Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq16707 547 8e-151 seq647 259 6e-64 seq6733 134 2e-26 seq574 123 3e-23 seq24083 118 1e-21 seq20 118 1e-21 seq10199 84.2 3e-11 >seq16707 Length=103149 Score = 547 bits (606), Expect = 8e-151 Identities = 711/983 (72%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | || Sbjct 22086 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 22145 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | ||| | |||||| || ||| Sbjct 22146 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 22205 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || |||||||| || || || ||||| || | |||||| | || ||| ||| Sbjct 22206 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 22265 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130 |||| | ||| || || | | ||| | ||||||||| | | | | ||||||||| Sbjct 22266 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 22325 Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190 ||||| ||||||||||||| ||||| || |||||||| || ||||||||||| || Sbjct 22326 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTT 22385 Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250 ||||| ||||||||||| | ||||| | || ||| || | |||||| || || ||| Sbjct 22386 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 22445 Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310 || | | ||| || || || ||||| |||||||||||||| || || || ||||| | | Sbjct 22446 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 22505 Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370 || ||||| ||| ||| || || ||||||||||| |||||||||||||| |||||||| Sbjct 22506 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 22565 Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430 | ||| ||||| || |||||||| || |||| |||||| ||||||||||| || ||| Sbjct 22566 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 22625 Query 8431 CCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACA 8490 |||| || || | ||||| || || |||||| | || ||||| |||||| ||| Sbjct 22626 CCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 22685 Query 8491 CAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCA 8550 ||||| || | |||||| | ||| | | ||||||| | |||||| ||| | Sbjct 22686 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 22745 Query 8551 GAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCAC 8610 | | |||| | |||||| | | || | || ||| ||||| || || || ||||| Sbjct 22746 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 22805 Query 8611 TCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGAT 8670 ||||| | | || |||||||| || || || ||||| || || ||||| |||| Sbjct 22806 TCATCAACAGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTA 22865 Query 8671 GGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCA 8730 |||| | ||||||||||| || |||||||| || | || ||||| | |||||| ||| Sbjct 22866 GGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 22925 Query 8731 CGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCA 8790 |||||||| || ||||| || || || ||||| || || || | ||||| || || Sbjct 22926 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 22985 Query 8791 GCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTT 8850 || | ||| ||| ||| ||||| | ||| || ||||| |||| ||||| | ||| | Sbjct 22986 GCGGTTAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCG 23045 Query 8851 GTACTTGTAACCCACTCGCAAAA 8873 || || || | ||| | ||| || Sbjct 23046 GTGCTAGTTATCCAGTTGCAGAA 23068 >seq647 Length=36880 Score = 259 bits (286), Expect = 6e-64 Identities = 396/558 (71%), Gaps = 5/558 (1%) Strand=Plus/Plus Query 8226 AGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGC 8285 ||| || | ||| || || || ||||| | | ||| || || |||||||| |||||||| Sbjct 13608 AGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGC 13667 Query 8286 ACTGAAGAGTGATCCACCGAACATAC-CTGCTACCCCTGCCATATGGAAAGGATGCATAA 8344 |||||| | || || ||||| | | | |||| ||| ||| || || | ||||||| Sbjct 13668 ACTGAATGGGGAGCCGCCGAATACCCACAGCTATACCTAACATGTGAAATGTGTGCATAA 13727 Query 8345 GAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAG 8404 | ||||| ||||| || |||| ||||| ||||||||| || |||||||| || |||| || Sbjct 13728 GGATGTTGTGCTCAGCATGGAGTACGATCATGAAGTTGAAAGTACCAGAGATTCCTACAG 13787 Query 8405 GCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAG 8464 |||| |||| ||| || || | ||||| ||| || | ||||| || || ||||| Sbjct 13788 GCATACCATTAGAAAAACTTCCTTAACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAG 13847 Query 8465 CAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATA 8524 | | || |||| |||||| ||| ||| | ||| |||||| || ||| | | || Sbjct 13848 CTGCAACAAGAGCTGAATATGCAACAACAATCAAAGGTTGCATACCCAAACGGAA-GCTA 13906 Query 8525 ACT-CCCACTGTCTACCCATGTAAGCAGAA-ATTCCAATAAGGAAGTGGAAGATAACCAA 8582 | | |||||| | |||||||||| || | | |||| | |||||| | | || | Sbjct 13907 AGTTCCCACTCACGACCCATGTAA-CACACTACACCAAGCAAGAAGTGTAGAACAATTAG 13965 Query 8583 CTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATA 8642 || ||| ||||| || || || ||||| ||||| | | || |||||||| || || || Sbjct 13966 CTCATAAGGACCGCCATTGTATAACCATTCATCAATGGATGCCGCTTCCCAGATCGGGTA 14025 Query 8643 GAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCC 8702 ||||| || || ||||| | |||| ||| | |||| ||||| || |||||||| Sbjct 14026 AAAGTGCAAACCTATAGCTGTAGAAGTAGGATTAATGACACCTGAGATAATATTGTTTCC 14085 Query 8703 ATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGC 8762 || | | || || | |||||| ||||||||||| || ||| || || |||||||| Sbjct 14086 GTAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAGCATCTACTGGAGGAGCAGC 14145 Query 8763 AATAAATGCCACGATAAA 8780 ||| || || | ||||| Sbjct 14146 AATGAAGGCGAAAATAAA 14163 >seq6733 Length=89479 Score = 134 bits (148), Expect = 2e-26 Identities = 211/301 (70%), Gaps = 1/301 (0%) Strand=Plus/Minus Query 8540 CCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGT 8599 |||||||| || | |||| | |||||| | | || | || ||| ||||| |||| Sbjct 9066 CCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTATCTCATAAGGACCACCGT 9007 Query 8600 TATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAG 8659 | || |||| ||||| | | || |||||| | |||| || ||||| || || |||| Sbjct 9006 TGGACCACCATTCATCAACGGATGCCGCTTCCAGATTGGG-TAAAAGTGCAAACCTATAG 8948 Query 8660 CGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTG 8719 | |||| |||| | ||||| ||||| || ||||||||||| | | || || | Sbjct 8947 CTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAG 8888 Query 8720 CAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAA 8779 |||||| |||||||| || || ||||| || || ||||||||||| || || | |||| Sbjct 8887 AAACAGGCTCACGAATCCCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAA 8828 Query 8780 AGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAA 8839 | || || || | ||| ||| ||| ||||| | ||| ||||||| || | |||| Sbjct 8827 ATACAGAAGTTGCGGTTAATAAGGTAGGGATCATCAAAACACCAAACCGTCCAATGTAAA 8768 Query 8840 G 8840 | Sbjct 8767 G 8767 >seq574 Length=41708 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | || Sbjct 2489 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2430 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | || | | |||||| || ||| Sbjct 2429 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGAT 2370 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || ||||| || ||||| |||| ||||| | || ||| ||| Sbjct 2369 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 2310 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG 8108 || | || ||| || || | | ||| |||||||| || Sbjct 2309 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATG 2272 >seq24083 Length=1989 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | || Sbjct 960 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 901 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | || | | |||||| || || Sbjct 900 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACATAT 841 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || ||||| || ||||| |||| ||||| | || ||| ||| Sbjct 840 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 781 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG 8108 || | || ||| || || | | ||| |||||||| || Sbjct 780 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATG 743 >seq20 Length=236725 Score = 118 bits (130), Expect = 1e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | || Sbjct 78631 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 78572 Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010 || | ||| | | ||| |||| ||| ||| | || | | |||||| || || Sbjct 78571 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAAAT 78512 Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070 ||||| || || || || || ||||| || ||||| |||| ||||| | || ||| ||| Sbjct 78511 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 78452 Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG 8108 || | || ||| || || | | ||| |||||||| || Sbjct 78451 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATG 78414 >seq10199 Length=21994 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/183 (70%), Gaps = 12/183 (7%) Strand=Plus/Minus Query 8026 CCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACT 8085 || || ||||| || ||||| |||| ||||| | || ||| ||||| | || ||| || Sbjct 14408 CCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACA 14349 Query 8086 GGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGCATACTGGAA 8144 || | | || |||||||| || | | | |||||| |||| | ||||| ||||| Sbjct 14348 GGCCAAGCAGTTAGGAAGAAATGTAAAGAAAGAGAGTTGTTGAAACTA-GCATATTGGAA 14290 Query 8145 GATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACC 8204 ||| ||| | ||||||||||| || |||||||| || ||||| |||||||| Sbjct 14289 GATCAAT----------AGCCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACC 14240 Query 8205 AAA 8207 || Sbjct 14239 GAA 14237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615656694260120