Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6526 239 5e-57 seq3997 221 1e-51 seq8535 214 2e-49 seq13045 201 1e-45 seq3106 86.0 8e-11 >seq6526 Length=28452 Score = 239 bits (264), Expect = 5e-57 Identities = 244/313 (78%), Gaps = 8/313 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||||| | | || || ||||| Sbjct 22190 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGCAACTTGT 22249 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| |||||||| ||||||||| |||||||||||| ||||||||| Sbjct 22250 ACCTCCTTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 22309 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGAC---ACCCAGTGG 869809 || || |||||||| ||||| ||||| ||||||| || |||| | | |||||||| Sbjct 22310 AAGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTCCCAGTGG 22369 Query 869810 ACGGTG--TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 || || | ||| || ||||||||||| || ||||||| || || || ||||| | Sbjct 22370 -CGTTGGTCCTGCG-ACAGATCCACCTCCTCCGCCGTCCAGAATGACGCTTCAGCCTTCT 22427 Query 869868 TGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGT 869927 ||||||||||||| | ||| |||| |||| ||||| | | || |||| ||||| | Sbjct 22428 TGTACATCTCCCAGATCTGCGGGTACTGGATCGGGAACATGCAGAATCGGTCTGGGTT-T 22486 Query 869928 CGCGCAACAGGGG 869940 | |||| | ||| Sbjct 22487 GGGGCAAGAAGGG 22499 Score = 156 bits (172), Expect = 5e-32 Identities = 201/278 (72%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | || ||||| || ||||| ||||| |||| ||| || ||||| | ||| Sbjct 21905 TGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGACCCGGCATTAACCCG 21964 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 ||||| ||||||||||| || |||||||| || || ||||| ||||| ||||||| | Sbjct 21965 CGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGAAGCAC 22024 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353 || || ||||||| | ||||| || | || || || |||||| |||| | Sbjct 22025 GCGAACGCGATGAGTCTTTCGGCGAACGATTCTGAACC------GTCGATCCATTTCAAC 22078 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413 ||||| | ||||||||| ||| | || | || ||||| ||| | |||||| ||||| Sbjct 22079 GCCCACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGCGTGGAAGAGGCGGTCC 22138 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || |||||||||||| ||| |||| |||| |||||| Sbjct 22139 TTCTCGGCCGGGTCCCTGATGTAGGATTCGAGCAGGAG 22176 >seq3997 Length=108068 Score = 221 bits (244), Expect = 1e-51 Identities = 227/296 (77%), Gaps = 3/296 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||| |||||||||||||| || || || | |||| || || ||| Sbjct 90082 GAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAAGCGCGGGCCTCAGCGACCTGG 90141 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| |||||||| || |||||| |||||||||||| ||| ||||| Sbjct 90142 ACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGGACGATGCCGTCGGAGGCTGCGAAG 90201 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 || || |||||||| ||| ||||| | ||||||| || | || | |||||||| Sbjct 90202 AAGGCGAGGACGTGGGAGATGAAGTGCCTCTCGTCGGCGGTTAGGGTTTGGTCCCAGTGG 90261 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 ||| ||| ||||||||||||||| || ||||||| ||| ||||| ||||| ||| Sbjct 90262 CGAAGGTCAGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGACGCCTCTGCCTTCTTG 90321 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||||||||||| | | | |||| |||| ||||| | | || |||| ||||| Sbjct 90322 TACATCTCCCAGATCTACGGGTACTGGATCGGGAACATGCAGAATCGGTCAGGGTT 90377 Score = 131 bits (144), Expect = 2e-24 Identities = 191/267 (72%), Gaps = 10/267 (4%) Strand=Plus/Plus Query 869186 TCGCGACTGATCATTTCGTT-GCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAG 869244 |||||| ||| | ||||| | |||| | || || ||||| | |||||||||||||| Sbjct 89811 TCGCGA--GATTAGCTCGTTCGAGAAAGTC-AGTCCCGGCATTAACCCGCGCTTCTTGAG 89867 Query 869245 CCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGAT 869304 |||||| || |||||||| || || ||||| ||||| ||||| ||| || || | | Sbjct 89868 CCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCACGCACGCGAACGCCAC 89927 Query 869305 GAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGC 869364 ||| |||||||| || | || ||| || |||||| |||| ||||| | ||| Sbjct 89928 GAGACGCTCGGCGAACGATTCTGAGCC------GTCGATCCATTTCAGGGCCCACTTGGC 89981 Query 869365 CTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGG 869424 ||| ||| ||| | || | || ||||| ||| | |||||| ||| ||| |||| | Sbjct 89982 CTTCTTCACCACGCAAGGGATGGTCTCGATTGCGTGGAAGAGGCGGTGCTTCTCGGAGGA 90041 Query 869425 GTCCTTGACATAGGTGTCGATCAGGAG 869451 |||||||| |||| |||| ||||| Sbjct 90042 GTCCTTGATGTAGGATTCGAGGAGGAG 90068 >seq8535 Length=22056 Score = 214 bits (236), Expect = 2e-49 Identities = 216/277 (78%), Gaps = 7/277 (3%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||| ||||||||||| ||||| | | | || || ||||| Sbjct 6896 GAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGACTTGT 6955 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| ||||| || ||||||||| |||||||| || ||||||||| Sbjct 6956 ACCTCCTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCGAAG 7015 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGAC---ACCCAGTGG 869809 || || |||||||| |||| ||||| ||||||| || |||| | | |||||||| Sbjct 7016 AAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAGTGG 7075 Query 869810 ACGGTG--TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTT 869867 || || | ||| || ||||| ||||| || ||||||| ||| || |||||||| | Sbjct 7076 -CGTTGGTCCTGCG-ACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCTTCT 7133 Query 869868 TGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||||||||||||| | ||| |||| | || ||||| Sbjct 7134 TGTACATCTCCCAGATCTGCGGGTACTGAATCGGGAA 7170 Score = 156 bits (172), Expect = 5e-32 Identities = 201/278 (72%), Gaps = 6/278 (2%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | || ||||| || ||||| ||||| || | ||| || ||||| | ||| Sbjct 6611 TGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGCATTAACCCG 6670 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 ||||| ||||||||||| || |||||||| || || ||||| ||||| ||||| ||| Sbjct 6671 CGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCACGCAC 6730 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATC 869353 || || ||||||||| ||||| || | || || || ||||||||||| | Sbjct 6731 GCGAATGCGATGAGCCTTTCGGCGAACGATTCTGAACC------GTCGATCCACTTCAAC 6784 Query 869354 GCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCC 869413 ||||| | |||||||| ||| | || || || ||||| ||| | |||||| ||| | Sbjct 6785 GCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGGAAGAGGCGGTTC 6844 Query 869414 TTTTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAG 869451 || ||||||| |||||||| |||| |||| |||||| Sbjct 6845 TTCTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAG 6882 Score = 104 bits (114), Expect = 3e-16 Identities = 218/321 (68%), Gaps = 8/321 (2%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || | | ||| ||||| |||||||| |||| | |||| Sbjct 6302 GCCTTCTGGTACTCCCCAACCCTCTTCTCAAAAAAATTGGTCTTCCCCTGTAAACTGATC 6361 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| |||||||||||| ||| ||| | || ||||||| | Sbjct 6362 AGCTCCATCCAATCGAACGGGTTGGGAACACCGTACATCTTACCACACCCGAGCGCACCC 6421 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 | || | || ||||| || ||||||||||||| ||| || | ||||||| || | Sbjct 6422 AAAAGCCTATCCGCGACGAATTCGATGTACTGGCTCATCAGATCACCGTTCATTCCCACC 6481 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||| |||| |||| ||| |||||| |||| ||| || || ||| | | | Sbjct 6482 AGGGCGCACGGGAGCGCGTCGCACACGAACTCTCTCTCTATCGTCACCGCGTCGGCAACG 6541 Query 868931 ATCTGCCTGGGCACGTCGG-CCGAG---GGCTTGTTGACGAGCATCGTGTAGAGCAGGCA 868986 ||| |||| || |||| || | || |||| | || | |||||| ||||| Sbjct 6542 ATCCCCCTG---AC-TCGGTCCTCGCTCGGTTTGTGAGTCATCAACTCGTAGAGAAGGCA 6597 Query 868987 GGCAAAGTCGCAGTGCAACCC 869007 || || ||||||||||| || Sbjct 6598 CGCGAAATCGCAGTGCAAGCC 6618 >seq13045 Length=6999 Score = 201 bits (222), Expect = 1e-45 Identities = 212/276 (77%), Gaps = 5/276 (2%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||||| |||||||||||||||||| ||||| | |||| || || ||| Sbjct 1098 GAGTGGATGTTCTCGACGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGCGACCTGG 1157 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| |||||||| ||||||| | |||||||||||| ||||||||| Sbjct 1158 ACCTCCTTCATGAAGCGGCCGGCGAGGTTCTTGAGGACGATGCCGTCGGAGGCGGCGAAG 1217 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCG---ACACCCAGTGG 869809 || || |||||||| ||| ||||| | ||||||| | | || | |||||| | Sbjct 1218 AAGGCTAGGACGTGAGAGATGAAGTGCCCCTCGTCGGGGGTTAGGGTTTGGTCCCAGT-G 1276 Query 869810 ACGG-TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTT 869868 |||| || |||| |||||||| ||||| | ||| ||| || || || ||||| || Sbjct 1277 ACGGAGGTTGGCGGAGAGGTCCAGCTCCTACACCGTCTAGAATGACGCTTCCGCCTTCTT 1336 Query 869869 GTACATCTCCCATACTTGCTGGTAGCGGATAGGGAA 869904 ||||| ||| || | |||||||| |||| |||| Sbjct 1337 GTACAGCTCTCAGATCTGCTGGTACTGGATCTGGAA 1372 >seq3106 Length=190431 Score = 86.0 bits (94), Expect = 8e-11 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| || |||| ||| ||||| ||| | || || | ||||| || Sbjct 169062 GCAGCAAACTATCTGAACATTAAGAGCCTGCTAGATTTGACATGTCAGACAGTGGCGGAC 169121 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 ||||||||||| ||| | || ||||||||||||||||| |||||||||||| ||| Sbjct 169122 ATGATCAAGGGAAAGACTCCGGAGGAGATCCGCAAGACATTTAACATCAAGAACG 169176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104946349605557