Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2905 122 6e-23 seq7849 98.7 7e-16 seq892 98.7 7e-16 seq22277 95.1 8e-15 seq21627 89.7 3e-13 seq9252 89.7 3e-13 seq11116 87.8 1e-12 seq2938 86.0 4e-12 seq26701 84.2 1e-11 seq5804 84.2 1e-11 >seq2905 Length=56485 Score = 122 bits (134), Expect = 6e-23 Identities = 155/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || || ||| || || |||||||| |||| ||| |||||| |||| || Sbjct 52744 CACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGTCCGTCCTC 52685 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||||||||||| || |||| |||||||| ||| | || | ||||| ||||| Sbjct 52684 CAGCTGTTTTCCGGCGAAGATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTG 52625 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 ||| || || | |||| ||| | ||||||| ||||| || || | || || || | Sbjct 52624 AATCTT-TGCCTTGACATTGTCGATGGTGTCGGAGGATTCGACCTCTAGGGTAATAGTCT 52566 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || ||||||||||| Sbjct 52565 TCCCCGTTAGGGTTTTCACGAAGATCTGCAT 52535 >seq7849 Length=122270 Score = 98.7 bits (108), Expect = 7e-16 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || ||||||||||||| || || || | || ||||| || ||||||||||| Sbjct 79736 TCCTTCTGGATGTTGTAATCGGCAAGAGTACGGCCATCCTCCAACTGCTTTCCGGCAAAG 79795 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| |||||| ||||| | || | |||||| ||||| || ||| |||| |||| Sbjct 79796 ATCAGACGCTGTTGATCCGGAGGAATACCTTCCTTGTCTTGGATCTTCACTTTC-ACATT 79854 Query 33679 GTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTT 33734 || | || || ||| || || |||| ||||| || || || |||| || || Sbjct 79855 ATCAATTGTATCAGAGCT---CTCAACCTCAAGAGTGATTGTCTTTCCAGTTAGGGTCTT 79911 Query 33735 TACAAAGATCTGCAT 33749 ||||||||||||||| Sbjct 79912 TACAAAGATCTGCAT 79926 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || |||||||||||||| | ||| || || | || || | || |||||||| || Sbjct 79964 TCCTTCTGTATGTTGTAATCAGCGAGGGTACGGCCATCCTCGAGCTGCTTTCCGGCGAAG 80023 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| |||||| ||||| | || | |||||| ||||| || ||| |||| || Sbjct 80024 ATCAGACGCTGTTGATCAGGAGGAATACCTTCCTTGTCTTGGATCTTCGCCTTCACGTTA 80083 Query 33679 GTCACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACA 33738 | |||||| || || || | |||||| ||||| || |||| |||||||| Sbjct 80084 TCAATTGTGTCGGAGCTCTCAACCTCGAGCGTGATTGTTTTCCCAGTTAGGGTTTTTACG 80143 Query 33739 AAGATCTGCAT 33749 ||||||||||| Sbjct 80144 AAGATCTGCAT 80154 >seq892 Length=123481 Score = 98.7 bits (108), Expect = 7e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || || || ||| || || |||||||| |||| ||| ||||| |||| || Sbjct 88274 CACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGACCGTCCTC 88333 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || ||||||||||| || |||| |||||||| || | || | || |||||||| Sbjct 88334 CAGCTGTTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGGAATGCCCTCTTTGTCTTG 88393 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || || | | |||| ||| | |||||| |||||| || || | || || || | Sbjct 88394 GATCTT-GGCCTTGACATTGTCGATGGTGTCAGATGATTCAACCTCTAGGGTTATGGTCT 88452 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || |||| ||||| || ||||||||||| Sbjct 88453 TCCCCGTTAGGGTTTTCACGAAGATCTGCAT 88483 >seq22277 Length=3790 Score = 95.1 bits (104), Expect = 8e-15 Identities = 151/213 (71%), Gaps = 8/213 (4%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || || || || ||||||||||| | ||| ||||| | || ||| Sbjct 1968 ACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCC 1909 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| |||| | ||||||||| | || | || || ||||| | Sbjct 1908 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGA 1849 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 ||||| || | |||| ||| | ||| || ||| ||| || || | || ||||| Sbjct 1848 ATTTT-TGCCTTGACATTGTCGATGGTATCAGAGCT---TTCGACCTCGAGGGTAATCGT 1793 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || | ||||| |||||||||||||| Sbjct 1792 TTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 1760 >seq21627 Length=4779 Score = 89.7 bits (98), Expect = 3e-13 Identities = 150/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 ||||| || || || || || || ||||||||||| | ||| ||||| | || || Sbjct 2814 ACCAAGTGGAGGGTCGATTCCTTCTGGATGTTGTAATCCGCGAGGGTGCGGCCATCCTCA 2873 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||||| |||||||| |||| | ||||||||| | || | || || ||||| | Sbjct 2874 AGCTGTTTGCCGGCAAAGATCAGCCTCTGCTGATCCGGTGGGATCCCCTCCTTGTCCTGA 2933 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTC---GCTTGATTCCACGTCAACCGTGATCGT 33716 ||||| || | |||| ||| | ||| || ||| ||| || || | || ||||| Sbjct 2934 ATTTT-TGCCTTGACATTGTCAATGGTATCAGAGCT---TTCGACCTCGAGGGTAATCGT 2989 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || | ||||| |||||||||||||| Sbjct 2990 TTTCCCGGTGAGGGTTTTGACAAAGATCTGCAT 3022 >seq9252 Length=190322 Score = 89.7 bits (98), Expect = 3e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 |||| ||||| || || || || || || |||||||| |||| || || || || Sbjct 60268 CGTAGCACCAGGTGGAGCGTTGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTTCGGCCG 60209 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | |||||||||||| || |||| || || || || | || | || |||||| Sbjct 60208 TCTTCTAGTTGTTTTCCGGCGAAGATCAGGCGTTGTTGGTCCGGAGGTATGCCCTCTTTG 60149 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || ||| || | | |||| ||| | ||||||| || || || || | || || Sbjct 60148 TCCTGAATCTT-GGCCTTGACATTGTCGATGGTGTCGGAGGACTCGACCTCTAGGGTTAT 60090 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 ||| || || ||||| ||||| || ||||||||||| Sbjct 60089 CGTCTTCCCGGTTAAGGTTTTCACGAAGATCTGCAT 60054 >seq11116 Length=53430 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || |||||||| |||| ||||| || |||| || | |||||||||||| || Sbjct 28154 TCCTTCTGGATGTTGTAGTCGGCCAGTGTTCGGCCGTCTTCAAGTTGTTTTCCGGCGAAG 28095 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| || || || || | || | || |||||||| ||| || | | |||| Sbjct 28094 ATCAGGCGTTGTTGGTCCGGAGGTATTCCCTCTTTGTCCTGAATCTT-GGCCTTGACATT 28036 Query 33679 GTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTAC 33737 ||| | |||||| || ||||| || | || ||||| || || |||| ||||| || Sbjct 28035 GTCGATGGTGTCTGAGGACTCCACCTCTAGGGTTATCGTCTTCCCGGTTAGGGTTTTCAC 27976 Query 33738 AAAGATCTGCAT 33749 ||||||||||| Sbjct 27975 GAAGATCTGCAT 27964 >seq2938 Length=28785 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||||| || || || ||| || || ||||| ||||| | Sbjct 10956 ACCACCACGCAGACGGAGCACCAAGTGCAGGGTCGACTCCTTCTGAATGTTATAATCAGC 10897 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || |||||| | || ||||| || || || ||||||||||| | |||||| || | || Sbjct 10896 CAGGGTGCGTCCATCCTCCAACTGCTTCCCAGCAAAAATCAATCTCTGCTGGTCCGGTGG 10837 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCC 33699 | || || ||||| || ||| | | ||||| ||| | |||||| | | | || Sbjct 10836 GATTCCCTCCTTGTCTTGGATCTTC-GCCTTAACATTGTCAATGGTGTC-CGAGCTCTCA 10779 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | || || || || || || | || || ||||| |||||||| Sbjct 10778 ACCTCCAGGGTAATTGTCTTGCCGGTGAGGGTCTTGACAAAAATCTGCAT 10729 >seq26701 Length=70828 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 33559 TCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAA 33618 || || || || ||||| || | || ||||| | || || | |||||||| ||||| Sbjct 32923 TCCTTCTGAATATTGTAGTCAGCCAGGGTGCGGCCATCCTCAAGCTGTTTTCCAGCAAAG 32864 Query 33619 ATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATA 33678 |||| | ||||||||| | || | ||||| ||||| ||| || ||| | ||| Sbjct 32863 ATCAGCCTCTGCTGATCCGGTGGGATCCCTTCCTTGTCTTGAATCTTGGCTTTGA-CATT 32805 Query 33679 GTCAC-GGTGTC---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTT 33734 |||| |||||| |||| ||||| || | |||||| || || ||||| | || || Sbjct 32804 GTCAATGGTGTCAGAGCTT---TCCACCTCGAGCGTGATGGTCTTGCCTGTGAGGGTCTT 32748 Query 33735 TACAAAGATCTGCAT 33749 |||||||||||||| Sbjct 32747 AACAAAGATCTGCAT 32733 >seq5804 Length=153150 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || ||||| | ||| | ||||| || || ||| ||||| || |||||||| |||| | Sbjct 32560 CCTCCTCTGAGACGGAGCACCAGGTGGAGGGTGGATTCTTTCTGAATGTTGTAGTCGGCG 32501 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || |||| || | || ||||||||||| || | | ||||||||| | || Sbjct 32500 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGATCCGGAGGG 32441 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | ||| | ||||||| ||||| Sbjct 32440 ATTCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCCAC 32382 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | ||||| |||||||||||||| Sbjct 32381 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTTTTCACAAAGATCTGCAT 32334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328596953536320