Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq2938 96.9 7e-15
seq26701 87.8 4e-12
seq12303 86.0 1e-11
seq11665 86.0 1e-11
seq7849 84.2 4e-11
>seq2938
Length=28785
Score = 96.9 bits (106), Expect = 7e-15
Identities = 158/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368
|||||| | |||||| | || | ||| | || | ||| || || ||||| ||||
Sbjct 11184 ACCACCACGAAGACGAAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCAGC 11125
Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428
|| || | | |||| |||| || || ||||||||||| | ||||| ||||| |||||
Sbjct 11124 CAAGGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGG 11065
Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488
|| || || || || || || ||| || ||||| |||| ||| || || ||
Sbjct 11064 AATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATAGTATCGGAACTCTCCAC 11005
Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| | || ||||| || ||||| || ||||| | ||| ||||||||
Sbjct 11004 CTCCAATGTGATGGTCTTCCCAGTCAAGGTTTTGACAAAAATCTGCAT 10957
>seq26701
Length=70828
Score = 87.8 bits (96), Expect = 4e-12
Identities = 129/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413
||| |||||||| | | ||||| |||| || | || || ||||||||||| | ||
Sbjct 33143 GATGTTATAATCTGCAAGGGTTCGGCCATCCTCGAGCTGCTTCCCAGCAAAGATCAGCCT 33084
Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473
||| ||||| ||||| || || || || || || ||||| || ||||| || |
Sbjct 33083 CTGCTGATCTGGTGGGATCCCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATGGT 33024
Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533
||| || |||||| ||||| || || ||||| || || | || || | ||| |||||
Sbjct 33023 ATCAGAGCTTTCTACCTCTAGTGTTATTGTTTTTCCTGTGAGGGTCTTGACAAAAATCTG 32964
Query 192534 CAT 192536
|||
Sbjct 32963 CAT 32961
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
||||| || |||| | || || |||| || | ||||| ||||||||||| | |||
Sbjct 32914 ATATTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTC 32855
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| ||||| ||||| || ||||| || ||||| || || ||| ||||| || |
Sbjct 32854 TGCTGATCCGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTGTCAATGGTG 32795
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || ||| || || || || ||||| || || || | || |||| ||| ||||||
Sbjct 32794 TCAGAGCTTTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGGGTCTTAACAAAGATCTGC 32735
Query 192535 AT 192536
||
Sbjct 32734 AT 32733
>seq12303
Length=64598
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| ||||| || | || || || |||| ||||| || || ||||||||||| || |||
Sbjct 10871 ATGTTATAGTCGGCCAAGGTACGCCCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTC 10930
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| || || ||||| || || || |||||||| || || || |||||| || |
Sbjct 10931 TGCTGGTCCGGTGGGATACCCTCCTTATCTTGAATCTTTGCCTTGACATTATCGATGGTG 10990
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
|| || || || || ||||| |||||||| || || | || || | || ||||||
Sbjct 10991 TCGGAGCTCTCCACCTCGAGAGTGATGGTTTTGCCGGTAAGGGTCTTCACGAAGATCTGC 11050
Query 192535 AT 192536
||
Sbjct 11051 AT 11052
>seq11665
Length=42088
Score = 86.0 bits (94), Expect = 1e-11
Identities = 128/182 (70%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414
|| || || |||| || || || |||| |||||||| || ||||||||||| |||||
Sbjct 3759 ATGTTGTAGTCAGCCAAAGTACGCCCATCCTCCAATTGCTTCCCAGCAAAGATCAATCTA 3700
Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474
|| || || | || || ||||| |||||||| || || || |||||| || | |
Sbjct 3699 TGCTGGTCCAGAGGGATACCTTCCTTATCTTGGATCTTTGCCTTCACATTATCAATTGTA 3640
Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534
||||| || || || || || ||||| || || || || || || | || || |||
Sbjct 3639 TCTGAACTCTCCACCTCAAGTGTTATGGTCTTTCCGGTCAAAGTCTTGACGAAGATTTGC 3580
Query 192535 AT 192536
||
Sbjct 3579 AT 3578
>seq7849
Length=122270
Score = 84.2 bits (92), Expect = 4e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| || || || || || | || ||||||| || | ||| || ||| || || ||
Sbjct 79469 ATCCCGCCCCTCAGCCGCAGCACCAAATGTAGGGTTGACTCCTTCTGGATGTTGTAGTCT 79528
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || || |||| |||||||| || || || ||||| | ||||||||||| |||
Sbjct 79529 GCCAGAGTCCGCCCATCCTCCAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGT 79588
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || || |||||||| || || || || || ||| || | ||| || ||
Sbjct 79589 GGAATCCCCTCTTTATCCTGAATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTCTCA 79648
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537
|| || || || || || || || |||| ||||| | ||| || ||||||
Sbjct 79649 ACCTCGAGCGTGATTGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCATT 79699
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984142950658350
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |