Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq16707 547 8e-151
seq647 259 6e-64
seq6733 134 2e-26
seq574 123 3e-23
seq24083 118 1e-21
seq20 118 1e-21
seq10199 84.2 3e-11
>seq16707
Length=103149
Score = 547 bits (606), Expect = 8e-151
Identities = 711/983 (72%), Gaps = 0/983 (0%)
Strand=Plus/Plus
Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950
|||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||
Sbjct 22086 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 22145
Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010
|| | ||| | | ||| |||| ||| ||| | ||| | |||||| || |||
Sbjct 22146 GCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACCTTGGCTATCAACTACAGAT 22205
Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070
||||| || || |||||||| || || || ||||| || | |||||| | || ||| |||
Sbjct 22206 TGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAAC 22265
Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTTAAAC 8130
|||| | ||| || || | | ||| | ||||||||| | | | | |||||||||
Sbjct 22266 CAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAAA 22325
Query 8131 GATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTC 8190
||||| ||||||||||||| ||||| || |||||||| || ||||||||||| ||
Sbjct 22326 CTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGTT 22385
Query 8191 TCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGTTGTCTCTCTG 8250
||||| ||||||||||| | ||||| | || ||| || | |||||| || || |||
Sbjct 22386 TCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCTG 22445
Query 8251 ATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAACATA 8310
|| | | ||| || || || ||||| |||||||||||||| || || || ||||| | |
Sbjct 22446 ATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATACA 22505
Query 8311 CCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACG 8370
|| ||||| ||| ||| || || ||||||||||| |||||||||||||| ||||||||
Sbjct 22506 CCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATACA 22565
Query 8371 AACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGA 8430
| ||| ||||| || |||||||| || |||| |||||| ||||||||||| || |||
Sbjct 22566 ATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTGA 22625
Query 8431 CCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACA 8490
|||| || || | ||||| || || |||||| | || ||||| |||||| |||
Sbjct 22626 CCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACA 22685
Query 8491 CAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCA 8550
||||| || | |||||| | ||| | | ||||||| | |||||| ||| |
Sbjct 22686 GCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACAA 22745
Query 8551 GAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCAC 8610
| | |||| | |||||| | | || | || ||| ||||| || || || |||||
Sbjct 22746 GCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCAT 22805
Query 8611 TCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGAT 8670
||||| | | || |||||||| || || || ||||| || || ||||| ||||
Sbjct 22806 TCATCAACAGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGTA 22865
Query 8671 GGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCA 8730
|||| | ||||||||||| || |||||||| || | || ||||| | |||||| |||
Sbjct 22866 GGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCTCA 22925
Query 8731 CGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCA 8790
|||||||| || ||||| || || || ||||| || || || | ||||| || ||
Sbjct 22926 CGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACAGAAGTT 22985
Query 8791 GCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTT 8850
|| | ||| ||| ||| ||||| | ||| || ||||| |||| ||||| | ||| |
Sbjct 22986 GCGGTTAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCG 23045
Query 8851 GTACTTGTAACCCACTCGCAAAA 8873
|| || || | ||| | ||| ||
Sbjct 23046 GTGCTAGTTATCCAGTTGCAGAA 23068
>seq647
Length=36880
Score = 259 bits (286), Expect = 6e-64
Identities = 396/558 (71%), Gaps = 5/558 (1%)
Strand=Plus/Plus
Query 8226 AGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGC 8285
||| || | ||| || || || ||||| | | ||| || || |||||||| ||||||||
Sbjct 13608 AGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGC 13667
Query 8286 ACTGAAGAGTGATCCACCGAACATAC-CTGCTACCCCTGCCATATGGAAAGGATGCATAA 8344
|||||| | || || ||||| | | | |||| ||| ||| || || | |||||||
Sbjct 13668 ACTGAATGGGGAGCCGCCGAATACCCACAGCTATACCTAACATGTGAAATGTGTGCATAA 13727
Query 8345 GAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAG 8404
| ||||| ||||| || |||| ||||| ||||||||| || |||||||| || |||| ||
Sbjct 13728 GGATGTTGTGCTCAGCATGGAGTACGATCATGAAGTTGAAAGTACCAGAGATTCCTACAG 13787
Query 8405 GCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAG 8464
|||| |||| ||| || || | ||||| ||| || | ||||| || || |||||
Sbjct 13788 GCATACCATTAGAAAAACTTCCTTAACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAG 13847
Query 8465 CAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATA 8524
| | || |||| |||||| ||| ||| | ||| |||||| || ||| | | ||
Sbjct 13848 CTGCAACAAGAGCTGAATATGCAACAACAATCAAAGGTTGCATACCCAAACGGAA-GCTA 13906
Query 8525 ACT-CCCACTGTCTACCCATGTAAGCAGAA-ATTCCAATAAGGAAGTGGAAGATAACCAA 8582
| | |||||| | |||||||||| || | | |||| | |||||| | | || |
Sbjct 13907 AGTTCCCACTCACGACCCATGTAA-CACACTACACCAAGCAAGAAGTGTAGAACAATTAG 13965
Query 8583 CTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATA 8642
|| ||| ||||| || || || ||||| ||||| | | || |||||||| || || ||
Sbjct 13966 CTCATAAGGACCGCCATTGTATAACCATTCATCAATGGATGCCGCTTCCCAGATCGGGTA 14025
Query 8643 GAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCC 8702
||||| || || ||||| | |||| ||| | |||| ||||| || ||||||||
Sbjct 14026 AAAGTGCAAACCTATAGCTGTAGAAGTAGGATTAATGACACCTGAGATAATATTGTTTCC 14085
Query 8703 ATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGC 8762
|| | | || || | |||||| ||||||||||| || ||| || || ||||||||
Sbjct 14086 GTAAAGTAGAGATCCAGAAACAGGCTCACGAATACCATCAGCATCTACTGGAGGAGCAGC 14145
Query 8763 AATAAATGCCACGATAAA 8780
||| || || | |||||
Sbjct 14146 AATGAAGGCGAAAATAAA 14163
>seq6733
Length=89479
Score = 134 bits (148), Expect = 2e-26
Identities = 211/301 (70%), Gaps = 1/301 (0%)
Strand=Plus/Minus
Query 8540 CCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGT 8599
|||||||| || | |||| | |||||| | | || | || ||| ||||| ||||
Sbjct 9066 CCATGTAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTATCTCATAAGGACCACCGT 9007
Query 8600 TATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAG 8659
| || |||| ||||| | | || |||||| | |||| || ||||| || || ||||
Sbjct 9006 TGGACCACCATTCATCAACGGATGCCGCTTCCAGATTGGG-TAAAAGTGCAAACCTATAG 8948
Query 8660 CGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTG 8719
| |||| |||| | ||||| ||||| || ||||||||||| | | || || |
Sbjct 8947 CTGCAGAAGTAGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAG 8888
Query 8720 CAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAA 8779
|||||| |||||||| || || ||||| || || ||||||||||| || || | ||||
Sbjct 8887 AAACAGGCTCACGAATCCCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAA 8828
Query 8780 AGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAA 8839
| || || || | ||| ||| ||| ||||| | ||| ||||||| || | ||||
Sbjct 8827 ATACAGAAGTTGCGGTTAATAAGGTAGGGATCATCAAAACACCAAACCGTCCAATGTAAA 8768
Query 8840 G 8840
|
Sbjct 8767 G 8767
>seq574
Length=41708
Score = 123 bits (136), Expect = 3e-23
Identities = 158/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950
|||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||
Sbjct 2489 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2430
Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010
|| | ||| | | ||| |||| ||| ||| | || | | |||||| || |||
Sbjct 2429 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGAT 2370
Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070
||||| || || || || || ||||| || ||||| |||| ||||| | || ||| |||
Sbjct 2369 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 2310
Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG 8108
|| | || ||| || || | | ||| |||||||| ||
Sbjct 2309 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATG 2272
>seq24083
Length=1989
Score = 118 bits (130), Expect = 1e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950
|||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||
Sbjct 960 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 901
Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010
|| | ||| | | ||| |||| ||| ||| | || | | |||||| || ||
Sbjct 900 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACATAT 841
Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070
||||| || || || || || ||||| || ||||| |||| ||||| | || ||| |||
Sbjct 840 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 781
Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG 8108
|| | || ||| || || | | ||| |||||||| ||
Sbjct 780 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATG 743
>seq20
Length=236725
Score = 118 bits (130), Expect = 1e-21
Identities = 157/218 (72%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950
|||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||
Sbjct 78631 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 78572
Query 7951 GCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTGAT 8010
|| | ||| | | ||| |||| ||| ||| | || | | |||||| || ||
Sbjct 78571 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAAAT 78512
Query 8011 TGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAAC 8070
||||| || || || || || ||||| || ||||| |||| ||||| | || ||| |||
Sbjct 78511 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 78452
Query 8071 CAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTG 8108
|| | || ||| || || | | ||| |||||||| ||
Sbjct 78451 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATG 78414
>seq10199
Length=21994
Score = 84.2 bits (92), Expect = 3e-11
Identities = 129/183 (70%), Gaps = 12/183 (7%)
Strand=Plus/Minus
Query 8026 CCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACACATACAACT 8085
|| || ||||| || ||||| |||| ||||| | || ||| ||||| | || ||| ||
Sbjct 14408 CCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTACA 14349
Query 8086 GGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGCATACTGGAA 8144
|| | | || |||||||| || | | | |||||| |||| | ||||| |||||
Sbjct 14348 GGCCAAGCAGTTAGGAAGAAATGTAAAGAAAGAGAGTTGTTGAAACTA-GCATATTGGAA 14290
Query 8145 GATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACC 8204
||| ||| | ||||||||||| || |||||||| || ||||| ||||||||
Sbjct 14289 GATCAAT----------AGCCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACC 14240
Query 8205 AAA 8207
||
Sbjct 14239 GAA 14237
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 615656694260120
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