Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq16707 491 1e-134 seq647 237 5e-58 seq24083 161 3e-35 seq20 161 3e-35 seq574 154 4e-33 seq6008 125 2e-24 seq6733 120 9e-23 seq10199 105 2e-18 >seq16707 Length=103149 Score = 491 bits (544), Expect = 1e-134 Identities = 700/977 (72%), Gaps = 6/977 (1%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || || ||| Sbjct 22086 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 22145 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAAC-ATCTACTACTGA 25995 || ||||| | | ||||||||| ||| || || | | || | ||| ||||| || Sbjct 22146 GCACGGTTGATGATATCAGCCCAAGTAT-TAATAACGCGACCTTGGCTATCAACTACAGA 22204 Query 25996 CTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAG 26055 ||||| || || || || ||||| || || ||||| || | ||||| | || || | Sbjct 22205 TTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAGTGAA 22264 Query 26056 CCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAA 26115 ||| || || || || ||||||| ||| | ||||| || | |||||| ||| ||||| Sbjct 22265 CCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTTGTTAAA 22324 Query 26116 ACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGT 26175 ||| ||||| || || ||||||| ||||| || || || || || ||||||||||| || Sbjct 22325 ACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTATAAGT 22384 Query 26176 CTCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGC 26235 ||||| ||||| ||||| | || || | ||| || | | || || ||||| Sbjct 22385 TTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTTTCCCT 22444 Query 26236 AATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAAC 26295 || | || || ||||| || ||||||||| ||| || | || ||||| || Sbjct 22445 GATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCCGAATAC 22504 Query 26296 CCCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATAC 26355 ||||| ||||| ||| || ||||| ||||| || || ||||| ||||| |||||||| Sbjct 22505 ACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTGGAATAC 22564 Query 26356 GAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTG 26415 | ||||||||| ||||||||||| || || | |||||| |||||| ||||| ||||| Sbjct 22565 AATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACTTCCTTG 22624 Query 26416 TCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAAC 26475 || | ||| |||| ||||| || || ||| || | | || |||| ||||||||| Sbjct 22625 ACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAAC 22684 Query 26476 AAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGC 26535 | ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 22685 AGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCATATAACA 22744 Query 26536 TGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCA 26595 ||||| || | ||||||||| | | ||| || | ||| || ||||||||||||| ||| Sbjct 22745 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCA 22804 Query 26596 CTCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGG 26654 || || | | |||| ||||||||||| |||||||| || | || || || ||| | Sbjct 22805 TTCATCAACAGATGCC-GCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAG 22863 Query 26655 AGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCT 26714 || | | || || || || |||||||||||||| | ||| || || ||||| |||| Sbjct 22864 TAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGAAACAGGCT 22923 Query 26715 CACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTA 26773 |||| || ||||| |||||||| || || || ||||||||||| | ||||| ||| | | Sbjct 22924 CACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAATACA-GAA 22982 Query 26774 GTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTC 26833 || || | | |||| || ||||| | || ||||||||||| | || |||||||| Sbjct 22983 GTTGCGGTTAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTT 23042 Query 26834 TCAGTACTTGTAACCCA 26850 || || || || | ||| Sbjct 23043 TCGGTGCTAGTTATCCA 23059 >seq647 Length=36880 Score = 237 bits (262), Expect = 5e-58 Identities = 373/525 (71%), Gaps = 7/525 (1%) Strand=Plus/Plus Query 26246 GAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCC-CAGCAAC 26304 ||||| |||||| || ||||||||| ||| | | || ||||| |||| |||| | Sbjct 13642 GAAGTTACCAAAGAACCATGCATAGCACTGAATGGGGAGCCGCCGAATACCCACAGCTAT 13701 Query 26305 ACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAA 26364 ||| ||| || |||| |||||| || || || || || || |||| ||||| ||| || Sbjct 13702 ACCTAACATGTGAAATGTGTGCATAAGGATGTTGTGCTCAGCATGGAGTACGATCATGAA 13761 Query 26365 GTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGG 26424 ||| |||||||||||||| || | |||||| |||| | |||||| |||| || | || Sbjct 13762 GTTGAAAGTACCAGAGATTCCTACAGGCATACCATTAGAAAAACTTCCTTAACCAATTGG 13821 Query 26425 ATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCA 26484 || | ||||| || || ||| || | | | |||| ||||||||||| ||| | Sbjct 13822 GTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAAGAGCTGAATATGCAACAACAATCAA 13881 Query 26485 TGGTCTCATTCCTAGTCTGTAAGAT-AGTTCCCACTGTCTCCCTGCATATGCTGCTACTC 26543 ||| ||| || | | | ||| | |||||||||| | || || |||| | Sbjct 13882 AGGTTGCATACCCAAAC-GGAAGCTAAGTTCCCACTCACGACCCATGTAACACACTACAC 13940 Query 26544 CTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCA 26603 | | |||||||| | | ||| || | ||| || ||||||||||||| ||| || || | Sbjct 13941 CAAGCAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAA 14000 Query 26604 -GTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACG 26662 | |||| |||||||||||||||||||| || | || || || |||| | ||| Sbjct 14001 TGGATGCC-GCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGTAGAAG-TAGGATT 14058 Query 26663 ACTG-CTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTAT 26721 | || | ||||| || |||||||||||||| | || || || ||||| |||||||| || Sbjct 14059 AATGACACCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAAT 14118 Query 26722 GCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA 26766 ||||| |||||| || || || || |||||||| | ||||| Sbjct 14119 ACCATCAGCATCTACTGGAGGAGCAGCAATGAAGGCGAAAATAAA 14163 >seq24083 Length=1989 Score = 161 bits (178), Expect = 3e-35 Identities = 184/246 (75%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || || ||| Sbjct 960 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 901 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| | Sbjct 900 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACATAT 841 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| |||||| | || || | | Sbjct 840 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 781 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATT-AAA 26115 || || || || || ||||||| ||| || |||||||| | |||||| ||| || ||| Sbjct 780 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTCAAA 721 Query 26116 ACTCGC 26121 ||| || Sbjct 720 ACTTGC 715 >seq20 Length=236725 Score = 161 bits (178), Expect = 3e-35 Identities = 184/246 (75%), Gaps = 1/246 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || || ||| Sbjct 78631 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 78572 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| | Sbjct 78571 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAAAT 78512 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| |||||| | || || | | Sbjct 78511 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 78452 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATT-AAA 26115 || || || || || ||||||| ||| || |||||||| | |||||| ||| || ||| Sbjct 78451 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTTGTTCAAA 78392 Query 26116 ACTCGC 26121 ||| || Sbjct 78391 ACTTGC 78386 >seq574 Length=41708 Score = 154 bits (170), Expect = 4e-33 Identities = 165/218 (76%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || || ||| Sbjct 2489 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTA 2430 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | ||| ||||| || Sbjct 2429 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGAT 2370 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| |||||| | || || | | Sbjct 2369 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 2310 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATG 26094 || || || || || ||||||| ||| || |||||||| Sbjct 2309 CAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATG 2272 >seq6008 Length=80333 Score = 125 bits (138), Expect = 2e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || |||| ||||| | || || ||| Sbjct 50467 GCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAGATTA 50526 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| |||| || | | | | ||||| | Sbjct 50527 GCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTACCAACTACAAAT 50586 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| |||| |||||| | || || | | Sbjct 50587 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAAC 50646 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAG 26085 || || || || || ||||||| ||| || Sbjct 50647 CAGATACCTACTACAGGCCAAGCAGCTAG 50675 >seq6733 Length=89479 Score = 120 bits (132), Expect = 9e-23 Identities = 213/304 (70%), Gaps = 5/304 (2%) Strand=Plus/Minus Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||||||||| | | ||| | | ||| || || || ||| | ||| Sbjct 9055 GCTACACCAAGTAAGAAGTGTAGAACAATTATCTCATAAGGACCACCGTTGGACCACCAT 8996 Query 26597 TCGTCCAGTG-TGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGA 26655 || || | | |||| |||||| |||| |||||||| || | || || || ||| | Sbjct 8995 TCATCAACGGATGCC-GCTTCC-AGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGT 8938 Query 26656 GGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTC 26715 || | | || ||||| || ||||||||||| || | || || || ||||| ||||| Sbjct 8937 AGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTC 8878 Query 26716 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAA-ACATGTAG 26774 ||| || ||||| |||||||| || || || || |||||||| | ||||| ||| | || Sbjct 8877 ACGAATCCCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAG 8819 Query 26775 TGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCT 26834 | || | | |||| || ||||| | || || |||| ||| | || ||| |||| | Sbjct 8818 TTGCGGTTAATAAGGTAGGGATCATCAAAACACCAAACCGTCCAATGTAAAGATGGTTTT 8759 Query 26835 CAGT 26838 |||| Sbjct 8758 CAGT 8755 >seq10199 Length=21994 Score = 105 bits (116), Expect = 2e-18 Identities = 141/198 (71%), Gaps = 10/198 (5%) Strand=Plus/Minus Query 26011 ACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATGCCAACAAC 26070 |||||||||||| || ||||| |||| |||||| | || || | ||| || || || || Sbjct 14409 ACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTAC 14350 Query 26071 CGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAA 26130 ||||||| || || |||||||| | |||| | ||| || ||||| ||||| || || Sbjct 14349 AGGCCAAGCAGTTAGGAAGAAATGTAAAGAAAGAGAGTTGTTGAAACTAGCATATTGGAA 14290 Query 26131 AATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCC 26190 || || || || || ||||| || |||||||| || ||||| ||||| || Sbjct 14289 GATCAA----------TAGCCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACC 14240 Query 26191 AAACTTATAGCCATAATT 26208 || | ||||| | ||| Sbjct 14239 GAATCTGTAGCCTTTATT 14222 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147665129228320