Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq16707 499 9e-137 seq647 219 1e-52 seq6733 145 2e-30 seq574 123 7e-24 seq24083 120 9e-23 seq20 120 9e-23 seq6008 98.7 3e-16 >seq16707 Length=103149 Score = 499 bits (552), Expect = 9e-137 Identities = 715/994 (72%), Gaps = 14/994 (1%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 22082 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 22141 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCG-TCTACTA 40647 | | | ||| | | ||||||||||||| ||| || ||| || || || |||| Sbjct 22142 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACGCGACC-TTGGCTATCAACTA 22200 Query 40648 CTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGG 40707 | || ||||| || || || || || || || |||||||||||| ||||| | | | Sbjct 22201 CAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGCAG 22260 Query 40708 TAAGCCATATGCCAATAACCGGGAAAGCA-CCAAGAAAGAAGTGTAGCGCACGGCTATTG 40766 | | ||| || || | || || ||||| ||||||| |||||||| | ||| ||| Sbjct 22261 TGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAA-GAAGTGTAAAGAACGAGAGTTG 22319 Query 40767 TTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTA 40826 || || ||||||||| || |||| || ||||| ||||| || || || || || ||| Sbjct 22320 TTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATTA 22379 Query 40827 TAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGTGGTC 40886 ||||| || | || |||||||| | || || | || ||||| |||| ||||| Sbjct 22380 TAAGTTTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGTT 22439 Query 40887 TCCCGAATGA---TTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACCA 40943 |||| || | | |||| || ||||| || ||||||||| || | | ||| Sbjct 22440 TCCCTGATCAAACTAGAGGT--TACCAAGGAA-CCATGCATAGCACTGAATAGGGAACCG 22496 Query 40944 CCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCT 41003 || || || || || || || | ||| || ||||| ||||| || ||||| || ||||| Sbjct 22497 CCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCC 22556 Query 41004 TGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAA 41063 ||||| |||| ||| |||||||| || ||| ||||||||||||||||||||||||||| Sbjct 22557 TGGAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAA 22616 Query 41064 GAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGTG 41123 || ||||| | || |||| ||||| ||||| ||| |||| | ||||||| Sbjct 22617 CTTCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAA 22676 Query 41124 TATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCA 41183 ||||| ||| ||||| || | |||||| || | | | |||||||||| | ||| Sbjct 22677 TATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCC 22736 Query 41184 GCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTG 41243 || ||||| || | ||| ||||| | ||||| || | ||| || ||||| ||| Sbjct 22737 ATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTG 22796 Query 41244 TATAGCCACTCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGC 41302 |||| ||| || || | | |||| ||||||||||||||||| || || | || || || Sbjct 22797 TATAACCATTCATCAACAGATGCC-GCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGC 22855 Query 41303 GTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGA 41362 ||| | |||| | || ||||| ||||||||||| ||||| | ||| || || || Sbjct 22856 TGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGA 22915 Query 41363 AACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 ||| |||||||| || ||||| |||||||| || || || ||||| |||||||| || || Sbjct 22916 AACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAA 22975 Query 41423 -ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATA 41481 ||| | || || |||| ||| | || ||||| | ||||| ||||| || | ||| | Sbjct 22976 TACA-GAAGTTGCGGTTAATAAGGTAGGGATCATCAAAACACCGAACCATCCGATGTAAA 23034 Query 41482 GGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | ||||| ||||||||||| | |||||| || || Sbjct 23035 GACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 23068 >seq647 Length=36880 Score = 219 bits (242), Expect = 1e-52 Identities = 325/455 (71%), Gaps = 12/455 (3%) Strand=Plus/Plus Query 40967 CATATGGAATGGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAA 41026 ||| || |||| |||||| || |||||||| || || |||| || | |||||||||||| Sbjct 13708 CATGTGAAATGTGTGCATAAGGATGTTGTGCTCAGCATGGAGTACGATCATGAAGTTGAA 13767 Query 41027 TGTTCCACTGATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAAC 41086 || ||| |||||||| ||||||||||| ||| ||| || | ||| | ||| || | Sbjct 13768 AGTACCAGAGATTCCTACAGGCATACCATTAGAAAAACTTCCTTAACCAATTGGGTAGAT 13827 Query 41087 TAAGAATACAGCTAGAGCTGCTG--ACAATGGAGCTGTGTATGCCACAAATATCCATGGT 41144 ||||| ||||| ||| |||| |||| |||||| ||||| |||| ||| | ||| Sbjct 13828 CAAGAAAACAGCAGTAGCAGCTGCAACAA--GAGCTGAATATGCAACAACAATCAAAGGT 13885 Query 41145 CTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATT 41204 |||||| | | | | ||||||||||| | ||| ||| |||| || | Sbjct 13886 TGCATACCCAAACGGAAGCTAAGTTCCCACTCACGACCCATGTAACACACTACACCAAGC 13945 Query 41205 AAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCA-GTGT 41263 || ||||| | ||||| || | ||| || ||||| ||||||| ||| || || | | | Sbjct 13946 AAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATTGTATAACCATTCATCAATGGAT 14005 Query 41264 GCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGG---AACGAC 41320 ||| ||||||||||| ||||| || || | || || || |||| | || || ||| Sbjct 14006 GCC-GCTTCCCAGATCGGGTAAAAGTGCAAACCTATAGCTGTAGAAGTAGGATTAATGAC 14064 Query 41321 AGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCC 41380 | || || ||||||||||| ||||| | || || || ||||| |||||||| || || Sbjct 14065 A---CCTGAGATAATATTGTTTCCGTAAAGTAGAGATCCAGAAACAGGCTCACGAATACC 14121 Query 41381 ATCTATATCTACAGGCGGTGCTGCGATAAAGGCGA 41415 ||| |||||| || || || || || ||||||| Sbjct 14122 ATCAGCATCTACTGGAGGAGCAGCAATGAAGGCGA 14156 >seq6733 Length=89479 Score = 145 bits (160), Expect = 2e-30 Identities = 231/325 (71%), Gaps = 5/325 (2%) Strand=Plus/Minus Query 41193 GCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCAC 41252 ||||| || | ||| ||||| | ||||| | | ||| || || |||||| | ||| Sbjct 9055 GCTACACCAAGTAAGAAGTGTAGAACAATTATCTCATAAGGACCACCGTTGGACCACCAT 8996 Query 41253 TCGTCCAGTG-TGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCT 41311 || || | | ||||| ||||| |||||||||| || || | || || || ||| | Sbjct 8995 TCATCAACGGATGCCG-CTTCC-AGATTGGGTAAAAGTGCAAACCTATAGCTGCAGAAGT 8938 Query 41312 CGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTC 41371 |||| | || || || ||||||||||| || || | || || || ||||| ||||| Sbjct 8937 AGGAATAATGGCACCTGAGATAATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTC 8878 Query 41372 ACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGG 41430 ||| || ||||| |||||||| || || || || || |||||||| || || ||| | | Sbjct 8877 ACGAATCCCATCAATATCTACTGGAGGAGCAGCAATGAAGGCGATAATAAATACA-GAAG 8819 Query 41431 TAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGT 41490 | || |||| ||| | || ||||| | |||||||||| || | ||| || |||| | Sbjct 8818 TTGCGGTTAATAAGGTAGGGATCATCAAAACACCAAACCGTCCAATGTAAAGATGGTTTT 8759 Query 41491 CGGTGCTAGTGACCCAGTTACAAAA 41515 | ||| |||| | | ||||||| || Sbjct 8758 CAGTGTTAGTTATCTAGTTACAGAA 8734 >seq574 Length=41708 Score = 123 bits (136), Expect = 7e-24 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 40532 AGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAGACT 40591 ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| ||| | Sbjct 2490 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATT 2431 Query 40592 CTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTACTGA 40651 | ||||| | ||||||||| ||| ||| || || | | || ||||| || Sbjct 2430 AGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTACAGA 2371 Query 40652 CTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAG 40711 ||||| || || |||||||| ||||| ||||||||||| ||||| | | || | Sbjct 2370 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAA 2311 Query 40712 CCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTA 40752 ||| || || | || || ||||| | || ||||| |||| Sbjct 2310 CCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTA 2270 >seq24083 Length=1989 Score = 120 bits (132), Expect = 9e-23 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 964 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 905 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | | ||||| | ||||||||| ||| ||| || || | | || ||||| Sbjct 904 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTAC 845 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 | ||||| || || |||||||| ||||| ||||||||||| ||||| | | || Sbjct 844 ATATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 785 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTA 40752 | ||| || || | || || ||||| | || ||||| |||| Sbjct 784 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTA 741 >seq20 Length=236725 Score = 120 bits (132), Expect = 9e-23 Identities = 161/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||||| || Sbjct 78635 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 78576 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | | ||||| | ||||||||| ||| ||| || || | | || ||||| Sbjct 78575 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTATCAACTAC 78516 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGT 40708 | ||||| || || |||||||| ||||| ||||||||||| ||||| | | || Sbjct 78515 AAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGT 78456 Query 40709 AAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTA 40752 | ||| || || | || || ||||| | || ||||| |||| Sbjct 78455 GAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTA 78412 >seq6008 Length=80333 Score = 98.7 bits (108), Expect = 3e-16 Identities = 119/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| ||||| || |||| |||| |||||| || Sbjct 50463 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAG 50522 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | | ||||| | ||||||||| ||| ||| || || | | | ||||| Sbjct 50523 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAATTACACGGCCTTGACTACCAACTAC 50582 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGT 40690 | ||||| || || |||||||| ||||| ||||||||||| Sbjct 50583 AAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 50624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143656801522014