Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq16707 491 1e-134
seq647 237 5e-58
seq24083 161 3e-35
seq20 161 3e-35
seq574 154 4e-33
seq6008 125 2e-24
seq6733 120 9e-23
seq10199 105 2e-18
>seq16707
Length=103149
Score = 491 bits (544), Expect = 1e-134
Identities = 700/977 (72%), Gaps = 6/977 (1%)
Strand=Plus/Plus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||||||||||||||| || ||||||||||| | || || |||
Sbjct 22086 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 22145
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995
|| ||||| | | ||||||||| ||| || || | | || | ||| ||||| ||
Sbjct 22146 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAACTACAGA 22204
Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055
||||| || || || || ||||| || || ||||| || | ||||| | || || |
Sbjct 22205 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 22264
Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115
||| || || || || ||||||| ||| | ||||| || | |||||| ||| |||||
Sbjct 22265 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 22324
Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175
||| ||||| || || ||||||| ||||| || || || || || ||||||||||| ||
Sbjct 22325 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 22384
Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235
||||| ||||| ||||| | || || | ||| || | | || || |||||
Sbjct 22385 TTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCT 22444
Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295
|| | || || ||||| || ||||||||| ||| || | || ||||| ||
Sbjct 22445 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 22504
Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355
||||| ||||| ||| || ||||| ||||| || || ||||| ||||| ||||||||
Sbjct 22505 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATAC 22564
Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415
| ||||||||| ||||||||||| || || | |||||| |||||| ||||| |||||
Sbjct 22565 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 22624
Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475
|| | ||| |||| ||||| || || ||| || | | || |||| |||||||||
Sbjct 22625 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 22684
Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535
| ||||| || | ||| || || | | || |||||||||| | || |||
Sbjct 22685 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 22744
Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595
||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| |||
Sbjct 22745 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 22804
Query 26596 CTCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGG 26654
|| || | | |||| ||||||||||| |||||||| || | || || || ||| |
Sbjct 22805 TTCATCAACAGATGCC-GCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAG 22863
Query 26655 AGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCT 26714
|| | | || || || || |||||||||||||| | ||| || || ||||| ||||
Sbjct 22864 TAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCT 22923
Query 26715 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTA 26773
|||| || ||||| |||||||| || || || ||||||||||| | ||||| ||| | |
Sbjct 22924 CACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAA 22982
Query 26774 GTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTC 26833
|| || | | |||| || ||||| | || ||||||||||| | || ||||||||
Sbjct 22983 GTTGCGGTTAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTT 23042
Query 26834 TCAGTACTTGTAACCCA 26850
|| || || || | |||
Sbjct 23043 TCGGTGCTAGTTATCCA 23059
>seq647
Length=36880
Score = 237 bits (262), Expect = 5e-58
Identities = 373/525 (71%), Gaps = 7/525 (1%)
Strand=Plus/Plus
Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCC-CAGCAAC 26304
||||| |||||| || ||||||||| ||| | | || ||||| |||| |||| |
Sbjct 13642 GAAGTTACCAAAGAACCATGCATAGCACTGAATGGGGAGCCGCCGAATACCCACAGCTAT 13701
Query 26305 ACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAA 26364
||| ||| || |||| |||||| || || || || || || |||| ||||| ||| ||
Sbjct 13702 ACCTAACATGTGAAATGTGTGCATAAGGATGTTGTGCTCAGCATGGAGTACGATCATGAA 13761
Query 26365 GTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGG 26424
||| |||||||||||||| || | |||||| |||| | |||||| |||| || | ||
Sbjct 13762 GTTGAAAGTACCAGAGATTCCTACAGGCATACCATTAGAAAAACTTCCTTAACCAATTGG 13821
Query 26425 ATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCA 26484
|| | ||||| || || ||| || | | | |||| ||||||||||| ||| |
Sbjct 13822 GTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAAGAGCTGAATATGCAACAACAATCAA 13881
Query 26485 TGGTCTCATTCCTAGTCTGTAAGAT-AGTTCCCACTGTCTCCCTGCATATGCTGCTACTC 26543
||| ||| || | | | ||| | |||||||||| | || || |||| |
Sbjct 13882 AGGTTGCATACCCAAAC-GGAAGCTAAGTTCCCACTCACGACCCATGTAACACACTACAC 13940
Query 26544 CTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCA 26603
| | |||||||| | | ||| || | ||| || ||||||||||||| ||| || || |
Sbjct 13941 CAAGCAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAA 14000
Query 26604 -GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACG 26662
| |||| |||||||||||||||||||| || | || || || |||| | |||
Sbjct 14001 TGGATGCC-GCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGTAGAAG-TAGGATT 14058
Query 26663 ACTG-CTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTAT 26721
| || | ||||| || |||||||||||||| | || || || ||||| |||||||| ||
Sbjct 14059 AATGACACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAAT 14118
Query 26722 GCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766
||||| |||||| || || || || |||||||| | |||||
Sbjct 14119 ACCATCAGCATCTACTGGAGGAGCAGCAATGAAGGCGAAAATAAA 14163
