Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq7849 104 4e-17
seq11116 96.9 6e-15
seq9252 96.9 6e-15
seq892 89.7 9e-13
seq10943 86.0 1e-11
seq2938 84.2 4e-11
seq2905 84.2 4e-11
>seq7849
Length=122270
Score = 104 bits (114), Expect = 4e-17
Identities = 117/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || || || ||||||||||| || | | ||||||||| ||||| || ||||| ||
Sbjct 79771 ATCCTCCAACTGCTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGAATACCTTCCTT 79830
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||||| || || ||| | ||| ||| ||||| || |||||| || ||||| ||
Sbjct 79831 GTCTTGGATCTTCACTTTCACATTATCAATTGTATCAGAGCTCTCAACCTCAAGAGTGAT 79890
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || ||||| || |||||||| || ||||||
Sbjct 79891 TGTCTTTCCAGTTAGGGTCTTTACAAAGATCTGCATT 79927
Score = 93.3 bits (102), Expect = 8e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
|| |||||||| || || | | ||||||||||||||| || ||||| || ||||| ||
Sbjct 80009 TGCTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGAATACCTTCCTTGTCTTGGATC 80068
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| | || | || ||| || ||||| |||||| || || || || ||||| ||
Sbjct 80069 TTCGCCTTCACGTTATCAATTGTGTCGGAGCTCTCAACCTCGAGCGTGATTGTTTTCCCA 80128
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
||||| |||||||| || || |||||
Sbjct 80129 GTTAGGGTTTTTACGAAGATCTGCAT 80154
Score = 93.3 bits (102), Expect = 8e-14
Identities = 108/146 (74%), Gaps = 0/146 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||||||||| || || | | ||| ||||| ||||| || ||||| || ||||| |||
Sbjct 80237 TGTTTTCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCTTGTCTTGAATT 80296
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || | ||| ||| ||||| || ||| || || || || || || || ||
Sbjct 80297 TTGGCCTTGACATTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGATTGTCTTGCCA 80356
Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360
||||| |||||||| || || |||||
Sbjct 80357 GTTAGGGTTTTTACGAAGATCTGCAT 80382
Score = 89.7 bits (98), Expect = 9e-13
Identities = 114/157 (73%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264
||| || ||||| || || || || || | ||||||||||| || || || || |||||
Sbjct 79543 ATCCTCCAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGTGGAATCCCCTCTTT 79602
Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324
||| || || || | || | || ||| ||||| || |||||| || || || ||
Sbjct 79603 ATCCTGAATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTCTCAACCTCGAGCGTGAT 79662
Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
|| || || ||||| ||||| ||||| |||||||||
Sbjct 79663 TGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCATT 79699
>seq11116
Length=53430
Score = 96.9 bits (106), Expect = 6e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| || | |||||||||||| || || | | ||||| || ||||||||||| |||||
Sbjct 28118 TCTTCAAGTTGTTTTCCGGCGAAGATCAGGCGTTGTTGGTCCGGAGGTATTCCCTCTTTG 28059
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || || |||| || | ||| || || || || ||||| || ||||| |||||
Sbjct 28058 TCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCTGAGGACTCCACCTCTAGGGTTATC 27999
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || ||||| ||||| || || || ||||| ||
Sbjct 27998 GTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 27961
>seq9252
Length=190322
Score = 96.9 bits (106), Expect = 6e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265
|| |||| |||||||||||| || || | | ||||| || |||||||| || |||||
Sbjct 60208 TCTTCTAGTTGTTTTCCGGCGAAGATCAGGCGTTGTTGGTCCGGAGGTATGCCCTCTTTG 60149
Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325
|| || || |||| || | ||| || || ||||| ||||| || ||||| |||||
Sbjct 60148 TCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCTAGGGTTATC 60089
Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363
|| || || |||| ||||| || || || ||||| ||
Sbjct 60088 GTCTTCCCGGTTAAGGTTTTCACGAAGATCTGCATCTT 60051
>seq892
Length=123481
Score = 89.7 bits (98), Expect = 9e-13
Identities = 109/149 (73%), Gaps = 0/149 (0%)
Strand=Plus/Plus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||||||||| || || | | ||| || || ||||| || || ||||| ||||| ||
Sbjct 88338 TGTTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATC 88397
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|||| || | ||| || || || || || ||||| ||||| ||||| || || ||
Sbjct 88398 TTGGCCTTGACATTGTCGATGGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCC 88457
Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| ||||| || || || ||||| ||
Sbjct 88458 GTTAGGGTTTTCACGAAGATCTGCATCTT 88486
>seq10943
Length=105762
Score = 86.0 bits (94), Expect = 1e-11
Identities = 160/235 (68%), Gaps = 0/235 (0%)
Strand=Plus/Minus
Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185
|||| | |||||| | | ||||| || ||||| | || | ||| || ||| ||||
Sbjct 54370 TTTAGAAACCACCACGAAGACGAAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTAT 54311
Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245
|||| | || || || || || | || || || |||||||| || ||||| ||||
Sbjct 54310 AGTCAGCCAAAGTCCTGCCGTCCTCCAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGAT 54251
Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305
| || || || || || || || || || || | || | ||| |||||||||||||
Sbjct 54250 CCGGTGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATAGTATCGGAAC 54191
Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| || || | || || || || || || | || || ||||| || |||||
Sbjct 54190 TCTCCACCTCCAATGTGATGGTCTTCCCAGTCAAGGTCTTGACAAAAATCTGCAT 54136
>seq2938
Length=28785
Score = 84.2 bits (92), Expect = 4e-11
Identities = 159/234 (68%), Gaps = 0/234 (0%)
Strand=Plus/Minus
Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186
||| | |||||| | | ||||| || ||||| | || | ||| || ||| |||||
Sbjct 11190 TTAGAAACCACCACGAAGACGAAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTATA 11131
Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246
||| | || || || ||| || | || || || ||||| || | ||||| |||||
Sbjct 11130 GTCAGCCAAGGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATC 11071
Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306
|| || || || || || || || || || | || | ||| |||||||||||||
Sbjct 11070 CGGTGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATAGTATCGGAACT 11011
Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
||| || || | || || || || || || | ||||| ||||| || |||||
Sbjct 11010 CTCCACCTCCAATGTGATGGTCTTCCCAGTCAAGGTTTTGACAAAAATCTGCAT 10957
>seq2905
Length=56485
Score = 84.2 bits (92), Expect = 4e-11
Identities = 108/149 (72%), Gaps = 0/149 (0%)
Strand=Plus/Minus
Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274
||||||||||| || || | | ||| || || ||||| || ||||| || ||||| ||
Sbjct 52680 TGTTTTCCGGCGAAGATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGAATC 52621
Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334
|| | || | ||| || || ||||| || || || ||||| || ||||| || ||
Sbjct 52620 TTTGCCTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTAATAGTCTTCCCC 52561
Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363
||||| ||||| || || || ||||| ||
Sbjct 52560 GTTAGGGTTTTCACGAAGATCTGCATCTT 52532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899353904184720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |