Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq22277 96.9 3e-15
seq5804 91.5 1e-13
>seq22277
Length=3790
Score = 96.9 bits (106), Expect = 3e-15
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331
||||| || ||||||||||| | ||||| ||||| |||||| |||| || | ||
Sbjct 1760 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAAACGATTACCCTCGAGGTCGAAAGCTCT 1819
Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391
||||| ||| | | || || || ||| ||||| || || | || ||||||
Sbjct 1820 -GATACCATCGACAATGTCAAGGCAAAAATTCAGGACAAGGAGGGGATCCCACCGGATCA 1878
Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451
|| || || || | ||| || |||||||||||||||| | | || | |||||||||||
Sbjct 1879 GCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAGGATGGCCGCACCCTCGCGGATTACAA 1938
Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481
||| || || ||||| || | ||| ||||
Sbjct 1939 CATCCAGAAGGAATCGACCCTCCACTTGGT 1968
>seq5804
Length=153150
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || ||||| ||||| | |||||||| ||||| ||| |||| |||| |
Sbjct 32334 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGAGCTCC 32393
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
|| || ||| | | || || ||||| ||||| || || | || ||||||
Sbjct 32394 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCAG 32453
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| || || || | ||| || || ||||| ||||| | | |||| | || || ||||||
Sbjct 32454 CAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCGCCGACTACAAC 32513
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482
||||| |||||||| || | ||| |||||
Sbjct 32514 ATTCAGAAAGAATCCACCCTCCACCTGGTG 32543
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412707153101453
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |