Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq8535 197 2e-44 seq3997 192 9e-43 seq6526 185 1e-40 seq13045 154 2e-31 seq12741 105 1e-16 seq11843 102 1e-15 seq18374 98.7 2e-14 seq3106 86.0 1e-10 >seq8535 Length=22056 Score = 197 bits (218), Expect = 2e-44 Identities = 237/319 (74%), Gaps = 10/319 (3%) Strand=Plus/Plus Query 794347 TCGCGACTGATCAATTCGTT-GCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAG 794405 |||||| ||||| ||||| | |||| ||| || ||||| | |||||||| ||||| Sbjct 6625 TCGCGA--GATCAGCTCGTTCGAGAAAGT-GAGACCCGGCATTAACCCGCGCTTTTTGAG 6681 Query 794406 CCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGAC 794465 |||||| || || ||||| || || ||||| ||||| ||||| ||| || || ||| Sbjct 6682 CCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCACGCACGCGAATGCGAT 6741 Query 794466 GAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGC 794525 ||||| ||||| || | || || || ||||||||||| |||||||| ||| Sbjct 6742 GAGCCTTTCGGCGAACGATTCTGAACCGTC------GATCCACTTCAACGCCCACTTTGC 6795 Query 794526 CTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGG 794585 |||||| ||| | || || || ||||| ||| | |||||| ||| ||||||| ||| Sbjct 6796 CTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGGAAGAGGCGGTTCTTCTCGGCCGA 6855 Query 794586 GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGC 794645 |||||||| ||||| |||| ||||| ||| | || ||||||||||| |||||||| Sbjct 6856 GTCCTTGATGTAGGATTCGAGCAGGAGGCTGTACATTTCGGAGTGGATGTTCTCGATGGC 6915 Query 794646 GATCTGGAAGCCATAAAAG 794664 ||| |||||||| || ||| Sbjct 6916 GATTTGGAAGCCGTAGAAG 6934 Score = 152 bits (168), Expect = 8e-31 Identities = 178/235 (76%), Gaps = 9/235 (4%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 || |||| ||||| |||||||||||||| ||||| || |||||||| |||||||| Sbjct 6941 GCTTCGGCGACTTGTACCTCCTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCA 7000 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268 || ||||||||| |||||||||||||| |||| ||||| ||||||| || |||| Sbjct 7001 TCTGAGGCGGCGAAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGG 7060 Query 796269 --CGAGACCCAGTGGACCGT--GT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAG 796323 | |||||||| ||| || | ||| | || || || ||||| || ||||| || Sbjct 7061 GCCTCATCCCAGTGG--CGTTGGTCCTGCGAC-AGATCCACTTCCTCCGCCGTCCAGAAC 7117 Query 796324 GAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || || |||||||| |||||||||||||| ||| | |||| | || ||||||| Sbjct 7118 GACGCTTCGGCCTTCTTGTACATCTCCCAGATCTGCGGGTACTGAATCGGGAACA 7172 Score = 98.7 bits (108), Expect = 2e-14 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| || || | | ||| ||||| |||||||| |||| | ||||| ||||||| Sbjct 6311 TACTCCCCAACCCTCTTCTCAAAAAAATTGGTCTTCCCCTGTAAACTGATCAGCTCCATC 6370 Query 793968 CACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGAGCG-ACGCAAGCAGGCG 794026 || ||||||||||| ||| ||| | |||||||||| || ||| || | Sbjct 6371 CAATCGAACGGGTTGGGAACACCGTACATCTTACCACACCCGAGCGCACCCAAA-AGCCT 6429 Query 794027 GTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-CA 794085 || ||||||||||| |||||||||| ||| || | ||||||| || | || || || Sbjct 6430 ATCCGCGACGAATTCGATGTACTGGCTCATCAGATCACCGTTCATTCCCACCAGGGCGCA 6489 Query 794086 CGGGCAGCGACTCGCTGACAAACTCTTTCTCGATC 794120 |||| |||| |||| || |||||| |||| ||| Sbjct 6490 CGGG-AGCGCGTCGCACACGAACTCTCTCTCTATC 6523 >seq3997 Length=108068 Score = 192 bits (212), Expect = 9e-43 Identities = 217/290 (75%), Gaps = 7/290 (2%) Strand=Plus/Plus Query 794377 AGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAA 794436 || || ||||| | |||||||||||||||||||| || || ||||| || || ||||| Sbjct 89839 AGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAG 89898 Query 794437 AAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCT 794496 ||||| ||||| ||| || || | ||||| |||||||| || | || ||| || Sbjct 89899 AAGATCCCCTCCACGCACGCGAACGCCACGAGACGCTCGGCGAACGATTCTGAGCCGTC- 89957 Query 794497 TTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 |||||| |||| ||||||| ||||| ||| ||| | || | || ||||| Sbjct 89958 -----GATCCATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGATT 90012 Query 794557 GCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAG 794616 ||| | |||||| ||| ||||||| | |||||||| ||||| |||| |||||| | Sbjct 90013 GCGTGGAAGAGGCGGTGCTTCTCGGAGGAGTCCTTGATGTAGGATTCGAGGAGGAGGCTG 90072 Query 794617 TAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATA-AAAGC 794665 || |||| ||||||||||| ||||| ||||||||||||||||| ||||| Sbjct 90073 TACATCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAAGC 90122 Score = 179 bits (198), Expect = 6e-39 Identities = 180/233 (77%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||| | || |||||||||||||||||||||||||| || ||||| |||||||| Sbjct 90126 GGCCTCAGCGACCTGGACCTCCTTCATGAAGCGGCCGGCGAGATTCTCGAGGACGATGCC 90185 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||| ||||| |||||||||||||| ||| ||||| | ||||||| || | || Sbjct 90186 GTCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGCCTCTCGTCGGCGGTTAG 90245 Query 796269 CG---AGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGA 796325 | | |||||||| ||| ||| |||||| |||||||| || ||||| || || Sbjct 90246 GGTTTGGTCCCAGTGGCGAAGGTCAGCGGAGAGGTCCACCTCCTCCGCCGTCCAGAACGA 90305 Query 796326 GGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 ||||| ||||| |||||||||||||| ||| |||| |||| ||||||| Sbjct 90306 CGCCTCTGCCTTCTTGTACATCTCCCAGATCTACGGGTACTGGATCGGGAACA 90358 >seq6526 Length=28452 Score = 185 bits (204), Expect = 1e-40 Identities = 232/318 (73%), Gaps = 8/318 (3%) Strand=Plus/Plus Query 794347 TCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGC 794406 |||||| ||||| ||||| ||| ||| || ||||| | |||||||| |||||| Sbjct 21919 TCGCGA--GATCAGCTCGTTCGAGAAGGTGAGACCCGGCATTAACCCGCGCTTTTTGAGC 21976 Query 794407 CAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACG 794466 ||||| || || ||||| || || ||||| ||||| ||||||| | || || ||| | Sbjct 21977 CAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGAAGCACGCGAACGCGATG 22036 Query 794467 AGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCC 794526 || | ||||| || | || || || |||||| |||| |||||||| ||| Sbjct 22037 AGTCTTTCGGCGAACGATTCTGAACCGTC------GATCCATTTCAACGCCCACTTGGCC 22090 Query 794527 TTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGG 794586 ||||| ||| | || | || ||||| ||| | |||||| ||||||||||| ||||| Sbjct 22091 TTTTTTTCCACGCAAGGGATGGTCTCGATCGCGTGGAAGAGGCGGTCCTTCTCGGCCGGG 22150 Query 794587 TCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCG 794646 ||| ||| ||||| |||| ||||| ||| | || ||||||||||| ||||||||| Sbjct 22151 TCCCTGATGTAGGATTCGAGCAGGAGGCTGTACATTTCGGAGTGGATGTTCTCGATGGCG 22210 Query 794647 ATCTGGAAGCCATAAAAG 794664 || |||||||| || ||| Sbjct 22211 ATTTGGAAGCCGTAGAAG 22228 Score = 179 bits (198), Expect = 6e-39 Identities = 184/235 (78%), Gaps = 9/235 (4%) Strand=Plus/Plus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 || |||| ||||| |||||||||||||| |||||||| |||||||| ||||||||| Sbjct 22235 GCTTCGGCAACTTGTACCTCCTTCATGAAACGGCCGGCGAGGTTCTCGAGGACGATGCCG 22294 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG- 796268 ||| ||||||||| |||||||||||||| ||||| ||||| ||||||| || |||| Sbjct 22295 TCGGAGGCGGCGAAGAAGGCGAGGACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGG 22354 Query 796269 --CGAGACCCAGTGGACCGT--GT-CGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAG 796323 | | |||||||| ||| || | ||| | || || |||||||| || ||||| || Sbjct 22355 GCCTCGTCCCAGTGG--CGTTGGTCCTGCGAC-AGATCCACCTCCTCCGCCGTCCAGAAT 22411 Query 796324 GAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 || || || ||||| |||||||||||||| ||| | |||| |||| ||||||| Sbjct 22412 GACGCTTCAGCCTTCTTGTACATCTCCCAGATCTGCGGGTACTGGATCGGGAACA 22466 >seq13045 Length=6999 Score = 154 bits (170), Expect = 2e-31 Identities = 212/292 (73%), Gaps = 7/292 (2%) Strand=Plus/Plus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| || |||||||||||||||||||||||||| ||||||| |||||||| Sbjct 1142 GGCCTCGGCGACCTGGACCTCCTTCATGAAGCGGCCGGCGAGGTTCTTGAGGACGATGCC 1201 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||| ||||| |||||||| ||| ||||| | ||||||| | | || Sbjct 