Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_020867.1
Length=44892
Score E
Sequences producing significant alignments: (Bits) Value
seq16707 535 1e-147
seq647 269 8e-68
seq24083 150 5e-32
seq20 150 5e-32
seq574 149 2e-31
seq6733 141 3e-29
seq10199 125 2e-24
seq6008 120 9e-23
seq7956 84.2 6e-12
>seq16707
Length=103149
Score = 535 bits (592), Expect = 1e-147
Identities = 718/994 (72%), Gaps = 4/994 (0%)
Strand=Plus/Minus
Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339
|||| || || || |||||| | ||| || | ||||||||||| | || |||||
Sbjct 23077 TGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTC 23018
Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397
||||| ||||||| |||| || | | || || | ||| |||||| |||| ||||
Sbjct 23017 GGTGTTTTGATGAT-CCCTACCTTATTAACCGCAACTTC-TGTATTTATTATCGCCTTCA 22960
Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457
| ||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||| | || |
Sbjct 22959 TCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTT 22900
Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517
| || ||||| || |||||||||||| | | |||| | || || || | || |
Sbjct 22899 ACGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACT 22840
Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577
| || | ||||||||||| | |||| |||||| | ||||||||||| ||||||
Sbjct 22839 TTTACCCAATCTGGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATG 22780
Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637
|||| | || | |||||| | | ||| | | ||| |||| || || |||||||
Sbjct 22779 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 22720
Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697
| | ||| || || ||| | || ||||| |||||| || || || ||||| || |
Sbjct 22719 TGAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 22660
Query 42698 CAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGC 42757
| || ||||| || ||| | | || || |||| ||||| ||| || ||||| ||||
Sbjct 22659 CTGCTACTGCTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGC 22600
Query 42758 CTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTC 42817
|| | || || || ||||| |||||||| ||| | || |||||||| || |||||||| |
Sbjct 22599 CTTTAGGAATATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCC 22540
Query 42818 TTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAG 42877
|||||||||| || || ||| | ||||| || || ||||| || || || | ||| |
Sbjct 22539 TTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTG 22480
Query 42878 CTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCC 42937
||||||||||| | || |||||| | | | | ||||| ||||||||||||
Sbjct 22479 CTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTG 22420
Query 42938 AAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATG 42997
||| | || |||| || ||||||||||| || |||||||| ||||| || || ||||
Sbjct 22419 CTAATGAGGGTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTGGCCGCTCATG 22360
Query 42998 GTTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTTAATAATAGTCGCTCTTTGCACT 43057
|||| ||||| || | |||||||||||||| ||||| || ||| ||||| ||||
Sbjct 22359 GTTATTTTGGCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACT 22300
Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117
|||| | || |||||||| || || ||||||||||||||| || | || | |||||||
Sbjct 22299 TCTTCTTGGCTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTA 22240
Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177
|||| || || | || || || || || |||||||| | ||||||| || || |
Sbjct 22239 TGGCTTTCAATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCG 22180
Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237
| || ||||||||||||||| | || ||||| || ||||| | || || ||||| |
Sbjct 22179 TTATTAATACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTTATGCATG 22120
Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271
| || ||||| ||||||||||| || || || ||
Sbjct 22119 AACGTAATGCTCATAACTTCCCTCTAGACCTAGC 22086
>seq647
Length=36880
Score = 269 bits (298), Expect = 8e-68
Identities = 396/558 (71%), Gaps = 2/558 (0%)
Strand=Plus/Minus
Query 42378 CTGT-TTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAAC 42436
|||| |||||| |||| ||||||||||| ||||| ||||| |||||| |||||||| |
Sbjct 14168 CTGTATTTATTTTCGCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGC 14109
Query 42437 CTGTCTCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCA 42496
|||| ||||| ||||| || || || ||||| || ||||| |||| | | ||||
Sbjct 14108 CTGTTTCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTACTT 14049
Query 42497 GTAACGCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGC 42556
|| || || || | || || || ||||||||||||| || |||| ||||||
Sbjct 14048 CTACAGCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTGATGAATGGT 13989
Query 42557 TCTACAATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTT 42616
| ||||||||||| |||||| |||| | || | |||||| | | ||| | | | ||
Sbjct 13988 TATACAATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTGTT 13929
Query 42617 ACTTGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTG 42676
|| |||| || || ||||||||| | ||| | || ||| || | ||| ||||||
Sbjct 13928 ACATGGGTCGTGAGTGGGAACTTAGCTTCCGTTTGGGTATGCAACCTTTGATTGTTGTTG 13869
Query 42677 CTTACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAG 42736
| || || || | ||| || || || ||||| || ||| | |||| ||| |||| |||
Sbjct 13868 CATATTCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAG 13809
Query 42737 GTTCTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCT 42796
| |||||| |||| |||||| | || || || ||||| |||||||||||| | ||
Sbjct 13808 GAAGTTTTTCTAATGGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTAC 13749
Query 42797 TCCAGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCG-GCGTA 42855
|||| ||||| || ||||| |||||||| | || || ||| | ||| | || | | |||
Sbjct 13748 TCCATGCTGAGCACAACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTA 13689
Query 42856 TTTGGTGGGTCGTTGTTCTCAGCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGT 42915
|| || || || ||| |||||||||||| | | || || ||| | | | |
Sbjct 13688 TTCGGCGGCTCCCCATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGG 13629
Query 42916 GAAACGACTGAAAACGAA 42933
||||| || ||||| |||
Sbjct 13628 GAAACCACAGAAAATGAA 13611
>seq24083
Length=1989
Score = 150 bits (166), Expect = 5e-32
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43044 TCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCT 43103
||| ||||| || ||||| || || |||||||| || || || || ||||||||| || |
Sbjct 733 TCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTT 792
Query 43104 TGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGA 43163
|| |||| |||||||| || ||| | |||||||| || || ||||||| | |||||
Sbjct 793 AGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATATGTAGTTGA 852
Query 43164 TAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTT 43223
|| ||| | ||| || ||| ||||||||||| | || ||||| || ||||| |
Sbjct 853 TAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTAT 912
Query 43224 TGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271
|| || ||||| || || ||||| ||||||||||| || || || ||
Sbjct 913 GGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 960
>seq20
Length=236725
Score = 150 bits (166), Expect = 5e-32
Identities = 170/228 (75%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 43044 TCGCTCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCT 43103
||| ||||| || ||||| || || |||||||| || || || || ||||||||| || |
Sbjct 78404 TCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTT 78463
Query 43104 TGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGA 43163
|| |||| |||||||| || ||| | |||||||| || || ||||||| | |||||
Sbjct 78464 AGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGA 78523
Query 43164 TAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTT 43223
|| ||| | ||| || ||| ||||||||||| | || ||||| || ||||| |
Sbjct 78524 TAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTAT 78583
Query 43224 TGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271
|| || ||||| || || ||||| ||||||||||| || || || ||
Sbjct 78584 GGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 78631
>seq574
Length=41708
Score = 149 bits (164), Expect = 2e-31
Identities = 166/222 (75%), Gaps = 0/222 (0%)
Strand=Plus/Plus
Query 43050 TTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGT 43109
||| || ||||| || || |||||||| || || || || ||||||||| || | || |
Sbjct 2268 TTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTAT 2327
Query 43110 CAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCA 43169
||| |||||||| || ||| | |||||||| || || |||||||| | ||||||| |||
Sbjct 2328 CAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCA 2387
Query 43170 GAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGT 43229
| ||| || ||| ||||||||||| | || ||||| || ||||| | || ||
Sbjct 2388 AGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGT 2447
Query 43230 GATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271
||||| || || ||||| ||||||||||| || || || ||
Sbjct 2448 TATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 2489
>seq6733
Length=89479
Score = 141 bits (156), Expect = 3e-29
Identities = 222/311 (71%), Gaps = 5/311 (2%)
Strand=Plus/Plus
Query 42289 TTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTG 42348
|| ||||||| | | ||| ||| | |||| |||||| |||| |||||||||| ||
Sbjct 8734 TTCTGTAACTAGATAACTAACACTGAAAACCATCTTTACATTGGACGGTTTGGTGTTTTG 8793
Query 42349 ATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCATTGCTGCCC 42406
||||| |||| || | | || || | ||| |||||| |||| ||||||||||| |
Sbjct 8794 ATGAT-CCCTACCTTATTAACCGCAACTTC-TGTATTTATTATCGCCTTCATTGCTGCTC 8851
Query 42407 CTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACA 42466
|||| ||||| |||||||| |||||||| ||||| ||||| ||||| || ||||| ||||
Sbjct 8852 CTCCAGTAGATATTGATGGGATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACA 8911
Query 42467 ACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTTGTATTCGA 42526
| || ||||| |||||| | | |||| | || || || | || || || | |
Sbjct 8912 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAA 8971
Query 42527 TCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCAGCTCGTCG 42586
||| |||||| || |||| |||||| | ||| || || |||||| || | | |
Sbjct 8972 TCT-GGAAGCGGCATCCGTTGATGAATGGTGGTCCAACGGTGGTCCTTATGAGATAATTG 9030
Query 42587 TGTTCCACTTC 42597
| | ||||||
Sbjct 9031 TTCTACACTTC 9041
>seq10199
Length=21994
Score = 125 bits (138), Expect = 2e-24
Identities = 197/282 (70%), Gaps = 24/282 (9%)
Strand=Plus/Plus
Query 42940 AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGT 42999
||| | ||||||| |||||||||||||| || |||||||| || || || || |||||
Sbjct 14222 AATAAAGGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGC 14281
Query 43000 TACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTT 43058
|| ||| |||||||||||||| | |||| || || || ||||| || ||
Sbjct 14282 TA--TTG--------ATCTTCCAATATGC-TAGTTTCAACAACTCTCTTTCTTTACATTT 14330
Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118
||| || | |||||||| || || || || ||||||||| || | || |||| |||||
Sbjct 14331 CTTCCTAACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTAT 14390
Query 43119 GGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGT 43178
||| || ||| | |||||| ||||| | ||||||| ||| | |||
Sbjct 14391 GGCTTTCAACCTAAATGGT------------CAATCTGTAGTTGATAGTCAAGGCCGTGT 14438
Query 43179 CATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGG 43220
|| || ||||||||||| | || ||||| || |||||
Sbjct 14439 AATTAACACCTGGGCTGATATCATTAACCGTGCTAATCTTGG 14480
>seq6008
Length=80333
Score = 120 bits (132), Expect = 9e-23
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 43063 CTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGGCG 43122
|| || |||||||| || || || || ||||||||| || | || |||| ||||||||
Sbjct 50675 CTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCT 50616
Query 43123 TTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATGTCATC 43182
|| ||| | |||||||| || || ||||||| | |||| || ||| | ||| ||
Sbjct 50615 TTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGGTAGTCAAGGCCGTGTAATT 50556
Query 43183 CCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACGAGCGG 43242
||| ||||||||||| | || ||||| || ||||| | | || |||| || ||
Sbjct 50555 AATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGTAAGTTGTGCATGAACGT 50496
Query 43243 AATGCACATAACTTCCCGCTTGATCTTGC 43271
||||| ||||||||||| || || || ||
Sbjct 50495 AATGCTCATAACTTCCCTCTAGACCTAGC 50467
>seq7956
Length=50133
Score = 84.2 bits (92), Expect = 6e-12
Identities = 130/183 (71%), Gaps = 2/183 (1%)
Strand=Plus/Minus
Query 43048 TCTTTGCACTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGC 43107
||||| || ||||| || | |||||||| | || || || || |||||| || | |
Sbjct 30817 TCTTTACATTTCTTCCTAACTGCTTGGCCTTTAGTAGGTATCTGATTCACTGCTTTAGAT 30758
Query 43108 GTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAAT 43167
||| |||||||| || ||| | |||||||| || || |||||||| | ||||||| |
Sbjct 30757 ATCAACACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGT 30698
Query 43168 CAGAATCA-TGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGA 43226
|| | || ||| || || ||||||||||| | || ||| || ||||| |||
Sbjct 30697 CA-AGGCAGTGTAATTAATATCTGGGCTGATATCATTAACCGTATTAATCTTGGTCTTGT 30639
Query 43227 GGT 43229
|||
Sbjct 30638 GGT 30636
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143487255338108
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