Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq16707 535 1e-147 seq647 269 8e-68 seq24083 150 5e-32 seq20 150 5e-32 seq574 149 2e-31 seq6733 141 3e-29 seq10199 125 2e-24 seq6008 120 9e-23 seq7956 84.2 6e-12 >seq16707 Length=103149 Score = 535 bits (592), Expect = 1e-147 Identities = 718/994 (72%), Gaps = 4/994 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | ||| || | ||||||||||| | || ||||| Sbjct 23077 TGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTC 23018 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | || || | ||| |||||| |||| |||| Sbjct 23017 GGTGTTTTGATGAT-CCCTACCTTATTAACCGCAACTTC-TGTATTTATTATCGCCTTCA 22960 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 | ||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||| | || | Sbjct 22959 TCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTT 22900 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 | || ||||| || |||||||||||| | | |||| | || || || | || | Sbjct 22899 ACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACT 22840 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | ||||||||||| | |||| |||||| | ||||||||||| |||||| Sbjct 22839 TTTACCCAATCTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATG 22780 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 |||| | || | |||||| | | ||| | | ||| |||| || || ||||||| Sbjct 22779 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 22720 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 | | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 22719 TGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 22660 Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757 | || ||||| || ||| | | || || |||| ||||| ||| || ||||| |||| Sbjct 22659 CTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGC 22600 Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817 || | || || || ||||| |||||||| ||| | || |||||||| || |||||||| | Sbjct 22599 CTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCC 22540 Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877 |||||||||| || || ||| | ||||| || || ||||| || || || | ||| | Sbjct 22539 TTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTG 22480 Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937 ||||||||||| | || |||||| | | | | ||||| |||||||||||| Sbjct 22479 CTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTG 22420 Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997 ||| | || |||| || ||||||||||| || |||||||| ||||| || || |||| Sbjct 22419 CTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTGGCCGCTCATG 22360 Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACT 43057 |||| ||||| || | |||||||||||||| ||||| || ||| ||||| |||| Sbjct 22359 GTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACT 22300 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || |||||||| || || ||||||||||||||| || | || | ||||||| Sbjct 22299 TCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTA 22240 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || || | || || || || || |||||||| | ||||||| || || | Sbjct 22239 TGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCG 22180 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || ||||||||||||||| | || ||||| || ||||| | || || ||||| | Sbjct 22179 TTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTTATGCATG 22120 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 | || ||||| ||||||||||| || || || || Sbjct 22119 AACGTAATGCTCATAACTTCCCTCTAGACCTAGC 22086 >seq647 Length=36880 Score = 269 bits (298), Expect = 8e-68 Identities = 396/558 (71%), Gaps = 2/558 (0%) Strand=Plus/Minus Query 42378 CTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAAC 42436 |||| |||||| |||| ||||||||||| ||||| ||||| |||||| |||||||| | Sbjct 14168 CTGTATTTATTTTCGCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGC 14109 Query 42437 CTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCA 42496 |||| ||||| ||||| || || || ||||| || ||||| |||| | | |||| Sbjct 14108 CTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTACTT 14049 Query 42497 GTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGC 42556 || || || || | || || || ||||||||||||| || |||| |||||| Sbjct 14048 CTACAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTGATGAATGGT 13989 Query 42557 TCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTT 42616 | ||||||||||| |||||| |||| | || | |||||| | | ||| | | | || Sbjct 13988 TATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTGTT 13929 Query 42617 ACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTG 42676 || |||| || || ||||||||| | ||| | || ||| || | ||| |||||| Sbjct 13928 ACATGGGTCGTGAGTGGGAACTTAGCTTCCGTTTGGGTATGCAACCTTTGATTGTTGTTG 13869 Query 42677 CTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAG 42736 | || || || | ||| || || || ||||| || ||| | |||| ||| |||| ||| Sbjct 13868 CATATTCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAG 13809 Query 42737 GTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCT 42796 | |||||| |||| |||||| | || || || ||||| |||||||||||| | || Sbjct 13808 GAAGTTTTTCTAATGGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTAC 13749 Query 42797 TCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCG-GCGTA 42855 |||| ||||| || ||||| |||||||| | || || ||| | ||| | || | | ||| Sbjct 13748 TCCATGCTGAGCACAACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTA 13689 Query 42856 TTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGT 42915 || || || || ||| |||||||||||| | | || || ||| | | | | Sbjct 13688 TTCGGCGGCTCCCCATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGG 13629 Query 42916 GAAACGACTGAAAACGAA 42933 ||||| || ||||| ||| Sbjct 13628 GAAACCACAGAAAATGAA 13611 >seq24083 Length=1989 Score = 150 bits (166), Expect = 5e-32 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43044 TCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCT 43103 ||| ||||| || ||||| || || |||||||| || || || || ||||||||| || | Sbjct 733 TCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTT 792 Query 43104 TGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGA 43163 || |||| |||||||| || ||| | |||||||| || || ||||||| | ||||| Sbjct 793 AGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATATGTAGTTGA 852 Query 43164 TAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTT 43223 || ||| | ||| || ||| ||||||||||| | || ||||| || ||||| | Sbjct 853 TAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTAT 912 Query 43224 TGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 || || ||||| || || ||||| ||||||||||| || || || || Sbjct 913 GGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 960 >seq20 Length=236725 Score = 150 bits (166), Expect = 5e-32 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43044 TCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCT 43103 ||| ||||| || ||||| || || |||||||| || || || || ||||||||| || | Sbjct 78404 TCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTT 78463 Query 43104 TGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGA 43163 || |||| |||||||| || ||| | |||||||| || || ||||||| | ||||| Sbjct 78464 AGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGA 78523 Query 43164 TAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTT 43223 || ||| | ||| || ||| ||||||||||| | || ||||| || ||||| | Sbjct 78524 TAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTAT 78583 Query 43224 TGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 || || ||||| || || ||||| ||||||||||| || || || || Sbjct 78584 GGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 78631 >seq574 Length=41708 Score = 149 bits (164), Expect = 2e-31 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 43050 TTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGT 43109 ||| || ||||| || || |||||||| || || || || ||||||||| || | || | Sbjct 2268 TTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 2327 Query 43110 CAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCA 43169 ||| |||||||| || ||| | |||||||| || || |||||||| | ||||||| ||| Sbjct 2328 CAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 2387 Query 43170 GAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGT 43229 | ||| || ||| ||||||||||| | || ||||| || ||||| | || || Sbjct 2388 AGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGT 2447 Query 43230 GATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 ||||| || || ||||| ||||||||||| || || || || Sbjct 2448 TATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 2489 >seq6733 Length=89479 Score = 141 bits (156), Expect = 3e-29 Identities = 222/311 (71%), Gaps = 5/311 (2%) Strand=Plus/Plus Query 42289 TTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTG 42348 || ||||||| | | ||| ||| | |||| |||||| |||| |||||||||| || Sbjct 8734 TTCTGTAACTAGATAACTAACACTGAAAACCATCTTTACATTGGACGGTTTGGTGTTTTG 8793 Query 42349 ATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCC 42406 ||||| |||| || | | || || | ||| |||||| |||| ||||||||||| | Sbjct 8794 ATGAT-CCCTACCTTATTAACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTC 8851 Query 42407 CTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACA 42466 |||| ||||| |||||||| |||||||| ||||| ||||| ||||| || ||||| |||| Sbjct 8852 CTCCAGTAGATATTGATGGGATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACA 8911 Query 42467 ACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGA 42526 | || ||||| |||||| | | |||| | || || || | || || || | | Sbjct 8912 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAA 8971 Query 42527 TCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCG 42586 ||| |||||| || |||| |||||| | ||| || || |||||| || | | | Sbjct 8972 TCT-GGAAGCGGCATCCGTTGATGAATGGTGGTCCAACGGTGGTCCTTATGAGATAATTG 9030 Query 42587 TGTTCCACTTC 42597 | | |||||| Sbjct 9031 TTCTACACTTC 9041 >seq10199 Length=21994 Score = 125 bits (138), Expect = 2e-24 Identities = 197/282 (70%), Gaps = 24/282 (9%) Strand=Plus/Plus Query 42940 AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGT 42999 ||| | ||||||| |||||||||||||| || |||||||| || || || || ||||| Sbjct 14222 AATAAAGGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGC 14281 Query 43000 TACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTT 43058 || ||| |||||||||||||| | |||| || || || ||||| || || Sbjct 14282 TA--TTG--------ATCTTCCAATATGC-TAGTTTCAACAACTCTCTTTCTTTACATTT 14330 Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118 ||| || | |||||||| || || || || ||||||||| || | || |||| ||||| Sbjct 14331 CTTCCTAACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTAT 14390 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGT 43178 ||| || ||| | |||||| ||||| | ||||||| ||| | ||| Sbjct 14391 GGCTTTCAACCTAAATGGT------------CAATCTGTAGTTGATAGTCAAGGCCGTGT 14438 Query 43179 CATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGG 43220 || || ||||||||||| | || ||||| || ||||| Sbjct 14439 AATTAACACCTGGGCTGATATCATTAACCGTGCTAATCTTGG 14480 >seq6008 Length=80333 Score = 120 bits (132), Expect = 9e-23 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 43063 CTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCG 43122 || || |||||||| || || || || ||||||||| || | || |||| |||||||| Sbjct 50675 CTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCT 50616 Query 43123 TTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATC 43182 || ||| | |||||||| || || ||||||| | |||| || ||| | ||| || Sbjct 50615 TTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGGTAGTCAAGGCCGTGTAATT 50556 Query 43183 CCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGG 43242 ||| ||||||||||| | || ||||| || ||||| | | || |||| || || Sbjct 50555 AATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGTAAGTTGTGCATGAACGT 50496 Query 43243 AATGCACATAACTTCCCGCTTGATCTTGC 43271 ||||| ||||||||||| || || || || Sbjct 50495 AATGCTCATAACTTCCCTCTAGACCTAGC 50467 >seq7956 Length=50133 Score = 84.2 bits (92), Expect = 6e-12 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 43048 TCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGC 43107 ||||| || ||||| || | |||||||| | || || || || |||||| || | | Sbjct 30817 TCTTTACATTTCTTCCTAACTGCTTGGCCTTTAGTAGGTATCTGATTCACTGCTTTAGAT 30758 Query 43108 GTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAAT 43167 ||| |||||||| || ||| | |||||||| || || |||||||| | ||||||| | Sbjct 30757 ATCAACACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGT 30698 Query 43168 CAGAATCA-TGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGA 43226 || | || ||| || || ||||||||||| | || ||| || ||||| ||| Sbjct 30697 CA-AGGCAGTGTAATTAATATCTGGGCTGATATCATTAACCGTATTAATCTTGGTCTTGT 30639 Query 43227 GGT 43229 ||| Sbjct 30638 GGT 30636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143487255338108