1202 GTCGGAGGCGGCGAAGAAGGCTAGGACGTGAGAGATGAAGTGCCCCTCGTCGGGGGTTAG 1261 Query 796269 CG---AGACCCAGTGGACCG-TGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGG 796324 | | |||||| ||| | || |||| |||||| | ||||| | ||| | || | Sbjct 1262 GGTTTGGTCCCAGT-GACGGAGGTTGGCGGAGAGGTCCAGCTCCTACACCGTCTAGAATG 1320 Query 796325 AGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAA 796384 | || || ||||| ||||||| ||| || ||| | ||||| |||| |||| | | | Sbjct 1321 ACGCTTCCGCCTTCTTGTACAGCTCTCAGATCTGCTGGTACTGGATCTGGAAAATACAGA 1380 Query 796385 AGCGATTGGGGTTCTCGCGTAGCAGCGGCTCGCATGACGCGTCGAGTGCAGT 796436 | |||| |||||| | || || |||||| ||| ||||| ||||| Sbjct 1381 ATCGATCCGGGTTCGGGGCCAGTAGGGGCTCG--TGAGAGATCGAGGGCAGT 1430 >seq12741 Length=59280 Score = 105 bits (116), Expect = 1e-16 Identities = 167/237 (70%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 1485473 ACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGA 1485532 |||| || || ||||| || ||||| || ||||||||| | ||||| || || ||| | Sbjct 28914 ACTTAGTCACCGCCTTTGTCCCCTCCGACACGGCGTGCTTTGCCAGCTCTCCAGGCAACA 28855 Query 1485533 TCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCG 1485592 ||| | ||| || ||||||||||| || | | ||||||| |||||| | | Sbjct 28854 CCAGCCTCACCGCCGTCTGGATCTCACGAGAGGTGATCGTGGGCTTCTTGTTGTACCTGG 28795 Query 1485593 CCAGGCGGCCGGCCTC-GGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATG 1485651 | || | | |||||| ||| ||| |||| |||||||||| || ||||||| Sbjct 28794 CGAGCCTGGAGGCCTCTTGTG-CGAGTTTCTCGAAGATGTCGTTGATGAAGCTGTTCATG 28736 Query 1485652 ATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 || ||| | ||| | ||||| || | ||| ||||| |||||||| ||||||||| Sbjct 28735 ATACCCATGGCCTTGCTCGAGATCCCGATGTCAGGGTGTACCTGCTTCAGCACCTTG 28679 >seq11843 Length=69859 Score = 102 bits (112), Expect = 1e-15 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || || |||||||| || || || || |||||| |||||| ||| ||| | | Sbjct 10534 TGAACTTCGTAACCGCCTTGGTCCCTTCAGAAACCGCGTGCTTGGCCAATTCACCGGGAA 10475 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||||||||| ||||| | || |||||| |||||| || Sbjct 10474 GAACGAGCCTAACGGCGGTCTGAATCTCCCTGGATGTGATCGTCGGCTTCTTGTTGTAGC 10415 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || | | |||||| ||| |||| |||||||||| || ||||| Sbjct 10414 GCGCGAGCCTGGAGGCCTCCTGAGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCA 10355 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| | ||||| || | |||||| || |||||||| | ||||||| Sbjct 10354 TGATCCCCATGGCCTTGCTCGAGATCCCGATGTCGGGATGAACCTGCTTCAACACCTTG 10296 >seq18374 Length=65070 Score = 98.7 bits (108), Expect = 2e-14 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || |||| || || |||||||| || || || || || ||| |||||| ||| ||| | | Sbjct 5834 TGAACTTCGTAACCGCCTTGGTCCCTTCAGAAACCGCATGCTTGGCCAATTCACCGGGAA 5893 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || | ||||||||||| ||||| | || |||||| |||||| || Sbjct 5894 GAACGAGCCTAACGGCGGTCTGAATCTCCCTGGATGTGATCGTCGGCTTCTTGTTGTAGC 5953 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || | | |||||| ||| |||| |||||||||| || ||||| Sbjct 5954 GCGCGAGCCTGGAGGCCTCCTGAGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCA 6013 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||||| ||| | ||| | ||||| || | |||||| || |||||||| | ||||||| Sbjct 6014 TGATCCCCATGGCCTTGCTCGAGATCCCGATGTCGGGATGAACCTGCTTCAACACCTTG 6072 >seq3106 Length=190431 Score = 86.0 bits (94), Expect = 1e-10 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 2035647 GCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAAC 2035706 || || ||||| || |||| ||| ||| || |||||| || |||| ||||| || Sbjct 169062 GCAGCAAACTATCTGAACATTAAGAGCCTGCTAGATTTGACATGTCAGACAGTGGCGGAC 169121 Query 2035707 CTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAGTACG 2035761 | |||||||| ||| | || ||||| ||||||||||| |||||||||||| ||| Sbjct 169122 ATGATCAAGGGAAAGACTCCGGAGGAGATCCGCAAGACATTTAACATCAAGAACG 169176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7913403965355519