Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq2938 96.9 7e-15 seq26701 87.8 4e-12 seq12303 86.0 1e-11 seq11665 86.0 1e-11 seq7849 84.2 4e-11 >seq2938 Length=28785 Score = 96.9 bits (106), Expect = 7e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | |||||| | || | ||| | || | ||| || || ||||| |||| Sbjct 11184 ACCACCACGAAGACGAAGCACAAGATGGAGGGTTGACTCCTTCTGAATGTTATAGTCAGC 11125 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || | | |||| |||| || || ||||||||||| | ||||| ||||| ||||| Sbjct 11124 CAAGGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGATCCGGTGG 11065 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || || || || ||| || ||||| |||| ||| || || || Sbjct 11064 AATCCCCTCCTTGTCCTGGATCTTAGCCTTAACATTGTCAATAGTATCGGAACTCTCCAC 11005 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || | || ||||| || ||||| || ||||| | ||| |||||||| Sbjct 11004 CTCCAATGTGATGGTCTTCCCAGTCAAGGTTTTGACAAAAATCTGCAT 10957 >seq26701 Length=70828 Score = 87.8 bits (96), Expect = 4e-12 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| |||||||| | | ||||| |||| || | || || ||||||||||| | || Sbjct 33143 GATGTTATAATCTGCAAGGGTTCGGCCATCCTCGAGCTGCTTCCCAGCAAAGATCAGCCT 33084 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| ||||| ||||| || || || || || || ||||| || ||||| || | Sbjct 33083 CTGCTGATCTGGTGGGATCCCCTCCTTGTCCTGAATTTTTGCCTTGACATTGTCAATGGT 33024 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||| || |||||| ||||| || || ||||| || || | || || | ||| ||||| Sbjct 33023 ATCAGAGCTTTCTACCTCTAGTGTTATTGTTTTTCCTGTGAGGGTCTTGACAAAAATCTG 32964 Query 192534 CAT 192536 ||| Sbjct 32963 CAT 32961 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 ||||| || |||| | || || |||| || | ||||| ||||||||||| | ||| Sbjct 32914 ATATTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAGATCAGCCTC 32855 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || ||||| ||||| || ||||| || ||||| || || ||| ||||| || | Sbjct 32854 TGCTGATCCGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCTTTGACATTGTCAATGGTG 32795 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || ||| || || || || ||||| || || || | || |||| ||| |||||| Sbjct 32794 TCAGAGCTTTCCACCTCGAGCGTGATGGTCTTGCCTGTGAGGGTCTTAACAAAGATCTGC 32735 Query 192535 AT 192536 || Sbjct 32734 AT 32733 >seq12303 Length=64598 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || ||||| || | || || || |||| ||||| || || ||||||||||| || ||| Sbjct 10871 ATGTTATAGTCGGCCAAGGTACGCCCATCCTCCAACTGCTTCCCAGCAAAGATCAACCTC 10930 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || ||||| || || || |||||||| || || || |||||| || | Sbjct 10931 TGCTGGTCCGGTGGGATACCCTCCTTATCTTGAATCTTTGCCTTGACATTATCGATGGTG 10990 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 || || || || || ||||| |||||||| || || | || || | || |||||| Sbjct 10991 TCGGAGCTCTCCACCTCGAGAGTGATGGTTTTGCCGGTAAGGGTCTTCACGAAGATCTGC 11050 Query 192535 AT 192536 || Sbjct 11051 AT 11052 >seq11665 Length=42088 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 192355 ATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTC 192414 || || || |||| || || || |||| |||||||| || ||||||||||| ||||| Sbjct 3759 ATGTTGTAGTCAGCCAAAGTACGCCCATCCTCCAATTGCTTCCCAGCAAAGATCAATCTA 3700 Query 192415 TGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAA 192474 || || || | || || ||||| |||||||| || || || |||||| || | | Sbjct 3699 TGCTGGTCCAGAGGGATACCTTCCTTATCTTGGATCTTTGCCTTCACATTATCAATTGTA 3640 Query 192475 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGC 192534 ||||| || || || || || ||||| || || || || || || | || || ||| Sbjct 3639 TCTGAACTCTCCACCTCAAGTGTTATGGTCTTTCCGGTCAAAGTCTTGACGAAGATTTGC 3580 Query 192535 AT 192536 || Sbjct 3579 AT 3578 >seq7849 Length=122270 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || || || | || ||||||| || | ||| || ||| || || || Sbjct 79469 ATCCCGCCCCTCAGCCGCAGCACCAAATGTAGGGTTGACTCCTTCTGGATGTTGTAGTCT 79528 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| |||||||| || || || ||||| | ||||||||||| ||| Sbjct 79529 GCCAGAGTCCGCCCATCCTCCAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGT 79588 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || |||||||| || || || || || ||| || | ||| || || Sbjct 79589 GGAATCCCCTCTTTATCCTGAATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTCTCA 79648 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || || || || || || || |||| ||||| | ||| || |||||| Sbjct 79649 ACCTCGAGCGTGATTGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCATT 79699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984142950658350