Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq6340 120 7e-22 seq18541 114 3e-20 seq17051 89.7 1e-12 seq12146 89.7 1e-12 seq1052 89.7 1e-12 seq12782 87.8 4e-12 >seq6340 Length=78611 Score = 120 bits (132), Expect = 7e-22 Identities = 162/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 279875 GATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTA 279934 |||||| ||||||| || | ||||| | ||| ||| |||||| ||||| || ||| Sbjct 16812 GATGGTCTGAAACCAGGTCAAAGGAAGATCCTTTTCTGTTCTTTCAAGAGAAACTTTGTA 16871 Query 279935 AAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCAC 279994 |||||| | ||||||||||| | |||||||| || || ||| | | ||| ||||| Sbjct 16872 AAGGAAGCTAAAGTTGCTCAGTTTTCTGGTTATGTATCTGAGCATTCGGCTTACCATCAT 16931 Query 279995 GGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAA 280052 ||||| || ||||| || || | ||| | || | || || |||| | ||| | Sbjct 16932 GGTGAGCAGAGTCTCGCCA--GTACCATTATTGGAATGGCACAGGATTATGTGGGCAGCA 16989 Query 280053 ACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGT 280096 ||||| |||| || ||| ||||||||| ||||||||| ||||| Sbjct 16990 ACAACATAAACCTTCTTCAACCAAATGGCCAATTTGGTACTCGT 17033 >seq18541 Length=33550 Score = 114 bits (126), Expect = 3e-20 Identities = 162/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 279875 GATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTA 279934 |||||| ||||||| || | ||||| | ||| ||| |||||| |||| || || Sbjct 21911 GATGGTCTGAAACCAGGTCAAAGGAAGATCCTTTTCTGTTCTTTCAAGCGAAACTTTGTT 21970 Query 279935 AAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCAC 279994 |||||| | ||||||||||| | |||||||| || || ||| ||| ||| ||||| Sbjct 21971 AAGGAAGCTAAAGTTGCTCAGTTCTCTGGTTATGTATCTGAGCATTCAGCTTACCATCAT 22030 Query 279995 GGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAA 280052 ||||| || ||||| ||| || | ||| | || | || || |||| | ||| | Sbjct 22031 GGTGAGCAGAGTCTC-GCAA-GTACCATTATTGGAATGGCACAGGATTATGTGGGCAGCA 22088 Query 280053 ACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGT 280096 ||||| |||| |||||| ||||||||| |||||||| ||||| Sbjct 22089 ACAACATAAACCTGCTTCAACCAAATGGCCAATTTGGAACTCGT 22132 >seq17051 Length=68824 Score = 89.7 bits (98), Expect = 1e-12 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366 |||| |||| ||| || | ||||| ||||| || ||||| |||||||| |||| Sbjct 49868 GACACTTGATTGATGGAGACTTTGTTCTCTTCAACAGACAACCGAGTCTGCATAAGATGT 49927 Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTG 305426 | || |||| || ||| | ||| | | | | || || || || ||| || || Sbjct 49928 CCATCATGGGGCACAAAATTAAAATCATGCCATACTCAACCTTCCGCTTGAATTTATCTG 49987 Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486 | | | || || ||||| ||||||||||||||||| ||||| |||||||| ||||||| Sbjct 49988 TTACTTCCCCATACAATGCAGATTTTGATGGAGATGAGATGAACATGCATGTCCCTCAAT 50047 Query 305487 CA 305488 || Sbjct 50048 CA 50049 >seq12146 Length=52644 Score = 89.7 bits (98), Expect = 1e-12 Identities = 121/167 (72%), Gaps = 4/167 (2%) Strand=Plus/Plus Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383 |||| || |||||||| || || || || ||||||||||| || |||| ||||| Sbjct 33525 GATTTTGTACTGTTCAACAGACAGCCTAGTCTTCATAAAATGTCCATCATGGGGCATAAG 33584 Query 305384 GTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATA 305441 |||| ||||| | | || || ||| | ||| || || | ||||| || | Sbjct 33585 ATCAAG--ATTATGCCACACTCAACTTTCCGACTCAATTTATCTGTTACCACGCCATACA 33642 Query 305442 ATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 |||| || |||||||| ||||||||||||||||||||||| || ||| Sbjct 33643 ATGCTGACTTTGATGGGGATGAAATGAATATGCATGTACCCCAGTCA 33689 >seq1052 Length=126806 Score = 89.7 bits (98), Expect = 1e-12 Identities = 118/160 (74%), Gaps = 4/160 (3%) Strand=Plus/Minus Query 305331 TTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAG 305390 |||| ||||| || ||||| |||||||| ||||| || |||| || ||| ||||| Sbjct 107369 TTCTCTTCAACAGACAACCGAGTCTGCATAAGATGTCCATCATGGGGCACAAAATCAAA- 107311 Query 305391 TATTAT-CTGGATTGA-CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGA 305448 || || | | | | | | || || || ||| || || | | | || || ||||| || Sbjct 107310 -ATCATGCCGTACTCAACCTTCCGCTTGAATTTATCTGTTACTTCCCCGTACAATGCAGA 107252 Query 305449 TTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488 ||||||||||||||| ||||| |||||||| ||||| ||| Sbjct 107251 TTTTGATGGAGATGAGATGAACATGCATGTCCCTCAGTCA 107212 >seq12782 Length=73914 Score = 87.8 bits (96), Expect = 4e-12 Identities = 135/191 (71%), Gaps = 4/191 (2%) Strand=Plus/Plus Query 279908 TTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTAT 279967 ||| ||| |||||| ||| || || |||||| | ||||||||||| | ||||| Sbjct 42361 TTCTGTTCTTTCAAGCGAACCTTTGTTAAGGAAGCTAAAGTTGCTCAGTTCTCTTGTTAT 42420 Query 279968 GTTTCAGAACATGCAGGTTATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAG 280025 || || || ||| ||| ||| ||| | ||||| || ||||| || || | ||| | | Sbjct 42421 GTATCTGAGCATTCAGCTTACCATAATGGTGACCAGAGTCTCCCCA--GTACCATTATTG 42478 Query 280026 GTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAAT 280085 | | || || |||| ||| |||||| |||| || ||| ||||||||| |||| Sbjct 42479 GAATGGCACAGGATTACGTGGGCAGCAACAACATAAACCTTCTTCAACCAAATGGCCAAT 42538 Query 280086 TTGGTTCTCGT 280096 |||| |||||| Sbjct 42539 TTGGCTCTCGT 42549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186406479431881