>seq24083
Length=1989
Score = 161 bits (178), Expect = 3e-35
Identities = 184/246 (75%), Gaps = 1/246 (0%)
Strand=Plus/Minus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||||||||||||||| || ||||||||||| | || || |||
Sbjct 960 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 901
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996
|| ||||| | | ||||||||| ||| |||| || | | ||| ||||| |
Sbjct 900 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACATAT 841
Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056
||||| || || |||||||||||||| || ||||| |||| |||||| | || || | |
Sbjct 840 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 781
Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATT-AAA 26115
|| || || || || ||||||| ||| || |||||||| | |||||| ||| || |||
Sbjct 780 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTCAAA 721
Query 26116 ACTCGC 26121
||| ||
Sbjct 720 ACTTGC 715
>seq20
Length=236725
Score = 161 bits (178), Expect = 3e-35
Identities = 184/246 (75%), Gaps = 1/246 (0%)
Strand=Plus/Minus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||||||||||||||| || ||||||||||| | || || |||
Sbjct 78631 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 78572
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996
|| ||||| | | ||||||||| ||| |||| || | | ||| ||||| |
Sbjct 78571 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAAAT 78512
Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056
||||| || || |||||||||||||| || ||||| |||| |||||| | || || | |
Sbjct 78511 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 78452
Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATT-AAA 26115
|| || || || || ||||||| ||| || |||||||| | |||||| ||| || |||
Sbjct 78451 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTCAAA 78392
Query 26116 ACTCGC 26121
||| ||
Sbjct 78391 ACTTGC 78386
>seq574
Length=41708
Score = 154 bits (170), Expect = 4e-33
Identities = 165/218 (76%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||||||||||||||| || ||||||||||| | || || |||
Sbjct 2489 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2430
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996
|| ||||| | | ||||||||| ||| |||| || | | ||| ||||| ||
Sbjct 2429 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGAT 2370
Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056
||||| || || |||||||||||||| || ||||| |||| |||||| | || || | |
Sbjct 2369 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 2310
Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATG 26094
|| || || || || ||||||| ||| || ||||||||
Sbjct 2309 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATG 2272
>seq6008
Length=80333
Score = 125 bits (138), Expect = 2e-24
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||||||||||||||| || |||| ||||| | || || |||
Sbjct 50467 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAGATTA 50526
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996
|| ||||| | | ||||||||| ||| |||| || | | | | ||||| |
Sbjct 50527 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTACCAACTACAAAT 50586
Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056
||||| || || |||||||||||||| || ||||| |||| |||||| | || || | |
Sbjct 50587 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 50646
Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAG 26085
|| || || || || ||||||| ||| ||
Sbjct 50647 CAGATACCTACTACAGGCCAAGCAGCTAG 50675
>seq6733
Length=89479
Score = 120 bits (132), Expect = 9e-23
Identities = 213/304 (70%), Gaps = 5/304 (2%)
Strand=Plus/Minus
Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596
||||| || | ||||||||| | | ||| | | ||| || || || ||| | |||
Sbjct 9055 GCTACACCAAGTAAGAAGTGTAGAACAATTATCTCATAAGGACCACCGTTGGACCACCAT 8996
Query 26597 TCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655
|| || | | |||| |||||| |||| |||||||| || | || || || ||| |
Sbjct 8995 TCATCAACGGATGCC-GCTTCC-AGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGT 8938
Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715
|| | | || ||||| || ||||||||||| || | || || || ||||| |||||
Sbjct 8937 AGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTC 8878
Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774
||| || ||||| |||||||| || || || || |||||||| | ||||| ||| | ||
Sbjct 8877 ACGAATCCCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAG 8819
Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834
| || | | |||| || ||||| | || || |||| ||| | || ||| |||| |
Sbjct 8818 TTGCGGTTAATAAGGTAGGGATCATCAAAACACCAAACCGTCCAATGTAAAGATGGTTTT 8759
Query 26835 CAGT 26838
||||
Sbjct 8758 CAGT 8755
>seq10199
Length=21994
Score = 105 bits (116), Expect = 2e-18
Identities = 141/198 (71%), Gaps = 10/198 (5%)
Strand=Plus/Minus
Query 26011 ACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAAC 26070
|||||||||||| || ||||| |||| |||||| | || || | ||| || || || ||
Sbjct 14409 ACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTAC 14350
Query 26071 CGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAA 26130
||||||| || || |||||||| | |||| | ||| || ||||| ||||| || ||
Sbjct 14349 AGGCCAAGCAGTTAGGAAGAAATGTAAAGAAAGAGAGTTGTTGAAACTAGCATATTGGAA 14290
Query 26131 AATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCC 26190
|| || || || || ||||| || |||||||| || ||||| ||||| ||
Sbjct 14289 GATCAA----------TAGCCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACC 14240
Query 26191 AAACTTATAGCCATAATT 26208
|| | ||||| | |||
Sbjct 14239 GAATCTGTAGCCTTTATT 14222
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147665129228320
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