Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq16707 488 2e-133 seq647 215 2e-51 seq574 150 5e-32 seq24083 147 6e-31 seq20 147 6e-31 seq10199 141 3e-29 seq6008 125 2e-24 seq6733 113 1e-20 seq7956 87.8 5e-13 seq4124 82.4 2e-11 >seq16707 Length=103149 Score = 488 bits (540), Expect = 2e-133 Identities = 684/957 (71%), Gaps = 2/957 (0%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | ||||||||||| || | ||||| || | ||| || |||| || Sbjct 23041 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTAACCGCAAC 22983 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||||||||| | | || || || || || || ||||| || || || Sbjct 22982 TTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 22923 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 || || |||| || | | || || ||||| || || || || ||| | |||| | Sbjct 22922 GCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 22863 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || || || | ||||| |||||||| |||||||| || | |||||||||| Sbjct 22862 TTCTGCAGCTATAGGTTTGCACTTTTACCCAATCTGGGAAGCGGCATCTGTTGATGAATG 22803 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 | | ||||| |||||||| | | || | || | |||||| | |||| || | Sbjct 22802 GTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 22743 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||| ||||| || ||||||||||| || | || || || ||| | || ||||| ||| Sbjct 22742 TTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 22683 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || |||||||| || ||||| |||||||| ||| | |||| || |||| || Sbjct 22682 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCA 22623 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || ||| ||||||| |||||| || || ||||| || || ||||||| ||| | || Sbjct 22622 AGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCTGGTACTTTCAACTTTATGATTGT 22563 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGT 41799 |||||||| ||||| || || ||||||||||| ||||||||| | ||||| || || || Sbjct 22562 ATTCCAGGCAGAGCATAACATCCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGT 22503 Query 41800 ATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACTCATTCG 41859 ||| || || | ||| ||||||||| ||| | |||| || || | || | Sbjct 22502 ATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 22443 Query 41860 TGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGAAGAGAC 41919 || || |||||| | | || || | ||||||| ||||||||||||||||| || Sbjct 22442 GGAAACCACTGAAAACGAATCTGCTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAAAC 22383 Query 41920 TTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGCTAGCTT 41979 ||| |||||||| || ||||| || |||||||| || | ||||||||||||||||| || Sbjct 22382 TTATAATATTGTGGCCGCTCATGGTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTT 22323 Query 41980 TAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTT 42039 ||| || || ||| | | || ||||| | ||||| |||||||| ||||| |||||||| Sbjct 22322 TAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTT 22263 Query 42040 TGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATC 42099 |||| | || | ||| ||||||||||| | || || ||||| || |||||||| Sbjct 22262 CACTGCTTTAGGTATTAGTACTATGGCTTTCAATCTAAACGGATTCAATTTCAACCAATC 22203 Query 42100 TCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAA 42159 | | | | | | || | || || || || |||||||| || | |||||||| || Sbjct 22202 TGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTGGGCTGATATCATCAACCGTGCTAA 22143 Query 42160 CCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 ||||| | || || |||||||| || || || || |||||||| || ||||| || Sbjct 22142 TCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 22086 >seq647 Length=36880 Score = 215 bits (238), Expect = 2e-51 Identities = 347/497 (70%), Gaps = 4/497 (1%) Strand=Plus/Minus Query 41316 CTACAACTTGT---TTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAA 41372 || |||||| | |||||| ||||||| ||| || || || || || ||||| | Sbjct 14177 CTGCAACTTCTGTATTTATTTTCGCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTA 14118 Query 41373 TCCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCG 41432 | || || || || |||| || || | || || ||||| || || ||||| | | | Sbjct 14117 TTCGTGAGCCTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGTCATTA 14058 Query 41433 TTCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTG 41492 ||| | || || || || | ||||| ||||| || |||||||| || | ||| Sbjct 14057 ATCCTACTTCTACAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTG 13998 Query 41493 ATGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCG 41552 |||||||| | ||||| |||||||| | | || | || | |||||| | |||| | Sbjct 13997 ATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTG 13938 Query 41553 TCTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGA 41612 | | ||||||||| || |||||||||||||||| || | || ||| || | || Sbjct 13937 TAGTGTGTTACATGGGTCGTGAGTGGGAACTTAGCTTCCGTTTGGGTATGCAACCTTTGA 13878 Query 41613 TCTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGT 41672 | ||||||| || || |||| ||| || ||||| |||||||| ||| | | || || Sbjct 13877 TTGTTGTTGCATATTCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAA 13818 Query 41673 TTGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACA 41732 |||| | || ||||||| ||| |||||| | || || || || || ||||||| || Sbjct 13817 TTGGTTAAGGAAGTTTTTCTAATGGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCA 13758 Query 41733 TGCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGG 41792 || | || |||| ||||||||||| || |||||||| | ||||||||| | ||| | | Sbjct 13757 TGATCGTACTCCATGCTGAGCACAACATCCTTATGCACACATTTCACATGTTAGGTATAG 13698 Query 41793 CCG-GCGTATTTGGTGG 41808 | | | ||||| || || Sbjct 13697 CTGTGGGTATTCGGCGG 13681 >seq574 Length=41708 Score = 150 bits (166), Expect = 5e-32 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 41999 CATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCT 42058 |||||||| || ||||| |||||||| |||||||| ||||| |||| | || | Sbjct 2272 CATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGC 2331 Query 42059 ACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGA 42118 || |||||||||||| | ||||||||||| || ||||||||| | | | | | | || Sbjct 2332 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGC 2391 Query 42119 CAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATG 42178 | || || || ||||||||||| || |||||||||| || ||||| | || || ||| Sbjct 2392 CGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTTATG 2451 Query 42179 CATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 ||||| || || || || |||||||| || ||||| || Sbjct 2452 CATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 2489 >seq24083 Length=1989 Score = 147 bits (162), Expect = 6e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 41978 TTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGG 42037 || || || || ||| | | |||||||| || ||||| |||||||| |||||||| ||| Sbjct 722 TTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 781 Query 42038 TTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAA 42097 || |||| | || | || |||||||||||| | ||||||||||| || |||||| Sbjct 782 TTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 841 Query 42098 TCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCC 42157 | | | | | | | | || | || || || ||||||||||| || |||||||||| Sbjct 842 TATGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCT 901 Query 42158 AACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 || ||||| | || || |||||||| || || || || |||||||| || ||||| || Sbjct 902 AATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 960 >seq20 Length=236725 Score = 147 bits (162), Expect = 6e-31 Identities = 176/239 (74%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 41978 TTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGG 42037 || || || || ||| | | |||||||| || ||||| |||||||| |||||||| ||| Sbjct 78393 TTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 78452 Query 42038 TTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAA 42097 || |||| | || | || |||||||||||| | ||||||||||| || |||||| Sbjct 78453 TTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 78512 Query 42098 TCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCC 42157 | | | | | | | | || | || || || ||||||||||| || |||||||||| Sbjct 78513 TTTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCT 78572 Query 42158 AACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 || ||||| | || || |||||||| || || || || |||||||| || ||||| || Sbjct 78573 AATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 78631 >seq10199 Length=21994 Score = 141 bits (156), Expect = 3e-29 Identities = 194/275 (71%), Gaps = 22/275 (8%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 || |||| || |||||||||||||| ||||| ||||| || |||||||| ||||||| Sbjct 14228 GGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGCTATTG- 14286 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 ||||||||||||||||| || || || || | | | | |||||||| || Sbjct 14287 ---------ATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTCTTCCTA 14337 Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070 |||| |||||||| |||||||| ||||| |||| | || | || ||||||||| Sbjct 14338 ACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 14397 Query 42071 AACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAAC 42130 ||| | |||||| |||||| | | | | | | || | || || ||| Sbjct 14398 AACCTAAATGGT------------CAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAAC 14445 Query 42131 ACCTGGGCTGACATTCTTAACCGTGCCAACCTTGG 42165 ||||||||||| || |||||||||| || ||||| Sbjct 14446 ACCTGGGCTGATATCATTAACCGTGCTAATCTTGG 14480 >seq6008 Length=80333 Score = 125 bits (138), Expect = 2e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 42008 CTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCT 42067 || ||||| |||||||| |||||||| ||||| |||| | || | || |||||| Sbjct 50675 CTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCT 50616 Query 42068 TTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGACAGGTGATC 42127 |||||| | ||||||||||| || ||||||| | | | | | | | || | || || Sbjct 50615 TTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGGTAGTCAAGGCCGTGTAATT 50556 Query 42128 AACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAGCGG 42187 || ||||||||||| || |||||||||| || ||||| | | || ||||||| || Sbjct 50555 AATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGTAAGTTGTGCATGAACGT 50496 Query 42188 AACGCACACAACTTCCCGCTTGACCTTGC 42216 || || || |||||||| || ||||| || Sbjct 50495 AATGCTCATAACTTCCCTCTAGACCTAGC 50467 >seq6733 Length=89479 Score = 113 bits (124), Expect = 1e-20 Identities = 227/333 (68%), Gaps = 3/333 (1%) Strand=Plus/Plus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313 ||| | |||| |||||| | ||| |||| || || | ||||| || | ||| || | Sbjct 8755 ACTGAAAACCATCTTTACATTGGACGGTTTGGTGTTTTGATGATCCC-TACCTTATTAAC 8813 Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373 ||| || || |||||||||||||| ||| || || || || || || ||||| || Sbjct 8814 CGCAACTTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGGAT 8873 Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433 || || || || |||| || || | ||||| ||||| || || ||||| ||| | | Sbjct 8874 TCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCAGGTGCCATTAT 8933 Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493 ||| | | || || || | ||||| |||||||| | |||||| || | |||| Sbjct 8934 TCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCT-GGAAGCGGCATCCGTTGA 8992 Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553 ||||||| || |||||| ||||| | | | | || | |||||| | |||| || Sbjct 8993 TGAATGGTGGTCCAACGGTGGTCCTTATGAGATAATTGTTCTACACTTCTTACTTGGTGT 9052 Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAG 41586 | |||||||| || ||||| ||||||| Sbjct 9053 AGCTTGTTACATGGATCGTGAGTGAAAACTTAG 9085 >seq7956 Length=50133 Score = 87.8 bits (96), Expect = 5e-13 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 41999 CATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCT 42058 |||||||| || |||| |||||| | |||||||| || || |||| | | | Sbjct 30811 CATTTCTTCCTAACTGCTTGGCCTTTAGTAGGTATCTGATTCACTGCTTTAGATATCAAC 30752 Query 42059 ACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGA 42118 || |||||||||||| | ||||||||||| || ||||||||| | | | | | | || Sbjct 30751 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGG- 30693 Query 42119 CAG-GTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGT 42174 ||| || || || | ||||||||| || |||||||| || ||||| ||| ||| Sbjct 30692 CAGTGTAATTAATATCTGGGCTGATATCATTAACCGTATTAATCTTGGTCTTGTGGT 30636 >seq4124 Length=71480 Score = 82.4 bits (90), Expect = 2e-11 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 41573 GAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCT 41632 |||||||||||||| | || | || ||| | | ||||| |||||| || || ||| Sbjct 19251 GAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACTTTGGATTGCTGTTGCATATTCAGCT 19192 Query 41633 CCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCT 41692 ||||| || ||||| | |||||| ||| | | || || |||| || || ||||||| Sbjct 19191 CCTGTTGCAGCTGCTATTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCT 19132 Query 41693 GATGCTATGCCCT 41705 |||| |||||||| Sbjct 19131 GATGGTATGCCCT 19119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146168004434584