Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_024697.1
Length=370920
Score E
Sequences producing significant alignments: (Bits) Value
seq6340 120 7e-22
seq18541 114 3e-20
seq17051 89.7 1e-12
seq12146 89.7 1e-12
seq1052 89.7 1e-12
seq12782 87.8 4e-12
>seq6340
Length=78611
Score = 120 bits (132), Expect = 7e-22
Identities = 162/224 (72%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 279875 GATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTA 279934
|||||| ||||||| || | ||||| | ||| ||| |||||| ||||| || |||
Sbjct 16812 GATGGTCTGAAACCAGGTCAAAGGAAGATCCTTTTCTGTTCTTTCAAGAGAAACTTTGTA 16871
Query 279935 AAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCAC 279994
|||||| | ||||||||||| | |||||||| || || ||| | | ||| |||||
Sbjct 16872 AAGGAAGCTAAAGTTGCTCAGTTTTCTGGTTATGTATCTGAGCATTCGGCTTACCATCAT 16931
Query 279995 GGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAA 280052
||||| || ||||| || || | ||| | || | || || |||| | ||| |
Sbjct 16932 GGTGAGCAGAGTCTCGCCA--GTACCATTATTGGAATGGCACAGGATTATGTGGGCAGCA 16989
Query 280053 ACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGT 280096
||||| |||| || ||| ||||||||| ||||||||| |||||
Sbjct 16990 ACAACATAAACCTTCTTCAACCAAATGGCCAATTTGGTACTCGT 17033
>seq18541
Length=33550
Score = 114 bits (126), Expect = 3e-20
Identities = 162/224 (72%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 279875 GATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGGTA 279934
|||||| ||||||| || | ||||| | ||| ||| |||||| |||| || ||
Sbjct 21911 GATGGTCTGAAACCAGGTCAAAGGAAGATCCTTTTCTGTTCTTTCAAGCGAAACTTTGTT 21970
Query 279935 AAGGAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCATCAC 279994
|||||| | ||||||||||| | |||||||| || || ||| ||| ||| |||||
Sbjct 21971 AAGGAAGCTAAAGTTGCTCAGTTCTCTGGTTATGTATCTGAGCATTCAGCTTACCATCAT 22030
Query 279995 GGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCTTCAA 280052
||||| || ||||| ||| || | ||| | || | || || |||| | ||| |
Sbjct 22031 GGTGAGCAGAGTCTC-GCAA-GTACCATTATTGGAATGGCACAGGATTATGTGGGCAGCA 22088
Query 280053 ACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCGT 280096
||||| |||| |||||| ||||||||| |||||||| |||||
Sbjct 22089 ACAACATAAACCTGCTTCAACCAAATGGCCAATTTGGAACTCGT 22132
>seq17051
Length=68824
Score = 89.7 bits (98), Expect = 1e-12
Identities = 129/182 (71%), Gaps = 0/182 (0%)
Strand=Plus/Plus
Query 305307 GACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGT 305366
|||| |||| ||| || | ||||| ||||| || ||||| |||||||| ||||
Sbjct 49868 GACACTTGATTGATGGAGACTTTGTTCTCTTCAACAGACAACCGAGTCTGCATAAGATGT 49927
Query 305367 CTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGTG 305426
| || |||| || ||| | ||| | | | | || || || || ||| || ||
Sbjct 49928 CCATCATGGGGCACAAAATTAAAATCATGCCATACTCAACCTTCCGCTTGAATTTATCTG 49987
Query 305427 CTTGTACGCCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAAT 305486
| | | || || ||||| ||||||||||||||||| ||||| |||||||| |||||||
Sbjct 49988 TTACTTCCCCATACAATGCAGATTTTGATGGAGATGAGATGAACATGCATGTCCCTCAAT 50047
Query 305487 CA 305488
||
Sbjct 50048 CA 50049
>seq12146
Length=52644
Score = 89.7 bits (98), Expect = 1e-12
Identities = 121/167 (72%), Gaps = 4/167 (2%)
Strand=Plus/Plus
Query 305324 GATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAA 305383
|||| || |||||||| || || || || ||||||||||| || |||| |||||
Sbjct 33525 GATTTTGTACTGTTCAACAGACAGCCTAGTCTTCATAAAATGTCCATCATGGGGCATAAG 33584
Query 305384 GTCAAAGTATTAT--CTGGATTGACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATA 305441
|||| ||||| | | || || ||| | ||| || || | ||||| || |
Sbjct 33585 ATCAAG--ATTATGCCACACTCAACTTTCCGACTCAATTTATCTGTTACCACGCCATACA 33642
Query 305442 ATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488
|||| || |||||||| ||||||||||||||||||||||| || |||
Sbjct 33643 ATGCTGACTTTGATGGGGATGAAATGAATATGCATGTACCCCAGTCA 33689
>seq1052
Length=126806
Score = 89.7 bits (98), Expect = 1e-12
Identities = 118/160 (74%), Gaps = 4/160 (3%)
Strand=Plus/Minus
Query 305331 TTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAG 305390
|||| ||||| || ||||| |||||||| ||||| || |||| || ||| |||||
Sbjct 107369 TTCTCTTCAACAGACAACCGAGTCTGCATAAGATGTCCATCATGGGGCACAAAATCAAA- 107311
Query 305391 TATTAT-CTGGATTGA-CATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGA 305448
|| || | | | | | | || || || ||| || || | | | || || ||||| ||
Sbjct 107310 -ATCATGCCGTACTCAACCTTCCGCTTGAATTTATCTGTTACTTCCCCGTACAATGCAGA 107252
Query 305449 TTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCA 305488
||||||||||||||| ||||| |||||||| ||||| |||
Sbjct 107251 TTTTGATGGAGATGAGATGAACATGCATGTCCCTCAGTCA 107212
>seq12782
Length=73914
Score = 87.8 bits (96), Expect = 4e-12
Identities = 135/191 (71%), Gaps = 4/191 (2%)
Strand=Plus/Plus
Query 279908 TTCAGTTGTTTCAAAAGAAAATTGGTAAAGGAAATTCGTGTTGCTCAGTTAGCAGGTTAT 279967
||| ||| |||||| ||| || || |||||| | ||||||||||| | |||||
Sbjct 42361 TTCTGTTCTTTCAAGCGAACCTTTGTTAAGGAAGCTAAAGTTGCTCAGTTCTCTTGTTAT 42420
Query 279968 GTTTCAGAACATGCAGGTTATCATCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAG 280025
|| || || ||| ||| ||| ||| | ||||| || ||||| || || | ||| | |
Sbjct 42421 GTATCTGAGCATTCAGCTTACCATAATGGTGACCAGAGTCTCCCCA--GTACCATTATTG 42478
Query 280026 GTCTTGCCCAAGATTTTATGGCTTCAAACAACTTAAATCTGCTTTCACCAAATGGTCAAT 280085
| | || || |||| ||| |||||| |||| || ||| ||||||||| ||||
Sbjct 42479 GAATGGCACAGGATTACGTGGGCAGCAACAACATAAACCTTCTTCAACCAAATGGCCAAT 42538
Query 280086 TTGGTTCTCGT 280096
|||| ||||||
Sbjct 42539 TTGGCTCTCGT 42549
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1186406479431881
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |