Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq16707 581 1e-161 seq647 248 3e-61 seq24083 158 4e-34 seq20 158 4e-34 seq574 154 4e-33 seq6008 123 7e-24 seq10199 118 3e-22 seq6733 100 8e-17 seq4124 87.8 5e-13 >seq16707 Length=103149 Score = 581 bits (644), Expect = 1e-161 Identities = 724/982 (74%), Gaps = 10/982 (1%) Strand=Plus/Minus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 23062 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 23003 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || || || | |||| || ||||| || ||||| || || || ||||| Sbjct 23002 CC-TACCTTATTAACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGT 22944 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || || || || ||| | ||||| |||||||| || || Sbjct 22943 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTAT 22884 Query 19690 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 19747 || || ||| | |||| | | ||| || || || | ||||| |||||||| ||| Sbjct 22883 CTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATCTGG 22826 Query 19748 GAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19807 ||||| || ||||||||||| | ||||| || || || | | || | || | Sbjct 22825 GAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTA 22766 Query 19808 CACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 19867 |||||| | |||| | | ||| ||||| || ||||||||||| || | || || Sbjct 22765 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTG 22706 Query 19868 GGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTC 19927 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 22705 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT- 22647 Query 19928 TTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTATGCCTTTGGGTATCTC 19986 ||||| | | ||||| ||||||| || || ||||| |||| ||||||||| || || || Sbjct 22646 TTTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATC 22587 Query 19987 GGGTACGTTCAACTACATGTTGGTATTCCAAGCCGAACATAACATTCTCATGCACCCGTT 20046 ||||| ||||||| ||| | |||||||| || || |||||||| || ||||| || || Sbjct 22586 TGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATT 22527 Query 20047 CCACATGCTTGGTGTGGCTGGTGTATTCGGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 |||||| | ||||| |||||||||||||| || || ||||||||||| ||||| ||||| Sbjct 22526 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTC 22467 Query 20107 GCTTGTTACGTCCTCGCTTGTGC-GTGAGACTACTGAACAGGAAAGTCAGAACTATGGTT 20165 | || || || | | ||| | | || || |||||| | ||| | || | |||| Sbjct 22466 CTTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTT 22408 Query 20166 ACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTTGGAC 20225 ||| ||||| ||||| ||||| || ||||| || || |||||||||||||| ||||| | Sbjct 22407 ACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCC 22348 Query 20226 GTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTG 20285 | || ||||||||||| ||| ||| ||||| |||||| ||||||||||| | |||| Sbjct 22347 GATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTG 22288 Query 20286 CCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATC 20345 | ||||| || ||||||||||||||| |||| || || || ||| ||||| || |||| Sbjct 22287 CTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATC 22228 Query 20346 TGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTT 20405 | ||||| ||||| || ||||| || | | || | | | ||||| || ||| |||||| Sbjct 22227 TAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTT 22168 Query 20406 GGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTC 20465 ||||||| || |||| ||||||||||| || | || || ||||||||||| ||||||| Sbjct 22167 GGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 22108 Query 20466 ATAACTTCCCACTTGACCTTGC 20487 |||||||||| || ||||| || Sbjct 22107 ATAACTTCCCTCTAGACCTAGC 22086 >seq647 Length=36880 Score = 248 bits (274), Expect = 3e-61 Identities = 366/512 (71%), Gaps = 5/512 (1%) Strand=Plus/Minus Query 19598 TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGAACCCGTA 19657 || ||| | || |||||||| ||||| ||||| || |||||| || || || || || Sbjct 14163 TTTATTTTCGCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGCCTGTT 14104 Query 19658 TCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 19717 || || || ||||| |||||||| || || || || | | | ||| | | Sbjct 14103 TCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTACTTCTACA 14044 Query 19718 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTAC 19777 || || || | ||||| ||||| || |||||||| || ||||||||||| | ||| Sbjct 14043 GCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTGATGAATGGTTATAC 13984 Query 19778 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATC-TATGCTTACAT 19836 || || || || | | || | || | |||||| | |||| | | || |||||| Sbjct 13983 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTG-TTACAT 13925 Query 19837 GGGACGAGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTA 19896 ||| || |||||||||||||||| || | || ||| |||| |||| |||||| || Sbjct 13924 GGGTCGTGAGTGGGAACTTAGCTTCCGTTTGGGTATGCAACCTTTGATTGTTGTTGCATA 13865 Query 19897 CTCTGCTCCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTA 19955 || |||| |||||||| || |||| || ||||| | ||||||| ||||| | || | Sbjct 13864 TTCAGCTCTTGTTGCAGCTGCTACTGCTGT-TTTCTTGATCTACCCAATTGGTTAAGGAA 13806 Query 19956 GCTTCTCCGATGCTATGCCTTTGGGTATCTCGGGTACGTTCAACTACATGTTGGTATTCC 20015 | || || ||| ||||||| | || ||||| ||||| ||||||| |||| | ||| ||| Sbjct 13805 GTTTTTCTAATGGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTACTCC 13746 Query 20016 AAGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTTGGTGTGGCTG-GTGTATTC 20074 | || || || ||||| || |||||| | || |||||| | ||| | |||| | |||||| Sbjct 13745 ATGCTGAGCACAACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTATTC 13686 Query 20075 GGTGGGTCACTATTCAGTGCGATGCACGGTTC 20106 || || || | ||||||||| ||||| ||||| Sbjct 13685 GGCGGCTCCCCATTCAGTGCTATGCATGGTTC 13654 >seq24083 Length=1989 Score = 158 bits (174), Expect = 4e-34 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 20248 TTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 20307 ||| ||||| |||||| |||| |||||||| ||||| ||||| || ||||| || || Sbjct 721 TTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 780 Query 20308 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCA 20367 |||| |||| || || | || ||||| || || || || |||||||| || ||||| Sbjct 781 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 840 Query 20368 GTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGC 20427 | | | || | | || ||||| ||| |||| |||||||| || | || ||||| Sbjct 841 ATATGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGC 900 Query 20428 TAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 |||||| || | || || ||||||||||| ||||||||||||||||| || ||||| || Sbjct 901 TAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 960 >seq20 Length=236725 Score = 158 bits (174), Expect = 4e-34 Identities = 179/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 20248 TTTCAACAATAGCCGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTG 20307 ||| ||||| |||||| |||| |||||||| ||||| ||||| || ||||| || || Sbjct 78392 TTTGAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTG 78451 Query 20308 GTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCA 20367 |||| |||| || || | || ||||| || || || || |||||||| || ||||| Sbjct 78452 GTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCA 78511 Query 20368 GTCCCTTCTCGACAACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGC 20427 | | | || | | || ||||| ||| |||| |||||||| || | || ||||| Sbjct 78512 ATTTGTAGTTGATAGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGC 78571 Query 20428 TAATCTCGGGTTTGAGGTGATGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 |||||| || | || || ||||||||||| ||||||||||||||||| || ||||| || Sbjct 78572 TAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 78631 >seq574 Length=41708 Score = 154 bits (170), Expect = 4e-33 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 20268 TACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTT 20327 |||| |||||||| ||||| ||||| || ||||| || |||||| |||| || || | Sbjct 2270 TACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCA 2329 Query 20328 CTACAATGGCGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATG 20387 || ||||| || || || || |||||||| || ||||| || | | || | | | Sbjct 2330 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAG 2389 Query 20388 GTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGA 20447 | ||||| ||| |||| |||||||| || | || ||||||||||| || | || || | Sbjct 2390 GCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTTA 2449 Query 20448 TGCATGAACGGAATGCTCATAACTTCCCACTTGACCTTGC 20487 |||||||||| ||||||||||||||||| || ||||| || Sbjct 2450 TGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGC 2489 >seq6008 Length=80333 Score = 123 bits (136), Expect = 7e-24 Identities = 154/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 20277 TCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGG 20336 |||| ||||| ||||| || ||||| || |||||| |||| || || | || |||| Sbjct 50677 TCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGG 50618 Query 20337 CGTTTAATCTGAACGGTTTCAACTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCA 20396 | || || || || |||||||| || ||||| | | | | | | || ||||| | Sbjct 50617 CTTTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGGTAGTCAAGGCCGTGTAA 50558 Query 20397 TTGATACTTGGGCTGACATTCTCAATCGTGCTAATCTCGGGTTTGAGGTGATGCATGAAC 20456 || |||| |||||||| || | || ||||||||||| || | | || ||||||||| Sbjct 50557 TTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGTAAGTTGTGCATGAAC 50498 Query 20457 GGAATGCTCATAACTTCCCACTTGACCTTGC 20487 | ||||||||||||||||| || ||||| || Sbjct 50497 GTAATGCTCATAACTTCCCTCTAGACCTAGC 50467 >seq10199 Length=21994 Score = 118 bits (130), Expect = 3e-22 Identities = 193/276 (70%), Gaps = 24/276 (9%) Strand=Plus/Plus Query 20162 GGTTACAAGTTTGGGCAAGAAGAAGAGACCTATAACATCGTAGCCGCTCATGGTTACTTT 20221 || |||| || || ||||| ||||| || ||||| |||||||| |||||||| || Sbjct 14228 GGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGCTA---- 14283 Query 20222 GGACGTTTGATCTTCCAATACGCTTCTTTCAACAATAGCCGTTCTCTACACTTCTTCCTT 20281 |||||||||||||| ||| ||||||||| | |||| |||| |||||||| Sbjct 14284 ------TTGATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTCTTCCTA 14337 Query 20282 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 20341 |||| ||||| || ||||| || |||||| |||| || || | || ||||| || Sbjct 14338 ACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 14397 Query 20342 AATCTGAACGGTTTCAA-CTTTAACCAGTCCCTTCTCGACAACAATGGTCGTGTCATTGA 20400 || || || || |||| || | ||| | | | ||| || ||||| ||| | Sbjct 14398 AACCTAAATGG--TCAATCTGT----AGT---TGATAGTCAA----GGCCGTGTAATTAA 14444 Query 20401 TACTTGGGCTGACATTCTCAATCGTGCTAATCTCGG 20436 || |||||||| || | || ||||||||||| || Sbjct 14445 CACCTGGGCTGATATCATTAACCGTGCTAATCTTGG 14480 >seq6733 Length=89479 Score = 100 bits (110), Expect = 8e-17 Identities = 223/329 (68%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 19532 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 19591 |||| |||||| |||| ||||||| ||||||| || | || || || | Sbjct 8761 AACCATCTTTACATTGGACGGTTTGGTGTTTTGATGATCCC-TACCTTATTAACCGCAAC 8819 Query 19592 ATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGTTGACATTGATGGCATCCGCGA 19650 |||| || ||||| || |||||||| ||||| ||||| || |||||||| || || || Sbjct 8820 TTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGGATTCGTGA 8879 Query 19651 ACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGA- 19709 || || || || || |||||||||||||| || || || || ||| | |||| | Sbjct 8880 GCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCAGGTGCCATTATTCCTAC 8939 Query 19710 -GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAA 19768 | ||| || || || | ||||| |||||||| | |||||| || |||||||| Sbjct 8940 TTCTGCA--GCTATAGGTTTGCACTTTTACCCAATCT-GGAAGCGGCATCCGTTGATGAA 8996 Query 19769 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTAT 19828 ||| | |||||| || || | | | | || | |||||| | |||| | | Sbjct 8997 TGGTGGTCCAACGGTGGTCCTTATGAGATAATTGTTCTACACTTCTTACTTGGTGTAGCT 9056 Query 19829 GCTTACATGGGACGAGAGTGGGAACTTAG 19857 |||||||| || ||||| ||||||| Sbjct 9057 TGTTACATGGATCGTGAGTGAAAACTTAG 9085 >seq4124 Length=71480 Score = 87.8 bits (96), Expect = 5e-13 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 19844 GAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCT 19903 |||||||||||||| | || | || ||| | | ||||||| |||||| || || ||| Sbjct 19251 GAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACTTTGGATTGCTGTTGCATATTCAGCT 19192 Query 19904 CCGGTTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTC 19962 || |||||||| || ||| || ||||| | ||||||| ||||||| || || || || Sbjct 19191 CCTGTTGCAGCTGCTATTGCTGT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTC 19133 Query 19963 CGATGCTATGCC 19974 |||| |||||| Sbjct 19132 TGATGGTATGCC 19121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148781574854418