Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq16707 572 2e-158 seq647 271 9e-68 seq24083 158 1e-33 seq20 158 1e-33 seq574 156 5e-33 seq6008 138 1e-27 seq10199 107 2e-18 seq4124 84.2 2e-11 >seq16707 Length=103149 Score = 572 bits (634), Expect = 2e-158 Identities = 699/951 (74%), Gaps = 12/951 (1%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 22082 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 22141 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||| | ||| || ||||||||| ||| || | |||| | ||||| Sbjct 22142 ATTAGCACGGTTGATGATATCAGCCCAAGTATTAATAACG---CGACCTTGGCTATCAAC 22198 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || ||||||||||| ||||| ||||| || ||||| |||||||| | ||| | || Sbjct 22199 TACAGATTGGTTGAAATTGAATCCGTTTAGATTGAAAGCCATAGTACTAATACCTAAAGC 22258 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 ||||||||| || | || ||||| | ||||| | ||||||||| | | | ||||| Sbjct 22259 AGTGAACCAAATCCCTACTACAGGCCAAGCAGCCAAGAAGAAGTGTAAAGAACGAGAGTT 22318 Query 67595 GTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTT 67654 ||| ||| ||||| |||||||| || || || || || |||||||| || ||||| || Sbjct 22319 GTTAAAACTAGCATATTGGAAGATTAATCGGCCAAAATAACCATGAGCGGCCACAATATT 22378 Query 67655 GTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCAGTAGT 67714 ||||| ||||| ||||| || || ||||||| | || || || | ||||| || Sbjct 22379 ATAAGTTTCTTCCTCTTGACCAAATCTGTAACCCTCATTAGCAGATTCGTTTTCAGTGGT 22438 Query 67715 TTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACC 67774 ||| ||||| | | ||| || || | ||||| ||||||||||| || || ||||| || Sbjct 22439 TTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAACCGCC 22498 Query 67775 GAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTG 67834 ||||||||| ||||| || | ||| || ||||| |||||||||||||| |||||||| || Sbjct 22499 GAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGGATGTTATGCTCTGCCTG 22558 Query 67835 GAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGA 67894 ||| || | ||| |||| ||||||||||| || || | |||||| | ||||||||| Sbjct 22559 GAATACAATCATAAAGTTGAAAGTACCAGATATTCCTAAAGGCATACCATCAGAGAAACT 22618 Query 67895 ACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTA 67954 |||||||| | ||| || | |||||| ||||| || || | || ||||| || || Sbjct 22619 TCCTTGACCAATAGGGTAAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATA 22678 Query 67955 TGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC--- 68011 ||| ||| ||||||||||||||||| |||||| || |||||||||| |||||| Sbjct 22679 TGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTCAGTTCCCACTCACGACCCAT 22738 Query 68012 ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATT 68071 | | | ||| | || | | |||||| | || | || | |||| || ||||| Sbjct 22739 ATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACCGCCATT 22795 Query 68072 ATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGC 68131 || ||||| ||||| | || ||| ||||||||||| || || ||||| | ||| || || Sbjct 22796 GTATAACCATTCATCAACAGATGCCGCTTCCCAGATTGGGTAAAAGTGCAAACCTATAGC 22855 Query 68132 GTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGC 68191 ||| |||||| || |||||||| || || ||||| ||||| | | ||||| | Sbjct 22856 TGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCGTAAAGTAAAGAACCAGA 22915 Query 68192 AACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA 68251 |||||| || | |||||||| ||||| |||||||| || || ||||| || || || || Sbjct 22916 AACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAGGCGATAATAAA 22975 Query 68252 GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || | ||| | | ||| ||| |||||||| ||||||||||| || Sbjct 22976 TACAGAAGTTGCGGTTAATAAGGTAGGGATCATCAAAACACCGAACCATCC 23026 >seq647 Length=36880 Score = 271 bits (300), Expect = 9e-68 Identities = 383/537 (71%), Gaps = 1/537 (0%) Strand=Plus/Plus Query 67707 TCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGT 67766 || || ||||| ||||| | | |||||| || | |||||| ||||||||||| || | Sbjct 13618 TCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAAGAACCATGCATAGCACTGAATGGG 13677 Query 67767 GAACCACCGAATACAC-CTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 || || |||||||| | | |||| || | ||| || |||| |||||||||||||||||| Sbjct 13678 GAGCCGCCGAATACCCACAGCTATACCTAACATGTGAAATGTGTGCATAAGGATGTTGTG 13737 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| || |||| |||| |||| |||| ||||||||||| || || | |||||| | | Sbjct 13738 CTCAGCATGGAGTACGATCATGAAGTTGAAAGTACCAGAGATTCCTACAGGCATACCATT 13797 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945 ||| ||| |||| ||| | || |||| |||||| ||||| || || | || | Sbjct 13798 AGAAAAACTTCCTTAACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAAG 13857 Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005 ||| || ||||| ||| ||| |||| ||||||| | |||| | ||||||||||| Sbjct 13858 AGCTGAATATGCAACAACAATCAAAGGTTGCATACCCAAACGGAAGCTAAGTTCCCACTC 13917 Query 68006 ACGACCACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCC 68065 |||||| ||| | || | | |||||| | || | || | |||| || Sbjct 13918 ACGACCCATGTAACACACTACACCAAGCAAGAAGTGTAGAACAATTAGCTCATAAGGACC 13977 Query 68066 ACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACC 68125 ||||| || ||||| ||||| | | ||| ||||||||||| || || ||||| | ||| Sbjct 13978 GCCATTGTATAACCATTCATCAATGGATGCCGCTTCCCAGATCGGGTAAAAGTGCAAACC 14037 Query 68126 GATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGA 68185 || || | ||| ||||| || |||| || || || ||||| ||||| | || || Sbjct 14038 TATAGCTGTAGAAGTAGGATTAATGACACCTGAGATAATATTGTTTCCGTAAAGTAGAGA 14097 Query 68186 ACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242 || | |||||| || | |||||||| ||| |||||||| || |||||||| || Sbjct 14098 TCCAGAAACAGGCTCACGAATACCATCAGCATCTACTGGAGGAGCAGCAATGAAGGC 14154 >seq24083 Length=1989 Score = 158 bits (174), Expect = 1e-33 Identities = 184/247 (74%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 964 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 905 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| ||| || ||||| ||| ||| || || ||| ||||| Sbjct 904 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAATTAC---ACGGCCTTGACTATCAAC 848 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || |||||||||| |||||||| || |||||||| |||||||| | ||| | || Sbjct 847 TACATATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 788 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || ||||| | ||||| |||||||| || | | | ||||| Sbjct 787 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTT 728 Query 67595 GTTGAAA 67601 ||| ||| Sbjct 727 GTTCAAA 721 >seq20 Length=236725 Score = 158 bits (174), Expect = 1e-33 Identities = 184/247 (74%), Gaps = 6/247 (2%) Strand=Plus/Minus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 78635 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAG 78576 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAAC 67474 || | ||||| ||| || ||||| ||| ||| || || ||| ||||| Sbjct 78575 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAATTAC---ACGGCCTTGACTATCAAC 78519 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || |||||||||| |||||||| || |||||||| |||||||| | ||| | || Sbjct 78518 TACAAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 78459 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTT 67594 |||||||||||| | || ||||| | ||||| |||||||| || | | | ||||| Sbjct 78458 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAAGAACGAGAGTT 78399 Query 67595 GTTGAAA 67601 ||| ||| Sbjct 78398 GTTCAAA 78392 >seq574 Length=41708 Score = 156 bits (172), Expect = 5e-33 Identities = 169/223 (76%), Gaps = 6/223 (3%) Strand=Plus/Minus Query 67360 CAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAGTC 67419 |||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| ||||| Sbjct 2491 CAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGAT 2432 Query 67420 CTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCG---TCAACGA 67476 || | ||||| ||| || ||||| ||| ||| || || ||| ||||| | Sbjct 2431 TAGCACGGTTAATGATATCAGCCCAGGTATTAATTAC---ACGGCCTTGACTATCAACTA 2375 Query 67477 CGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAG 67536 | ||||||||||| |||||||| || |||||||| |||||||| | ||| | |||| Sbjct 2374 CAGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAG 2315 Query 67537 TGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTG 67579 |||||||||| | || ||||| | ||||| |||||||| || Sbjct 2314 TGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATG 2272 >seq6008 Length=80333 Score = 138 bits (152), Expect = 1e-27 Identities = 163/218 (75%), Gaps = 6/218 (3%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 |||||| ||||| ||||||||||| ||||| ||||| || |||| ||||| ||| ||||| Sbjct 50463 AGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCACAACTTACATACCAAG 50522 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT-GCGT--CAAC 67474 || | ||||| ||| || ||||| ||| ||| || || ||| | | |||| Sbjct 50523 ATTAGCACGGTTAATGATATCAGCCCAGGTATTAATTAC---ACGGCCTTGACTACCAAC 50579 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGC 67534 || |||||||||| |||||||| || |||||||| |||||||| | ||| | || Sbjct 50580 TACAAATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGC 50639 Query 67535 AGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGA 67572 |||||||||||| | || ||||| | ||||| |||| Sbjct 50640 AGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGA 50677 >seq10199 Length=21994 Score = 107 bits (118), Expect = 2e-18 Identities = 138/192 (72%), Gaps = 10/192 (5%) Strand=Plus/Minus Query 67496 ACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGATGCAGACCAC 67555 ||| || |||||||| |||||||| | ||| | |||||||||||||| | || || Sbjct 14409 ACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATACCTACTAC 14350 Query 67556 AGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGCATACTGGAA 67615 ||| | |||| |||||||| || | | |||||||||||| ||||| ||||| Sbjct 14349 AGGCCAAGCAGTTAGGAAGAAATGTAAAGAAAGAGAGTTGTTGAAACTAGCATATTGGAA 14290 Query 67616 GATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGTCC 67675 |||||| || ||||||||||| || || || ||||| ||||| ||||| || Sbjct 14289 GATCAA----------TAGCCATGAGCAGCTACGATATTATAAGTTTCTTCCTCTTGACC 14240 Query 67676 GAACTTGTAACC 67687 ||| |||| || Sbjct 14239 GAATCTGTAGCC 14228 >seq4124 Length=71480 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 67875 GGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCT 67934 ||||| | ||||| ||| |||||||| | || |||| |||||| ||||| | || Sbjct 19121 GGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACAGCAATAGCA 19180 Query 67935 GCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAA 67994 || | || ||||| || ||||| ||| |||||| | |||||||| | |||| || | Sbjct 19181 GCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAAGTCGCATACCCAAACGGAAACTA 19240 Query 67995 AGTTCCCACTGACGAC 68010 |||||||||| | ||| Sbjct 19241 AGTTCCCACTCATGAC 19256 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566757832548360