Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_020875.1
Length=182801
Score E
Sequences producing significant alignments: (Bits) Value
seq16707 598 5e-166
seq647 269 3e-67
seq24083 161 1e-34
seq20 161 1e-34
seq574 159 4e-34
seq6733 150 2e-31
seq6008 138 1e-27
seq10199 102 1e-16
>seq16707
Length=103149
Score = 598 bits (662), Expect = 5e-166
Identities = 729/990 (74%), Gaps = 8/990 (1%)
Strand=Plus/Minus
Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029
||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | |
Sbjct 23067 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 23008
Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089
|||||||| | | | | || || | || ||| |||||||||| ||||| ||||
Sbjct 23007 TGATCCCTACCTTATTAACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTC 22948
Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149
| ||||| ||||||||||||||||| || || ||||||||||| | || || ||||| |
Sbjct 22947 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATA 22888
Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209
| ||||||||||| || | |||| ||| || || ||| | ||||| || || || |
Sbjct 22887 TTATCTCTGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCACTTTTACCCAATCT 22828
Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269
||||||| ||| || ||||||| ||||| |||||||| ||||||| | || | ||
Sbjct 22827 GGGAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTC 22768
Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326
| |||||| | | || | ||| | | | |||||| |||||||||| || ||
Sbjct 22767 TACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCC 22711
Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386
|||| || |||||||||||||| ||||||||| || || || || | ||||| |
Sbjct 22710 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 22651
Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446
|||| ||| | |||| ||| | |||||||| ||||||||||| |||||| | || |
Sbjct 22650 CTGTTTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAA 22591
Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506
| ||||||||||| |||| |||| | || ||||| ||||| || || ||||||||||| |
Sbjct 22590 TATCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATC 22531
Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566
| || |||||| | || ||||| ||||| ||||| || || || ||| ||||||||| |
Sbjct 22530 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATG 22471
Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626
|||| ||||| || ||| | ||| | ||||| ||||| | || ||| || | |
Sbjct 22470 GTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGG 22411
Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686
|||||| || || ||||| |||||||||||||| ||||| || |||||||| || || |
Sbjct 22410 GTTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTGGCCGCTCATGGTTATTTTG 22351
Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746
| || | |||||||| ||||| || |||||||| | | | ||||||||| | |
Sbjct 22350 GCCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGG 22291
Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806
|||| |||||||| || | || ||| |||||| | ||| | || ||||| ||||
Sbjct 22290 CTGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCA 22231
Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGA-CGCTAGTGGTAAAGTCATCCCT 155865
| || ||||| ||||| |||||||| |||||||| || || | ||| || || |
Sbjct 22230 ATCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCA-AGGTCGCGTTATTAAT 22172
Query 155866 ACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAAC 155925
|| ||||| || || | ||||| ||| ||||||||||||||| ||||| || |||||
Sbjct 22171 ACTTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAAT 22112
Query 155926 GCTCACAACTTCCCTCTTGACCTTGCTGCT 155955
||||| ||||||||||| ||||| ||||||
Sbjct 22111 GCTCATAACTTCCCTCTAGACCTAGCTGCT 22082
>seq647
Length=36880
Score = 269 bits (298), Expect = 3e-67
Identities = 388/546 (71%), Gaps = 1/546 (0%)
Strand=Plus/Minus
Query 155062 TTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTC 155121
|| ||| |||||||||||||||| ||||| ||||| ||||||||||||||| || ||
Sbjct 14163 TTTATTTTCGCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGCCTGTT 14104
Query 155122 GCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAAC 155181
|||| ||| || | || || ||||| || ||||| |||| || |||| ||| |
Sbjct 14103 TCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTACTTCTACA 14044
Query 155182 GCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAC 155241
|| || ||| | ||||| || || || |||||||| ||| | ||||||| ||||| |||
Sbjct 14043 GCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTGATGAATGGTTATAC 13984
Query 155242 AATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT 155301
||||| ||||||| | || | || | |||||| | | || | |||
Sbjct 13983 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTGTTACATG 13924
Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361
|||||| ||||||||||| | |||| | || |||| |||| ||| |||||||||
Sbjct 13923 GGTCGTGAGTGGGAACTTAGCTTCCGTTTGGGTATGCAACCTTTGATTGTTGTTGCATAT 13864
Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421
|| || | || | ||||| ||||| ||| | | || || | ||| |||| |
Sbjct 13863 TCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAGT 13804
Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481
|| ||| ||| |||||| | || |||||||||||||| |||| ||| |||| ||||
Sbjct 13803 TTTTCTAATGGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTACTCCAT 13744
Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAG-GTGTGTTCGG 155540
|| || ||||| |||||||||||| | || |||||| | || |||| | | || |||||
Sbjct 13743 GCTGAGCACAACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTATTCGG 13684
Query 155541 TGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAAC 155600
|| || | ||| ||||||||| ||||| ||||| || ||| | ||| | |||||
Sbjct 13683 CGGCTCCCCATTCAGTGCTATGCATGGTTCTTTGGTAACTTCTAGTTTGATCAGGGAAAC 13624
Query 155601 TACTGA 155606
|| ||
Sbjct 13623 CACAGA 13618
>seq24083
Length=1989
Score = 161 bits (178), Expect = 1e-34
Identities = 184/246 (75%), Gaps = 6/246 (2%)
Strand=Plus/Plus
Query 155713 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772
|| |||||||| | | | || |||||||| ||||| |||||||| || | ||||||
Sbjct 722 TTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 781
Query 155773 GCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 155832
|||||| | ||| | || ||||| |||||||| || |||||||| ||||||||
Sbjct 782 TTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 841
Query 155833 TCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGC 155889
| |||||| || |||| || || || ||| ||||| || || |||||||
Sbjct 842 TATGTAGTTGA---TAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGT 898
Query 155890 GCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTT 155949
||| ||||||||||||||| ||||| || ||||| ||||| ||||||||||| |||||
Sbjct 899 GCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 958
Query 155950 GCTGCT 155955
||||||
Sbjct 959 GCTGCT 964
>seq20
Length=236725
Score = 161 bits (178), Expect = 1e-34
Identities = 184/246 (75%), Gaps = 6/246 (2%)
Strand=Plus/Plus
Query 155713 TTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGG 155772
|| |||||||| | | | || |||||||| ||||| |||||||| || | ||||||
Sbjct 78393 TTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGG 78452
Query 155773 GCAACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAG 155832
|||||| | ||| | || ||||| |||||||| || |||||||| ||||||||
Sbjct 78453 TTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAA 78512
Query 155833 TCTGTAGTAGACGCTAGT---GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGC 155889
| |||||| || |||| || || || ||| ||||| || || |||||||
Sbjct 78513 TTTGTAGTTGA---TAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGT 78569
Query 155890 GCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTT 155949
||| ||||||||||||||| ||||| || ||||| ||||| ||||||||||| |||||
Sbjct 78570 GCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTA 78629
Query 155950 GCTGCT 155955
||||||
Sbjct 78630 GCTGCT 78635
>seq574
Length=41708
Score = 159 bits (176), Expect = 4e-34
Identities = 170/223 (76%), Gaps = 6/223 (3%)
Strand=Plus/Plus
Query 155734 CACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCA 155793
|| |||||||| ||||| |||||||| || | |||||| |||||| | ||| |
Sbjct 2272 CATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGC 2331
Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT--- 155850
|| ||||| |||||||| || |||||||| |||||||| |||||||| || ||||
Sbjct 2332 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGA---TAGTCAA 2388
Query 155851 GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTA 155910
|| || || ||| ||||| || || ||||||| ||| |||||||||||||||
Sbjct 2389 GGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTT 2448
Query 155911 ATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTG 155953
||||| || ||||| ||||| ||||||||||| ||||| ||||
Sbjct 2449 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCTG 2491
>seq6733
Length=89479
Score = 150 bits (166), Expect = 2e-31
Identities = 178/240 (74%), Gaps = 1/240 (0%)
Strand=Plus/Plus
Query 155015 GGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCT 155074
|||| |||||| | ||||||||| | | | | || || | || ||| ||||||
Sbjct 8780 GGTTTGGTGTTTTGATGATCCCTACCTTATTAACCGCAACTTCTGTATTTATTATCGCCT 8839
Query 155075 TCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAA 155134
|||||||||| ||||| ||||| |||||||| |||||||| || || |||| ||| ||
Sbjct 8840 TCATTGCTGCTCCTCCAGTAGATATTGATGGGATTCGTGAGCCTGTTTCTGGATCTCTAC 8899
Query 155135 TGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCC 155194
| ||||| ||||| || ||||| ||||| || | |||| ||| || || ||| | |
Sbjct 8900 TTTATGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGC 8959
Query 155195 ACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTT 155254
|||| || || || | |||||| ||| | ||||||| |||| || ||| ||||||||||
Sbjct 8960 ACTTTTACCCAATCT-GGAAGCGGCATCCGTTGATGAATGGTGGTCCAACGGTGGTCCTT 9018
>seq6008
Length=80333
Score = 138 bits (152), Expect = 1e-27
Identities = 162/218 (74%), Gaps = 6/218 (3%)
Strand=Plus/Minus
Query 155741 TCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGG 155800
|||| ||||| |||||||| || | |||||| |||||| | ||| | || ||||
Sbjct 50677 TCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGG 50618
Query 155801 CATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAG 155857
| |||||||| || |||||||| |||||||| | |||||| | |||| || |
Sbjct 50617 CTTTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGG---TAGTCAAGGCCGTG 50561
Query 155858 TCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACG 155917
| || ||| ||||| || || ||||||| ||| |||||||||| |||| |||| |
Sbjct 50560 TAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGTAAGTTGTGCATG 50501
Query 155918 AGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955
| ||||| ||||| ||||||||||| ||||| ||||||
Sbjct 50500 AACGTAATGCTCATAACTTCCCTCTAGACCTAGCTGCT 50463
>seq10199
Length=21994
Score = 102 bits (112), Expect = 1e-16
Identities = 193/287 (67%), Gaps = 28/287 (10%)
Strand=Plus/Plus
Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685
|| |||| ||||| ||||| |||||||||||||| || || ||||||||||| || |
Sbjct 14228 GGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGCTATTG- 14286
Query 155686 GGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 155745
|||||||| ||||| ||||||||||| | | || ||||||||
Sbjct 14287 ---------ATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTCTTCCTA 14337
Query 155746 GCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTC 155805
|||| |||||||| || | |||||| |||||| | ||| | || ||||| |||
Sbjct 14338 ACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 14397
Query 155806 AACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATC 155862
||||| || ||| || |||||||| || |||| || || ||
Sbjct 14398 AACCTAAATGGT------------CAATCTGTAGTTGA---TAGTCAAGGCCGTGTAATT 14442
Query 155863 CCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGT 155909
|| ||||| || || ||||||| ||| ||||||||| |||||
Sbjct 14443 AACACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATCGAAGT 14489
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 584639857732760
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