Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq16707 598 5e-166 seq647 269 3e-67 seq24083 161 1e-34 seq20 161 1e-34 seq574 159 4e-34 seq6733 150 2e-31 seq6008 138 1e-27 seq10199 102 1e-16 >seq16707 Length=103149 Score = 598 bits (662), Expect = 5e-166 Identities = 729/990 (74%), Gaps = 8/990 (1%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | | Sbjct 23067 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 23008 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||||||||| ||||| |||| Sbjct 23007 TGATCCCTACCTTATTAACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTC 22948 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||||||||||||||| || || ||||||||||| | || || ||||| | Sbjct 22947 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATA 22888 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | ||||||||||| || | |||| ||| || || ||| | ||||| || || || | Sbjct 22887 TTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCT 22828 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| || ||||||| ||||| |||||||| ||||||| | || | || Sbjct 22827 GGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTC 22768 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | |||||| | | || | ||| | | | |||||| |||||||||| || || Sbjct 22767 TACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 22711 Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || |||||||||||||| ||||||||| || || || || | ||||| | Sbjct 22710 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 22651 Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 |||| ||| | |||| ||| | |||||||| ||||||||||| |||||| | || | Sbjct 22650 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 22591 Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506 | ||||||||||| |||| |||| | || ||||| ||||| || || ||||||||||| | Sbjct 22590 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 22531 Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566 | || |||||| | || ||||| ||||| ||||| || || || ||| ||||||||| | Sbjct 22530 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 22471 Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626 |||| ||||| || ||| | ||| | ||||| ||||| | || ||| || | | Sbjct 22470 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 22411 Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686 |||||| || || ||||| |||||||||||||| ||||| || |||||||| || || | Sbjct 22410 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTGGCCGCTCATGGTTATTTTG 22351 Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746 | || | |||||||| ||||| || |||||||| | | | ||||||||| | | Sbjct 22350 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 22291 Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806 |||| |||||||| || | || ||| |||||| | ||| | || ||||| |||| Sbjct 22290 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 22231 Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCT 155865 | || ||||| ||||| |||||||| |||||||| || || | ||| || || | Sbjct 22230 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCA-AGGTCGCGTTATTAAT 22172 Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925 || ||||| || || | ||||| ||| ||||||||||||||| ||||| || ||||| Sbjct 22171 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 22112 Query 155926 GCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 ||||| ||||||||||| ||||| |||||| Sbjct 22111 GCTCATAACTTCCCTCTAGACCTAGCTGCT 22082 >seq647 Length=36880 Score = 269 bits (298), Expect = 3e-67 Identities = 388/546 (71%), Gaps = 1/546 (0%) Strand=Plus/Minus Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121 || ||| |||||||||||||||| ||||| ||||| ||||||||||||||| || || Sbjct 14163 TTTATTTTCGCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGCCTGTT 14104 Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181 |||| ||| || | || || ||||| || ||||| |||| || |||| ||| | Sbjct 14103 TCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTACTTCTACA 14044 Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241 || || ||| | ||||| || || || |||||||| ||| | ||||||| ||||| ||| Sbjct 14043 GCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTGATGAATGGTTATAC 13984 Query 155242 AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT 155301 ||||| ||||||| | || | || | |||||| | | || | ||| Sbjct 13983 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTGTTACATG 13924 Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361 |||||| ||||||||||| | |||| | || |||| |||| ||| ||||||||| Sbjct 13923 GGTCGTGAGTGGGAACTTAGCTTCCGTTTGGGTATGCAACCTTTGATTGTTGTTGCATAT 13864 Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421 || || | || | ||||| ||||| ||| | | || || | ||| |||| | Sbjct 13863 TCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGT 13804 Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || ||| ||| |||||| | || |||||||||||||| |||| ||| |||| |||| Sbjct 13803 TTTTCTAATGGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTACTCCAT 13744 Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG-GTGTGTTCGG 155540 || || ||||| |||||||||||| | || |||||| | || |||| | | || ||||| Sbjct 13743 GCTGAGCACAACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTATTCGG 13684 Query 155541 TGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAAC 155600 || || | ||| ||||||||| ||||| ||||| || ||| | ||| | ||||| Sbjct 13683 CGGCTCCCCATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAAC 13624 Query 155601 TACTGA 155606 || || Sbjct 13623 CACAGA 13618 >seq24083 Length=1989 Score = 161 bits (178), Expect = 1e-34 Identities = 184/246 (75%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 155713 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772 || |||||||| | | | || |||||||| ||||| |||||||| || | |||||| Sbjct 722 TTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 781 Query 155773 GCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 155832 |||||| | ||| | || ||||| |||||||| || |||||||| |||||||| Sbjct 782 TTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 841 Query 155833 TCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGC 155889 | |||||| || |||| || || || ||| ||||| || || ||||||| Sbjct 842 TATGTAGTTGA---TAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGT 898 Query 155890 GCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTT 155949 ||| ||||||||||||||| ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 899 GCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 958 Query 155950 GCTGCT 155955 |||||| Sbjct 959 GCTGCT 964 >seq20 Length=236725 Score = 161 bits (178), Expect = 1e-34 Identities = 184/246 (75%), Gaps = 6/246 (2%) Strand=Plus/Plus Query 155713 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772 || |||||||| | | | || |||||||| ||||| |||||||| || | |||||| Sbjct 78393 TTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 78452 Query 155773 GCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 155832 |||||| | ||| | || ||||| |||||||| || |||||||| |||||||| Sbjct 78453 TTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 78512 Query 155833 TCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGC 155889 | |||||| || |||| || || || ||| ||||| || || ||||||| Sbjct 78513 TTTGTAGTTGA---TAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGT 78569 Query 155890 GCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTT 155949 ||| ||||||||||||||| ||||| || ||||| ||||| ||||||||||| ||||| Sbjct 78570 GCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 78629 Query 155950 GCTGCT 155955 |||||| Sbjct 78630 GCTGCT 78635 >seq574 Length=41708 Score = 159 bits (176), Expect = 4e-34 Identities = 170/223 (76%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 155734 CACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCA 155793 || |||||||| ||||| |||||||| || | |||||| |||||| | ||| | Sbjct 2272 CATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGC 2331 Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT--- 155850 || ||||| |||||||| || |||||||| |||||||| |||||||| || |||| Sbjct 2332 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA---TAGTCAA 2388 Query 155851 GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTA 155910 || || || ||| ||||| || || ||||||| ||| ||||||||||||||| Sbjct 2389 GGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTT 2448 Query 155911 ATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTG 155953 ||||| || ||||| ||||| ||||||||||| ||||| |||| Sbjct 2449 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTG 2491 >seq6733 Length=89479 Score = 150 bits (166), Expect = 2e-31 Identities = 178/240 (74%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 155015 GGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCT 155074 |||| |||||| | ||||||||| | | | | || || | || ||| |||||| Sbjct 8780 GGTTTGGTGTTTTGATGATCCCTACCTTATTAACCGCAACTTCTGTATTTATTATCGCCT 8839 Query 155075 TCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAA 155134 |||||||||| ||||| ||||| |||||||| |||||||| || || |||| ||| || Sbjct 8840 TCATTGCTGCTCCTCCAGTAGATATTGATGGGATTCGTGAGCCTGTTTCTGGATCTCTAC 8899 Query 155135 TGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCC 155194 | ||||| ||||| || ||||| ||||| || | |||| ||| || || ||| | | Sbjct 8900 TTTATGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGC 8959 Query 155195 ACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTT 155254 |||| || || || | |||||| ||| | ||||||| |||| || ||| |||||||||| Sbjct 8960 ACTTTTACCCAATCT-GGAAGCGGCATCCGTTGATGAATGGTGGTCCAACGGTGGTCCTT 9018 >seq6008 Length=80333 Score = 138 bits (152), Expect = 1e-27 Identities = 162/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 155741 TCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGG 155800 |||| ||||| |||||||| || | |||||| |||||| | ||| | || |||| Sbjct 50677 TCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGG 50618 Query 155801 CATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAG 155857 | |||||||| || |||||||| |||||||| | |||||| | |||| || | Sbjct 50617 CTTTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGG---TAGTCAAGGCCGTG 50561 Query 155858 TCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACG 155917 | || ||| ||||| || || ||||||| ||| |||||||||| |||| |||| | Sbjct 50560 TAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGTAAGTTGTGCATG 50501 Query 155918 AGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 | ||||| ||||| ||||||||||| ||||| |||||| Sbjct 50500 AACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 50463 >seq10199 Length=21994 Score = 102 bits (112), Expect = 1e-16 Identities = 193/287 (67%), Gaps = 28/287 (10%) Strand=Plus/Plus Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685 || |||| ||||| ||||| |||||||||||||| || || ||||||||||| || | Sbjct 14228 GGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGCTATTG- 14286 Query 155686 GGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 155745 |||||||| ||||| ||||||||||| | | || |||||||| Sbjct 14287 ---------ATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTCTTCCTA 14337 Query 155746 GCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTC 155805 |||| |||||||| || | |||||| |||||| | ||| | || ||||| ||| Sbjct 14338 ACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 14397 Query 155806 AACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATC 155862 ||||| || ||| || |||||||| || |||| || || || Sbjct 14398 AACCTAAATGGT------------CAATCTGTAGTTGA---TAGTCAAGGCCGTGTAATT 14442 Query 155863 CCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGT 155909 || ||||| || || ||||||| ||| ||||||||| ||||| Sbjct 14443 AACACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATCGAAGT 14489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584639857732760