGTTTGCCGTG-GAGCTCTTCAAGACTTTGCGTAATAGA 65259 |||| ||||| || ||| || || | |||| ||| | | || || || | | Sbjct 89812 GAGACGAGGGCCTTCACTGCGACTTCG-CGTGCTTGCTGTACGAGTTACTGAGTCAGAAG 89754 Query 65260 CCCA-CTACCGAAACTATCCA-CGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGT 65317 | | | | | | | || || | ||||||| || ||||| || || |||| || || Sbjct 89753 CTGAGCGA--GGAGCGATTCAGGGGTATCGTGAGCGACGCGGTGGATATAGAGAGAGAGT 89696 Query 65318 TCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGT 65377 || | | ||||| || || || || | ||||||||| ||| ||||| | || Sbjct 89695 TCGTGTGCGACGCTCTGCCGTGCGCCCTGGTGGGTATGAACGGTGATCTGATGTGCCGGT 89636 Query 65378 ACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCCACCCATTT---GGA 65434 |||| |||| |||| ||||| | || | |||||| || |||| || Sbjct 89635 ACATCGAGTTTGTGGCGGATAGGCT-TTTGGTTGCGTTGGGATGTGGGAAATTTTACGG- 89578 Query 65435 ACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTTCT 65494 || ||||||| ||||||| ||||| || || | | |||||||| || |||| Sbjct 89577 -TGCACAGAATCCGTTTGACTGGATGGAGCTGATCAGTTTGCAGGGGAAGACGAATTTCT 89519 Query 65495 TTGAGAAGCGAGTTGGGGACTA 65516 |||||||| | |||||||| || Sbjct 89518 TTGAGAAGAGGGTTGGGGAGTA 89497 >seq15694 Length=177509 Score = 131 bits (144), Expect = 2e-25 Identities = 284/421 (67%), Gaps = 8/421 (2%) Strand=Plus/Minus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCC 175290 ||| | ||||| ||||| ||| | |||||||| | || | ||| || ||||| Sbjct 55860 GAGGTGGTGGAGTTTCTGAAGAAGCCCGAGAGGTTCACTGCAGTTGGGGCTCGTATCCCT 55801 Query 175291 CGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATC 175350 || | ||||| | || ||||| || || ||||| | || || || || Sbjct 55800 AAGGGAGTTCTTCTTGTAGGACCTCCAGGAACTGGGAAGACTTTGCTGGCGAAGGCAATT 55741 Query 175351 GCGGGTGAATCAAATGTCCCATTCATC--CAGTGCTCTGCCGCAAACTTTGTGGAGATGT 175408 || || ||| || ||| ||||| || || | |||| || | || || ||||||| Sbjct 55740 GCTGGCGAAGCAGGTGTTCCATTTTTCTCCATT--TCTGGTTCAGAGTTCGTAGAGATGT 55683 Query 175409 TTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAAC 175468 | |||||||| |||||| ||||||| ||||| || | | ||| || ||| || Sbjct 55682 TCGTTGGTGTTGGTGCCTCTCGGGTTCGTGATCTTTTCAAGAAGGCCAAGGAGAATGCAC 55623 Query 175469 CATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGG 175526 | || |||||||| ||||||| |||||||| || || | ||| | | |||| | | Sbjct 55622 CCTGCATTGTCTTTGTTGATGAAATTGATGCTGTTGGGAGGCAGAGAGGAACTGGAATTG 55563 Query 175527 TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGG 175586 | | || |||||| ||||||||||| || |||| || || | || || |||||||| Sbjct 55562 GAGG--AGGAAATGATGAGAGAGAACAGACCCTTAACCAGCTTTTGACAGAAATGGATGG 55505 Query 175587 CTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 ||||| | ||||| || | || |||||||| ||||| || | ||||| ||||| Sbjct 55504 TTTTGAAGGAAACACTGGTATCATTGTAATTGCGGCAACTAACCGTGCAGATATTCTTGA 55445 Query 175647 T 175647 | Sbjct 55444 T 55444 >seq6526 Length=28452 Score = 91.5 bits (100), Expect = 2e-13 Identities = 135/191 (71%), Gaps = 3/191 (2%) Strand=Plus/Minus Query 65020 GAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGACACAAAGTCTCGCTCCTTCGCCGAG 65079 || || ||||| || ||||| |||||||| | ||| || || |||||||| Sbjct 22098 GAAAAAAAGGCCAAGTGGGCGTTGAAATGGATCGACGGT---TCAGAATCGTTCGCCGAA 22042 Query 65080 CGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATT 65139 | || | ||||| ||||| | ||||| |||||||||||||| |||||||| || Sbjct 22041 AGACTCATCGCGTTCGCGTGCTTCGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATA 21982 Query 65140 TATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCC 65199 | |||| | || ||||| || | ||||| || || |||||| || || || || || Sbjct 21981 TTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTCGAACGAGCTGATCTCG 21922 Query 65200 CGAGATGAGGG 65210 ||||| ||||| Sbjct 21921 CGAGACGAGGG 21911 >seq8535 Length=22056 Score = 89.7 bits (98), Expect = 6e-13 Identities = 149/215 (69%), Gaps = 3/215 (1%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 || ||| | || || || || | || || ||||| || ||||| |||| ||| | ||| Sbjct 6828 GCGATCGAGACCGTCCCTTGCGTGGAAAAAAAGGCAAAGTGGGCGTTGAAGTGGATCGAC 6769 Query 65056 ACAAAGTCTCGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTC 65115 || || |||||||| | || | || || ||||| |||||||| |||||| Sbjct 6768 GGT---TCAGAATCGTTCGCCGAAAGGCTCATCGCATTCGCGTGCGTGGAGGGGATCTTC 6712 Query 65116 TTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTA 65175 |||||||| |||||||| || | |||| | || ||||| || | ||||| || || Sbjct 6711 TTCTCCGGAAGCTTCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTC 6652 Query 65176 TGCTTCTCAAATGAACTTATTTCCCGAGATGAGGG 65210 ||||| || || || || || ||||| ||||| Sbjct 6651 ACTTTCTCGAACGAGCTGATCTCGCGAGACGAGGG 6617 >seq15419 Length=18895 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/101 (79%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || ||||| |||| |||| | || ||| | || |||||||| ||| | ||||||||| Sbjct 8889 TTTTGCGCCATTTTTTGGCTTAAAAAGAGAGGACTCATGCCGGGCTTGACATTCTCAAAT 8830 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 ||||||||||| ||||||||||||||||| || ||||| Sbjct 8829 GAACTTATTTCTAGAGATGAGGGTCTCCACTGTGATTTTGC 8789 >seq3070 Length=18027 Score = 86.0 bits (94), Expect = 7e-12 Identities = 198/294 (67%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359 ||||| | ||| ||| ||||| ||||||||||| | || | || | || || ||| Sbjct 8864 CTTCTGGTGGGCCCGCCCGGTACCGGAAAGACCCTGTTGGCGAGGGCGGTGGCTGGAGAA 8805 Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419 | || || ||| | || |||| || | ||||| || ||||||| |||||| Sbjct 8804 GCCGGCGTGCCGTTCTTTTCATGTGCTGCATCAGAATTTGTAGAATTGTTTGTGGGTGTG 8745 Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGT 175478 || || || ||| | || | ||||| | ||| | ||| | || || ||||| Sbjct 8744 GGGGCTTCGAGAGTTAGGGACTTGTTTGAGAAGGCCAAGTCGAAAGCG-CCTTGCATTGT 8686 Query 175479 CTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCA 175536 || || ||||||||||| |||||||| | ||| | | || || | | | | | Sbjct 8685 GTTTATAGATGAGATTGACGCGGTGGGGAGGCAGAGAGGGGCGGGGCTTGGAGGTGGG-- 8628 Query 175537 AATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||||| |||||||| || || |||||||| || | || ||||||||||| ||| Sbjct 8627 AATGATGAGAGAGAGCAGACTATTAATCAGCTGTTGACAGAGATGGATGGGTTT 8574 >seq838 Length=146170 Score = 86.0 bits (94), Expect = 7e-12 Identities = 235/354 (66%), Gaps = 12/354 (3%) Strand=Plus/Minus Query 175300 CTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAA 175359 ||||| | ||| ||| ||||| || |||||||| | || | || | || || ||| Sbjct 103264 CTTCTGGTGGGGCCGCCTGGTACCGGGAAGACCCTGTTGGCAAGGGCGGTGGCCGGAGAA 103205 Query 175360 TCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTG 175419 | || |||||| | || |||| || | ||||| || ||||||| |||||| Sbjct 103204 GCCGGCGTGCCATTCTTTTCATGTGCTGCATCAGAATTTGTAGAATTGTTTGTGGGTGTG 103145 Query 175420 GGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGT 175478 || || || ||| | || | ||||| | || | |||| | || || ||||| Sbjct 103144 GGGGCTTCGAGAGTTAGGGACTTGTTTGAGAAGGCGAAGTCAAAAGCG-CCTTGCATTGT 103086 Query 175479 CTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCA 175536 || || ||||||||||||||||| || | ||| | | || || | | | | | Sbjct 103085 GTTTATAGATGAGATTGATGCGGTTGGGAGGCAGAGAGGGGCGGGGCTTGGAGGTGGG-- 103028 Query 175537 AATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT---GAC 175593 ||||| |||||||| || || |||||||| || | || ||||||||||| ||| | | Sbjct 103027 AATGATGAGAGAGAGCAGACTATTAATCAGCTGTTGACAGAGATGGATGGGTTTTCGGGC 102968 Query 175594 AATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 ||| | || ||| ||| | || || |||||| | |||| | |||||| Sbjct 102967 AATTCGGGTGTGATT---GTTTTGGCTGCGACTAATAGGCCGGATGTGCTTGAT 102917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596370338296480