Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq12303 104 2e-17 seq4434 100 2e-16 seq10943 98.7 8e-16 seq5804 95.1 1e-14 seq2938 95.1 1e-14 seq22277 93.3 3e-14 seq26701 84.2 2e-11 seq21627 84.2 2e-11 seq19972 82.4 6e-11 seq8351 82.4 6e-11 seq2905 82.4 6e-11 >seq12303 Length=64598 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || || || || || ||||| ||| | ||| |||| ||| | Sbjct 10824 ATGCAGATTTTTGTCAAGACCTTGACTGGGAAGACCATCACCTTGGAAGTGGAGAGCTCG 10765 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | || || ||||| ||||| || ||| | || |||||| Sbjct 10764 -GACACTATTGATAATGTGAAGGCTAAGATCCAGGATAAGGAGGGCATTCCGCCGGATCA 10706 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||||||||||| || || | || |||||||| Sbjct 10705 GCAGAGGCTGATCTTCGCTGGGAAGCAGCTGGAGGACGGCAGGACGTTAGCTGACTACAA 10646 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 |||||| |||||||| || |||| Sbjct 10645 CATTCAGAAGGAGTCGACCCTGCA 10622 >seq4434 Length=125464 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| ||||| || || || ||||| ||| | ||| |||| ||| | Sbjct 10250 ATGCAGATTTTTGTCAAGACTTTGACCGGGAAGACCATCACCTTGGAAGTGGAGAGCTCG 10191 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || || ||||| ||||| || ||| | || |||||| Sbjct 10190 -GACACCATTGATAATGTGAAGGCTAAGATCCATGATAAGGAGGGCATTCCGCCGGATCA 10132 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||||||||||| | || | || |||||||| Sbjct 10131 GCAGAGGCTAATCTTCGCTGGGAAGCAGCTGGAGGACGGAAGGACTTTAGCTGACTACAA 10072 Query 107735 CATTCAAAAGGAGTCTACGTTGCA 107758 |||||| |||||||| || |||| Sbjct 10071 CATTCAGAAGGAGTCAACCCTGCA 10048 >seq10943 Length=105762 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || || || || || ||||| || | || |||| | | Sbjct 54136 ATGCAGATTTTTGTCAAGACCTTGACTGGGAAGACCATCACATTGGAGGTGGAGAGTTCC 54195 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | || || ||||| || || || || | || ||||||| Sbjct 54196 GATACTATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAG 54255 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | |||| ||| || || ||||||||||||| || || |||| ||||| ||| Sbjct 54256 CAGAGGTTGATTTTTGCTGGGAAGCAGCTGGAGGACGGCAGGACTTTGGCTGACTATAAC 54315 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 54316 ATTCAGAAGGAGTCAAC 54332 >seq5804 Length=153150 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||||||||| || || || || || ||||| ||| | || |||| | | Sbjct 33246 ATGCAGATTTTTGTCAAGACCTTGACTGGGAAGACCATCACCTTGGAGGTGGAGAGTTCC 33305 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||||| || || || || | || |||||| Sbjct 33306 GATACCATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATCCCACCAGATCAG 33365 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||||||||||| | || |||| ||||||||| Sbjct 33366 CAGAGGCTGATATTTGCTGGGAAGCAGCTGGAGGACGGAAGGACTTTGGCTGACTACAAC 33425 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 33426 ATTCAGAAGGAGTCGAC 33442 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| ||||| | || ||||| ||||| ||| |||| |||| ||| Sbjct 32334 ATGCAGATCTTTGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGAGCTC- 32392 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || ||||| || || || || | || |||||| Sbjct 32393 CGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCTCCGGATCA 32452 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || || ||||| ||||||| | ||| | || |||||||| Sbjct 32453 GCAGAGGCTCATCTTTGCCGGAAAGCAGCTCGAGGACGGCCGAACCCTCGCCGACTACAA 32512 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 |||||| || || || || | ||| ||||| Sbjct 32513 CATTCAGAAAGAATCCACCCTCCACCTGGTG 32543 >seq2938 Length=28785 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| |||||||||||||| || || || || ||||| || | || |||| | | Sbjct 10957 ATGCAGATTTTTGTCAAAACCTTGACTGGGAAGACCATCACATTGGAGGTGGAGAGTTCC 11016 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | | || || ||||| || || || || | || ||||||| Sbjct 11017 GATACTATTGACAATGTTAAGGCTAAGATCCAGGACAAGGAGGGGATTCCACCGGATCAG 11076 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||||||||| | | || |||| ||||| ||| Sbjct 11077 CAGAGGCTGATCTTTGCTGGGAAGCAGCTGGAGGATGGAAGGACCTTGGCTGACTATAAC 11136 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||| |||||||| || Sbjct 11137 ATTCAGAAGGAGTCAAC 11153 Score = 86.0 bits (94), Expect = 5e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || | || ||||| ||||| ||| |||| ||| ||| Sbjct 10273 ATGCAGATTTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTC- 10331 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || ||||| ||||| || || | || |||||| Sbjct 10332 CGACACCATCGACAACGTCAAGGCCAAGATCCAGGATAAGGAGGGTATCCCTCCGGATCA 10391 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | || || || ||||| ||||||| | ||| | || |||||||| Sbjct 10392 GCAGAGGCTCATCTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACCCTCGCAGACTACAA 10451 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||| || || || || || | ||| ||||| Sbjct 10452 CATCCAGAAAGAATCGACCCTCCACTTGGTG 10482 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| ||||| | || ||||| ||||| ||| |||| ||| ||| Sbjct 10045 ATGCAGATTTTTGTGAAAACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAAAGCTC- 10103 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || ||||| || || || ||| | || |||||| Sbjct 10104 CGACACCATCGACAACGTTAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGATCA 10163 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| || || || ||||| ||||||| | ||| | || |||||||| Sbjct 10164 GCAGAGGCTCATTTTCGCAGGAAAGCAGCTCGAGGACGGCCGAACCCTCGCTGACTACAA 10223 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || || || || || Sbjct 10224 CATCCAGAAAGAATCGAC 10241 >seq22277 Length=3790 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 ||||| || ||||||||||| | || || ||||| |||||| |||| || | ||| Sbjct 1760 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAAACGATTACCCTCGAGGTCGAAAGCTCT 1819 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| ||| | | || || ||| ||| || || || || | || |||||| Sbjct 1820 -GATACCATCGACAATGTCAAGGCAAAAATTCAGGACAAGGAGGGGATCCCACCGGATCA 1878 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || |||||||||||||| | | || | ||||| ||||| Sbjct 1879 GCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAGGATGGCCGCACCCTCGCGGATTACAA 1938 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || ||||| || || | ||| |||| Sbjct 1939 CATCCAGAAGGAATCGACCCTCCACTTGGT 1968 >seq26701 Length=70828 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || || || || | || ||||| ||||| ||| |||| ||| ||| Sbjct 32277 ATGCAGATCTTCGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAAAGCTC- 32335 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || ||| | | || || |||||| |||||||||||| | || || || Sbjct 32336 CGACACCATCGACAATGTCAAGGCAAAGATCCAGGATAAAGAAGGCATCCCACCAGACCA 32395 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || || || | ||| || || ||||| ||||||| | || | ||||||||||| Sbjct 32396 GCAAAGGCTGATCTTTGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTAGCGGACTACAA 32455 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || |||||||| || Sbjct 32456 CATCCAGAAGGAGTCAAC 32473 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || ||||| || || | |||||||| ||||| || |||| ||| ||| Sbjct 32733 ATGCAGATCTTTGTTAAGACCCTCACAGGCAAGACCATCACGCTCGAGGTGGAAAGCTCT 32792 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| |||||| || || ||||| | || |||||| Sbjct 32793 -GACACCATTGACAATGTCAAAGCCAAGATTCAAGACAAGGAAGGGATCCCACCGGATCA 32851 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || |||||||| ||||| | | || |||| |||||||| Sbjct 32852 GCAGAGGCTGATCTTTGCTGGAAAACAGCTTGAGGATGGCCGCACCCTGGCTGACTACAA 32911 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 ||||| ||||| || || ||||| Sbjct 32912 TATTCAGAAGGAATCGACCCTGCAC 32936 >seq21627 Length=4779 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 ||||| || ||||||||||| | || || ||||| |||||| |||| || | ||| Sbjct 3022 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAAACGATTACCCTCGAGGTCGAAAGCTCT 2963 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || || ||| ||| || || || || | || |||||| Sbjct 2962 -GATACCATTGACAATGTCAAGGCAAAAATTCAGGACAAGGAGGGGATCCCACCGGATCA 2904 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | ||| || |||||||| ||||| | | || | ||||| ||||| Sbjct 2903 GCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCCTCGCGGATTACAA 2844 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || ||||| || || | ||| |||| Sbjct 2843 CATCCAGAAGGAATCGACCCTCCACTTGGT 2814 >seq19972 Length=4408 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || || ||||| |||| || || ||||| ||| |||| ||| | Sbjct 3808 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTCGAGGTCGAGTCC 3867 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || || ||||| || || || || | || ||| Sbjct 3868 TCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGAC 3927 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||| ||||||| | || ||||||||||| Sbjct 3928 CAGCAGCGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACTTTGGCGGACTAC 3987 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || |||||||| || ||||| ||||| Sbjct 3988 AACATCCAGAAGGAGTCGACTCTGCACCTGGTG 4020 >seq8351 Length=11701 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 |||||||| || || || ||||| |||| || || ||||| ||| |||| ||| | Sbjct 2652 AAAATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATAACCCTCGAGGTCGAGTCC 2711 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 || || ||| | | || || ||||| || || || || | || ||| Sbjct 2712 TCGGACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGAATCCCACCGGAC 2771 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || || ||||| ||||||| | || ||||||||||| Sbjct 2772 CAGCAGCGGCTCATCTTCGCCGGAAAGCAGCTCGAGGACGGCCGGACTTTGGCGGACTAC 2831 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || |||||||| || ||||| ||||| Sbjct 2832 AACATCCAGAAGGAGTCGACTCTGCACCTGGTG 2864 >seq2905 Length=56485 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107553 AAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCT 107612 || ||||| || || || ||||| |||| || || || |||||| | || || | Sbjct 52532 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACTATTACCCTAGAGGTCGAATCC 52591 Query 107613 GGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGAT 107672 ||| || ||| | | || || ||||||| || || |||||| | || || Sbjct 52592 TCCGACACCATCGACAATGTCAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAGAC 52651 Query 107673 CAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTAC 107732 |||||| | || || | || || |||||||||||||||| || | || |||||| Sbjct 52652 CAGCAGCGGCTGATCTTCGCCGGAAAACAGCTGGAGGACGGACGCACCCTCGCCGACTAC 52711 Query 107733 AACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 ||||| || |||||||| ||| | ||| ||||| Sbjct 52712 AACATCCAGAAGGAGTCGACGCTCCACTTGGTG 52744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398746900908769