Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq16707 520 3e-143 seq647 217 4e-52 seq24083 150 5e-32 seq20 150 5e-32 seq574 147 6e-31 seq10199 118 3e-22 seq6008 118 3e-22 seq6733 104 7e-18 >seq16707 Length=103149 Score = 520 bits (576), Expect = 3e-143 Identities = 709/982 (72%), Gaps = 8/982 (1%) Strand=Plus/Minus Query 28639 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 28698 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 23062 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 23003 Query 28699 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGT 28757 || | || || || | |||| || ||||| || ||||| || || || ||||| Sbjct 23002 CC-TACCTTATTAACCGCAACTTCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGT 22944 Query 28758 TGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCAT 28817 || |||||||| || || || ||||| |||| | | || || |||||||| || || Sbjct 22943 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTAT 22884 Query 28818 ATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 28875 || || ||| | | || | | ||| || || || | ||||| |||||||| ||| Sbjct 22883 CTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATCTGG 22826 Query 28876 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 28935 ||||| || ||||||||||| | ||||| || || || | | || | || | Sbjct 22825 GAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTA 22766 Query 28936 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 28995 |||||| | |||| || | ||| ||||| || ||||||||||| || | || || Sbjct 22765 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTG 22706 Query 28996 GGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTT 29055 || ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| ||| Sbjct 22705 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 22646 Query 29056 TTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACGCGATGCCTTTGGGTATTTCA 29115 ||| | | ||||| | |||||||| ||| || | |||||||| || || || Sbjct 22645 TTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCTGATGGTATGCCTTTAGGAATATCT 22586 Query 29116 GGCACCTTCAACTACATGCTGGTGTTCCAAGCCGAACATAACATTCTCATGCACCCGTTC 29175 || || ||||||| ||| | || ||||| || || |||||||| || ||||| || || Sbjct 22585 GGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCATTT 22526 Query 29176 CACATGCTGGGCGTTGCTGGAGTGTTCGGTGGCTCGCTATTTAGTGCAATGCACGGTTCG 29235 |||||| | || || ||||| || ||||| || || ||||| ||||| ||||| ||||| Sbjct 22525 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGTTCC 22466 Query 29236 CTTGTCACGTCCTCGCTTGTGC-GTGAGACGACTGAAGACATCTCTCAGAACTATGGTTA 29294 | || || || | | ||| | | || || |||||| || ||| || | ||||| Sbjct 22465 TTGGTAACCTC-TAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGGTTA 22407 Query 29295 CAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACG 29354 || ||||| ||||| ||||| |||||||| || || |||||||| ||||| ||||| || Sbjct 22406 CAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTGGCCGCTCATGGTTATTTTGGCCG 22347 Query 29355 TTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTTGCTGC 29414 || ||||||||||||||| ||| || || |||||| ||||||||||| | ||||| Sbjct 22346 ATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGCTGC 22287 Query 29415 CTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTTAATCT 29474 ||||| || ||||||||||||||| |||| || || || ||| ||||| || ||||| Sbjct 22286 TTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAATCT 22227 Query 29475 GAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAATACTTG 29534 ||||| || || || ||||| || | | || | | | ||||| || ||||||||||| Sbjct 22226 AAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATACTTG 22167 Query 29535 GGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCATGAGCGTAATGCTCA 29594 ||||||| | |||| || ||||| || || | ||||| |||||||| ||||||||||| Sbjct 22166 GGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCA 22107 Query 29595 TAACTTCCCACTTGATCTGGCT 29616 ||||||||| || || || ||| Sbjct 22106 TAACTTCCCTCTAGACCTAGCT 22085 >seq647 Length=36880 Score = 217 bits (240), Expect = 4e-52 Identities = 357/511 (70%), Gaps = 3/511 (1%) Strand=Plus/Minus Query 28726 TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGAACCTGTC 28785 || ||| | || |||||||| || || ||||| || |||||| || || || ||||| Sbjct 14163 TTTATTTTCGCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGCCTGTT 14104 Query 28786 GCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAGCAGCAAT 28845 ||||| ||| || || |||||||| || || || || | | | || | | Sbjct 14103 TCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTACTTCTACA 14044 Query 28846 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 28905 || || || | ||||| ||||| || |||||||| || ||||||||||| | ||| Sbjct 14043 GCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTGATGAATGGTTATAC 13984 Query 28906 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTC-TATGCTTACAT 28964 || || || || | | || | || | |||||| | |||| || | || |||||| Sbjct 13983 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTG-TTACAT 13925 Query 28965 GGGACGCGAGTGGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATA 29024 ||| || |||||||||||||||| || | || ||| || | |||| ||| ||||| Sbjct 13924 GGGTCGTGAGTGGGAACTTAGCTTCCGTTTGGGTATGCAACCTTTGATTGTTGTTGCATA 13865 Query 29025 CTCAGCTCCCGTCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTC 29084 ||||||| || ||||| || |||| |||||| | |||||||| | ||| |||| Sbjct 13864 TTCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAG 13805 Query 29085 TTTTAGCGACGCGATGCCTTTGGGTATTTCAGGCACCTTCAACTACATGCTGGTGTTCCA 29144 |||| | | |||||| | || || || || || ||||||| |||| | || |||| Sbjct 13804 TTTTTCTAATGGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTACTCCA 13745 Query 29145 AGCCGAACATAACATTCTCATGCACCCGTTCCACATGCTGGGCGTTGCTG-GAGTGTTCG 29203 || || || ||||| || |||||| | || |||||| | || | |||| | || |||| Sbjct 13744 TGCTGAGCACAACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTATTCG 13685 Query 29204 GTGGCTCGCTATTTAGTGCAATGCACGGTTC 29234 | ||||| | ||| ||||| ||||| ||||| Sbjct 13684 GCGGCTCCCCATTCAGTGCTATGCATGGTTC 13654 >seq24083 Length=1989 Score = 150 bits (166), Expect = 5e-32 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29389 CGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTG 29448 |||||| |||| |||||||| ||||| ||||| || ||||| || |||||| |||| || Sbjct 734 CGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 793 Query 29449 GGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGAC 29508 || | || ||||| || || || || ||||| || || ||||| | | | || Sbjct 794 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATATGTAGTTGAT 853 Query 29509 AACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTT 29568 | | || ||||| |||||||| ||||||||| | | || || ||||| || || | Sbjct 854 AGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATG 913 Query 29569 GAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 ||||| |||||||| |||||||||||||||||||| || || || ||| Sbjct 914 GAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 961 >seq20 Length=236725 Score = 150 bits (166), Expect = 5e-32 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 29389 CGTTCTCTACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTG 29448 |||||| |||| |||||||| ||||| ||||| || ||||| || |||||| |||| || Sbjct 78405 CGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 78464 Query 29449 GGCGTTTCTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGAC 29508 || | || ||||| || || || || ||||| || || ||||| | | | || Sbjct 78465 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGAT 78524 Query 29509 AACAATGGTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTT 29568 | | || ||||| |||||||| ||||||||| | | || || ||||| || || | Sbjct 78525 AGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATG 78584 Query 29569 GAAGTAATGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 ||||| |||||||| |||||||||||||||||||| || || || ||| Sbjct 78585 GAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 78632 >seq574 Length=41708 Score = 147 bits (162), Expect = 6e-31 Identities = 165/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 29396 TACACTTCTTCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTT 29455 |||| |||||||| ||||| ||||| || ||||| || |||||| |||| || || | Sbjct 2270 TACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCA 2329 Query 29456 CTACAATGGCGTTTAATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATG 29515 || ||||| || || || || ||||| || || ||||| || | | || | | | Sbjct 2330 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAG 2389 Query 29516 GTCGTGTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAA 29575 | ||||| |||||||| ||||||||| | | || || ||||| || || | ||||| | Sbjct 2390 GCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTTA 2449 Query 29576 TGCATGAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 ||||||| |||||||||||||||||||| || || || ||| Sbjct 2450 TGCATGAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 2490 >seq10199 Length=21994 Score = 118 bits (130), Expect = 3e-22 Identities = 195/284 (69%), Gaps = 22/284 (8%) Strand=Plus/Plus Query 29290 GGTTACAAGTTTGGACAAGAAGAAGAGACTTATAACATCGTAGCCGCTCACGGTTACTTT 29349 || |||| || || ||||| ||||| |||||||| |||||||| ||||| || || Sbjct 14228 GGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGCTA---- 14283 Query 29350 GGACGTTTGATCTTCCAATATGCTTCTTTCAATAATAGCCGTTCTCTACACTTCTTCCTT 29409 |||||||||||||||||| |||||| || | |||| |||| |||||||| Sbjct 14284 ------TTGATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTCTTCCTA 14337 Query 29410 GCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGGCGTTT 29469 |||| ||||| || ||||| || |||||| |||| || || | || ||||| || Sbjct 14338 ACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 14397 Query 29470 AATCTGAACGGTTTTAACTTTAACCAGTCGCTTCTCGACAACAATGGTCGTGTCATTAAT 29529 || || || || | || | || | | | | ||| || ||||| ||||| Sbjct 14398 AACCTAAATGG--------TCAATCTGTAGTTGATAGTCAA----GGCCGTGTAATTAAC 14445 Query 29530 ACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGT 29573 || ||||||||| | | || || ||||| || || | ||||| Sbjct 14446 ACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATCGAAGT 14489 >seq6008 Length=80333 Score = 118 bits (130), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 29405 TCCTTGCTGCCTGGCCGGTGGTAGGGATTTGGTTCGCTGCCTTGGGCGTTTCTACAATGG 29464 |||| ||||| ||||| || ||||| || |||||| |||| || || | || |||| Sbjct 50677 TCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGG 50618 Query 29465 CGTTTAATCTGAACGGTTTTAACTTTAACCA----GTCGCTTCTCGACAACAATGGTCGT 29520 | || || || || ||||| || || ||||| || | | | | ||| || ||| Sbjct 50617 CTTTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGGTAGTCAA----GGCCGT 50562 Query 29521 GTCATTAATACTTGGGCTGATGTTCTCAATCGCGCTAACCTCGGCTTTGAAGTAATGCAT 29580 || |||||||| ||||||||| | | || || ||||| || || | |||| ||||| Sbjct 50561 GTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGTAAGTTGTGCAT 50502 Query 29581 GAGCGTAATGCTCATAACTTCCCACTTGATCTGGCT 29616 || |||||||||||||||||||| || || || ||| Sbjct 50501 GAACGTAATGCTCATAACTTCCCTCTAGACCTAGCT 50466 >seq6733 Length=89479 Score = 104 bits (114), Expect = 7e-18 Identities = 224/329 (68%), Gaps = 7/329 (2%) Strand=Plus/Plus Query 28660 AACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATTCCGTGTCTCCTTGCAGCCACC 28719 |||| |||||| |||| ||||||| ||||||| || | || || || | Sbjct 8761 AACCATCTTTACATTGGACGGTTTGGTGTTTTGATGATCCC-TACCTTATTAACCGCAAC 8819 Query 28720 ATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGTTGACATTGATGGCATCCGCGA 28778 |||| || ||||| || |||||||| || || ||||| || |||||||| || || || Sbjct 8820 TTCTGTATTTATTATCGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGGATTCGTGA 8879 Query 28779 ACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGA- 28837 ||||| ||||| ||| || ||||||||||| || || || || ||| | | || | Sbjct 8880 GCCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCAGGTGCCATTATTCCTAC 8939 Query 28838 -GCAGCAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAA 28896 | ||| || || || | ||||| |||||||| | |||||| || |||||||| Sbjct 8940 TTCTGCA--GCTATAGGTTTGCACTTTTACCCAATCT-GGAAGCGGCATCCGTTGATGAA 8996 Query 28897 TGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTAT 28956 ||| | |||||| || || | | | | || | |||||| | |||| || | Sbjct 8997 TGGTGGTCCAACGGTGGTCCTTATGAGATAATTGTTCTACACTTCTTACTTGGTGTAGCT 9056 Query 28957 GCTTACATGGGACGCGAGTGGGAACTTAG 28985 |||||||| || ||||| ||||||| Sbjct 9057 TGTTACATGGATCGTGAGTGAAAACTTAG 9085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146619061263466