Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq7849 104 4e-17 seq11116 96.9 6e-15 seq9252 96.9 6e-15 seq892 89.7 9e-13 seq10943 86.0 1e-11 seq2938 84.2 4e-11 seq2905 84.2 4e-11 >seq7849 Length=122270 Score = 104 bits (114), Expect = 4e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || || || ||||||||||| || | | ||||||||| ||||| || ||||| || Sbjct 79771 ATCCTCCAACTGCTTTCCGGCAAAGATCAGACGCTGTTGATCCGGAGGAATACCTTCCTT 79830 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||||| || || ||| | ||| ||| ||||| || |||||| || ||||| || Sbjct 79831 GTCTTGGATCTTCACTTTCACATTATCAATTGTATCAGAGCTCTCAACCTCAAGAGTGAT 79890 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||| || |||||||| || |||||| Sbjct 79891 TGTCTTTCCAGTTAGGGTCTTTACAAAGATCTGCATT 79927 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || |||||||| || || | | ||||||||||||||| || ||||| || ||||| || Sbjct 80009 TGCTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGAATACCTTCCTTGTCTTGGATC 80068 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | || ||| || ||||| |||||| || || || || ||||| || Sbjct 80069 TTCGCCTTCACGTTATCAATTGTGTCGGAGCTCTCAACCTCGAGCGTGATTGTTTTCCCA 80128 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| |||||||| || || ||||| Sbjct 80129 GTTAGGGTTTTTACGAAGATCTGCAT 80154 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||||||||| || || | | ||| ||||| ||||| || ||||| || ||||| ||| Sbjct 80237 TGTTTTCCGGCGAAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCTTGTCTTGAATT 80296 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| ||| ||||| || ||| || || || || || || || || Sbjct 80297 TTGGCCTTGACATTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGATTGTCTTGCCA 80356 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| |||||||| || || ||||| Sbjct 80357 GTTAGGGTTTTTACGAAGATCTGCAT 80382 Score = 89.7 bits (98), Expect = 9e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || ||||| || || || || || | ||||||||||| || || || || ||||| Sbjct 79543 ATCCTCCAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGTGGAATCCCCTCTTT 79602 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 ||| || || || | || | || ||| ||||| || |||||| || || || || Sbjct 79603 ATCCTGAATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTCTCAACCTCGAGCGTGAT 79662 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || ||||| ||||| ||||| ||||||||| Sbjct 79663 TGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCATT 79699 >seq11116 Length=53430 Score = 96.9 bits (106), Expect = 6e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||| || || | | ||||| || ||||||||||| ||||| Sbjct 28118 TCTTCAAGTTGTTTTCCGGCGAAGATCAGGCGTTGTTGGTCCGGAGGTATTCCCTCTTTG 28059 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | ||| || || || || ||||| || ||||| ||||| Sbjct 28058 TCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCTGAGGACTCCACCTCTAGGGTTATC 27999 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || ||||| ||||| || || || ||||| || Sbjct 27998 GTCTTCCCGGTTAGGGTTTTCACGAAGATCTGCATCTT 27961 >seq9252 Length=190322 Score = 96.9 bits (106), Expect = 6e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||| |||||||||||| || || | | ||||| || |||||||| || ||||| Sbjct 60208 TCTTCTAGTTGTTTTCCGGCGAAGATCAGGCGTTGTTGGTCCGGAGGTATGCCCTCTTTG 60149 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || |||| || | ||| || || ||||| ||||| || ||||| ||||| Sbjct 60148 TCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCTAGGGTTATC 60089 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || || |||| ||||| || || || ||||| || Sbjct 60088 GTCTTCCCGGTTAAGGTTTTCACGAAGATCTGCATCTT 60051 >seq892 Length=123481 Score = 89.7 bits (98), Expect = 9e-13 Identities = 109/149 (73%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||||||||| || || | | ||| || || ||||| || || ||||| ||||| || Sbjct 88338 TGTTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTGGATC 88397 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 |||| || | ||| || || || || || ||||| ||||| ||||| || || || Sbjct 88398 TTGGCCTTGACATTGTCGATGGTGTCAGATGATTCAACCTCTAGGGTTATGGTCTTCCCC 88457 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || || || ||||| || Sbjct 88458 GTTAGGGTTTTCACGAAGATCTGCATCTT 88486 >seq10943 Length=105762 Score = 86.0 bits (94), Expect = 1e-11 Identities = 160/235 (68%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 193126 TTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTAT 193185 |||| | |||||| | | ||||| || ||||| | || | ||| || ||| |||| Sbjct 54370 TTTAGAAACCACCACGAAGACGAAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTAT 54311 Query 193186 AGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGAT 193245 |||| | || || || || || | || || || |||||||| || ||||| |||| Sbjct 54310 AGTCAGCCAAAGTCCTGCCGTCCTCCAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGAT 54251 Query 193246 CAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAG 193305 | || || || || || || || || || || | || | ||| ||||||||||||| Sbjct 54250 CCGGTGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATAGTATCGGAAC 54191 Query 193306 ACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || | || || || || || || | || || ||||| || ||||| Sbjct 54190 TCTCCACCTCCAATGTGATGGTCTTCCCAGTCAAGGTCTTGACAAAAATCTGCAT 54136 >seq2938 Length=28785 Score = 84.2 bits (92), Expect = 4e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 193127 TTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATA 193186 ||| | |||||| | | ||||| || ||||| | || | ||| || ||| ||||| Sbjct 11190 TTAGAAACCACCACGAAGACGAAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTATA 11131 Query 193187 GTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATC 193246 ||| | || || || ||| || | || || || ||||| || | ||||| ||||| Sbjct 11130 GTCAGCCAAGGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATC 11071 Query 193247 AGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGA 193306 || || || || || || || || || || | || | ||| ||||||||||||| Sbjct 11070 CGGTGGAATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATAGTATCGGAACT 11011 Query 193307 CTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || | || || || || || || | ||||| ||||| || ||||| Sbjct 11010 CTCCACCTCCAATGTGATGGTCTTCCCAGTCAAGGTTTTGACAAAAATCTGCAT 10957 >seq2905 Length=56485 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 ||||||||||| || || | | ||| || || ||||| || ||||| || ||||| || Sbjct 52680 TGTTTTCCGGCGAAGATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGAATC 52621 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | || | ||| || || ||||| || || || ||||| || ||||| || || Sbjct 52620 TTTGCCTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTAATAGTCTTCCCC 52561 Query 193335 GTTAGCGTTTTTACAAATATTTGCATTTT 193363 ||||| ||||| || || || ||||| || Sbjct 52560 GTTAGGGTTTTCACGAAGATCTGCATCTT 52532 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899353904184720