Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq16707 571 2e-158 seq647 268 3e-67 seq24083 150 5e-32 seq20 150 5e-32 seq574 147 6e-31 seq6733 138 3e-28 seq6008 118 3e-22 seq10199 102 2e-17 seq4124 86.0 2e-12 >seq16707 Length=103149 Score = 571 bits (632), Expect = 2e-158 Identities = 720/978 (74%), Gaps = 16/978 (2%) Strand=Plus/Minus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || ||||||||||| ||||| ||||| || ||||||| | Sbjct 23061 ACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCC 23002 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || || | || ||| | ||| || ||||| |||||||| ||||| ||||| || Sbjct 23001 C-TACCTTATTAACCGCAACT-TCTGTATTTATTATCGCCTTCATCGCTGCCCCTCCAGT 22944 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || ||||||||| | || | | ||||| |||||||| || || Sbjct 22943 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTACGGAAACAATATTAT 22884 Query 18909 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966 || || ||| | |||| | | ||| || || || | ||||| |||||||| ||| Sbjct 22883 CTCTGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCCAATCTGG 22826 Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19026 ||||| || ||||||||||| | ||||| || || || | | || | || | Sbjct 22825 GAAGCGGCATCTGTTGATGAATGGTTATACAATGGCGGTCCTTATGAGCTAATTGTTCTA 22766 Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | |||| || | ||| ||||| || ||||||||||| || | || || Sbjct 22765 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTGAGTTTCCGTCTG 22706 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGGTC 19146 || ||||| ||||||||| |||||| || |||||||||||||| || || |||| || Sbjct 22705 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 22646 Query 19147 TTCCTTGTCTATCCATTTGGTCAAGG---TTCCTTTAGCGACGCTATGCCTTTGGGTATT 19203 ||| | | || || |||||||||| || || | || | ||||||||| || || Sbjct 22645 TTCTTGATTTACCCTATTGGTCAAGGAAGTTTCTCT---GATGGTATGCCTTTAGGAATA 22589 Query 19204 AGTGGTACGTTCAACTACATGCTTGTATTCCAGGCTGAACATAACATCCTCATGCACCCG 19263 |||||| ||||||| ||| ||||||||||||| || ||||||||||| ||||| || Sbjct 22588 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCAGAGCATAACATCCTTATGCATCCA 22529 Query 19264 TTCCACATGCTCGGTGTCGCTGGTGTGTTCGGCGGGTCACTATTTAGTGCGATGCACGGT 19323 || |||||| | ||||| |||||||| |||||||| || ||||| ||||| ||||| ||| Sbjct 22528 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGTTCCCTATTCAGTGCTATGCATGGT 22469 Query 19324 TCGCTTGTTACGTCCTCGCTTG-TGCGTGAAACTACTGAAGAGGTATCTCAGAACTATGG 19382 || |||| || || | ||| | | ||||| |||||| | | |||| || | || Sbjct 22468 TC-CTTGGTAACCTCTAGTTTGATCAGGGAAACCACTGAAAACGAATCTGCTAATGAGGG 22410 Query 19383 CTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTTGG 19442 |||| ||||| ||||| ||||| |||||||| ||||| || |||||||| |||||||| Sbjct 22409 TTACAGATTTGGTCAAGAGGAAGAAACTTATAATATTGTGGCCGCTCATGGTTATTTTGG 22350 Query 19443 TCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTGGC 19502 || | || ||||| || || || ||||| |||||| |||| ||||| ||||| Sbjct 22349 CCGATTAATCTTCCAATATGCTAGTTTTAACAACTCTCGTTCTTTACACTTCTTCTTGGC 22290 Query 19503 TGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTCAA 19562 |||||||||||| || || |||||||| | || | || | || || ||||| ||||| Sbjct 22289 TGCTTGGCCTGTAGTAGGGATTTGGTTCACTGCTTTAGGTATTAGTACTATGGCTTTCAA 22230 Query 19563 CTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGATAC 19622 | || || || || || ||||| || | |||| | | | ||||| || ||| |||| Sbjct 22229 TCTAAACGGATTCAATTTCAACCAATCTGTAGTTGATAGCCAAGGTCGCGTTATTAATAC 22170 Query 19623 TTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAATGC 19682 ||||||||| || |||| |||||||| || || | || || ||||| ||||||||||| Sbjct 22169 TTGGGCTGATATCATCAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGC 22110 Query 19683 TCATAACTTCCCACTTGA 19700 |||||||||||| || || Sbjct 22109 TCATAACTTCCCTCTAGA 22092 >seq647 Length=36880 Score = 268 bits (296), Expect = 3e-67 Identities = 398/558 (71%), Gaps = 5/558 (1%) Strand=Plus/Minus Query 18817 TTCATTATTGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGCATCCGCGAGCCTGTT 18876 || ||| | |||||||||||||| ||||| ||||| |||||| || || ||||||||| Sbjct 14163 TTTATTTTCGCCTTCATTGCTGCTCCTCCAGTAGATGCTGATGGTATTCGTGAGCCTGTT 14104 Query 18877 GCAGGCAGTCTTCTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAGCAGCAAT 18936 | || ||| ||||| |||||||| || || || || | | | ||| | | Sbjct 14103 TCTGGATCTCTACTTTACGGAAACAATATTATCTCAGGTGTCATTAATCCTACTTCTACA 14044 Query 18937 GCCATCGGACTACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTAC 18996 || || || | ||||| ||||| || |||||||| || ||||||||||| | ||| Sbjct 14043 GCTATAGGTTTGCACTTTTACCCGATCTGGGAAGCGGCATCCATTGATGAATGGTTATAC 13984 Query 18997 AACGGGGGACCGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTC-TATGCTTACAT 19055 || || || || | | || | || | |||||| | |||| || | || |||||| Sbjct 13983 AATGGCGGTCCTTATGAGCTAATTGTTCTACACTTCTTGCTTGGTGTAGTGTG-TTACAT 13925 Query 19056 GGGACGCGAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTA 19115 ||| || |||||||||||||||| || | || |||| |||| |||| |||||| || Sbjct 13924 GGGTCGTGAGTGGGAACTTAGCTTCCGTTTGGGTATGCAACCTTTGATTGTTGTTGCATA 13865 Query 19116 CTCAGCTCCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTC 19175 ||||||| |||||| || || |||| || ||| | |||| ||| ||||| |||| Sbjct 13864 TTCAGCTCTTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTTAAGGAAG 13805 Query 19176 CTTTAGCGACGCTATGCCTTTGGGTATTAGTGGTACGTTCAACTACATGCTTGTATTCCA 19235 ||| | | ||||||| | || || |||||| ||||||| |||| | ||| |||| Sbjct 13804 TTTTTCTAATGGTATGCCTGTAGGAATCTCTGGTACTTTCAACTTCATGATCGTACTCCA 13745 Query 19236 GGCTGAACATAACATCCTCATGCACCCGTTCCACATGCTCGGTGTCGCTG-GTGTGTTCG 19294 ||||| || |||||||| |||||| | || |||||| | ||| | |||| | || |||| Sbjct 13744 TGCTGAGCACAACATCCTTATGCACACATTTCACATGTTAGGTATAGCTGTGGGTATTCG 13685 Query 19295 GCGGGTCACTATTTAGTGCGATGCACGGTTCGCTTGTTACGTCCTCGCTTG-TGCGTGAA 19353 |||| || | ||| ||||| ||||| ||||| ||| || | || | ||| | | ||| Sbjct 13684 GCGGCTCCCCATTCAGTGCTATGCATGGTTC-TTTGGTAACTTCTAGTTTGATCAGGGAA 13626 Query 19354 ACTACTGAAGAGGTATCT 19371 || || ||| | | |||| Sbjct 13625 ACCACAGAAAATGAATCT 13608 >seq24083 Length=1989 Score = 150 bits (166), Expect = 5e-32 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 19480 CGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTT 19539 |||||| |||||||||| | |||||||||||||| || || || ||||| | || | Sbjct 734 CGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 793 Query 19540 GGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGAC 19599 || | ||||| ||||| |||||| | ||||| || || || ||||| | | |||| Sbjct 794 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATATGTAGTTGAT 853 Query 19600 AACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTT 19659 | | || ||||| ||| |||| |||||||| || | || |||||||| || || | Sbjct 854 AGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATG 913 Query 19660 GAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 || || ||||| ||||||||||||||||||||||| || || Sbjct 914 GAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 954 >seq20 Length=236725 Score = 150 bits (166), Expect = 5e-32 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 19480 CGTTCTCTACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTT 19539 |||||| |||||||||| | |||||||||||||| || || || ||||| | || | Sbjct 78405 CGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTA 78464 Query 19540 GGGGTAAGCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGAC 19599 || | ||||| ||||| |||||| | ||||| || || || ||||| | | |||| Sbjct 78465 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGAT 78524 Query 19600 AACAATGGTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTT 19659 | | || ||||| ||| |||| |||||||| || | || |||||||| || || | Sbjct 78525 AGTCAAGGCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATG 78584 Query 19660 GAGGTAATGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 || || ||||| ||||||||||||||||||||||| || || Sbjct 78585 GAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 78625 >seq574 Length=41708 Score = 147 bits (162), Expect = 6e-31 Identities = 161/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 19487 TACATTTCTTTTTGGCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAA 19546 |||||||||| | |||||||||||||| || || || ||||| | || | || | | Sbjct 2270 TACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCA 2329 Query 19547 GCACCATGGCATTCAACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATG 19606 |||| ||||| |||||| | ||||| || || || ||||| || | |||| | | | Sbjct 2330 GCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAG 2389 Query 19607 GTCGTGTCATTGATACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAA 19666 | ||||| ||| |||| |||||||| || | || |||||||| || || | || || | Sbjct 2390 GCCGTGTAATTAATACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGGAAGTTA 2449 Query 19667 TGCACGAACGTAATGCTCATAACTTCCCACTTGA 19700 |||| ||||||||||||||||||||||| || || Sbjct 2450 TGCATGAACGTAATGCTCATAACTTCCCTCTAGA 2483 >seq6733 Length=89479 Score = 138 bits (152), Expect = 3e-28 Identities = 250/357 (70%), Gaps = 9/357 (3%) Strand=Plus/Plus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||| | |||| | || || |||| |||||| || || ||||||| || Sbjct 8734 TTCTGTAACTAGATAACTAACACTGAAAACCATCTTTACATTGGACGGTTTGGTGTTTTG 8793 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || || | || ||| | ||| || ||||| |||||||||||||| | Sbjct 8794 ATGATCCC-TACCTTATTAACCGCAACT-TCTGTATTTATTATCGCCTTCATTGCTGCTC 8851 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || ||||||||| | || ||| ||||||||||||| Sbjct 8852 CTCCAGTAGATATTGATGGGATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACA 8911 Query 18902 ACATCATATCGGGAGCCGTCGTTCCGA--GCAGCAATGCCATCGGACTACACTTCTACCC 18959 | || || || || ||| | |||| | | ||| || || || | ||||| ||||| Sbjct 8912 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCA--GCTATAGGTTTGCACTTTTACCC 8969 Query 18960 AATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGT 19019 ||| | |||||| || ||||||||||| | |||||| || || | | | | Sbjct 8970 AATCT-GGAAGCGGCATCCGTTGATGAATGGTGGTCCAACGGTGGTCCTTATGAGATAAT 9028 Query 19020 GGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAG 19076 || | |||||| | |||| || | |||||||| || ||||| ||||||| Sbjct 9029 TGTTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGATCGTGAGTGAAAACTTAG 9085 >seq6008 Length=80333 Score = 118 bits (130), Expect = 3e-22 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 19501 GCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTC 19560 |||||||||||||| || || || ||||| | || | || | ||||| ||||| ||| Sbjct 50672 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 50613 Query 19561 AACTTGAATGGCTTTAACTTTAACCAGTCCCTTCTTGACAACAATGGTCGTGTCATTGAT 19620 ||| | ||||| || || || ||||| | | ||| | | || ||||| ||| || Sbjct 50612 AACCTAAATGGTTTCAATTTCAACCAATTTGTAGTTGGTAGTCAAGGCCGTGTAATTAAT 50553 Query 19621 ACTTGGGCTGACATTCTCAATCGTGCTAACCTCGGCTTTGAGGTAATGCACGAACGTAAT 19680 || |||||||| || | || |||||||| || || | | || |||| ||||||||| Sbjct 50552 ACCTGGGCTGATATCATTAACCGTGCTAATCTTGGTATGTAAGTTGTGCATGAACGTAAT 50493 Query 19681 GCTCATAACTTCCCACTTGA 19700 |||||||||||||| || || Sbjct 50492 GCTCATAACTTCCCTCTAGA 50473 >seq10199 Length=21994 Score = 102 bits (112), Expect = 2e-17 Identities = 136/191 (71%), Gaps = 10/191 (5%) Strand=Plus/Plus Query 19381 GGCTACAAGTTTGGGCAAGAAGAAGAGACTTATAACATTGTTGCTGCTCATGGGTATTTT 19440 ||||||| || || ||||| ||||| |||||||| || || ||||||||||| |||| Sbjct 14228 GGCTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGCTATTG- 14286 Query 19441 GGTCGGCTTATTTTCCAGTACGCATCCTTCAACAATAGCCGTTCTCTACATTTCTTTTTG 19500 || ||||| || || |||||||| | |||| |||||||||| | Sbjct 14287 ---------ATCTTCCAATATGCTAGTTTCAACAACTCTCTTTCTTTACATTTCTTCCTA 14337 Query 19501 GCTGCTTGGCCTGTGGTTGGCATTTGGTTTGCCGCCCTTGGGGTAAGCACCATGGCATTC 19560 ||||||||||||| || || || ||||| | || | || | ||||| ||||| ||| Sbjct 14338 ACTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 14397 Query 19561 AACTTGAATGG 19571 ||| | ||||| Sbjct 14398 AACCTAAATGG 14408 >seq4124 Length=71480 Score = 86.0 bits (94), Expect = 2e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 19063 GAGTGGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCT 19122 |||||||||||||| | || | || ||||| | ||||||| |||||| || |||||| Sbjct 19251 GAGTGGGAACTTAGTTTCCGTTTGGGTATGCGACTTTGGATTGCTGTTGCATATTCAGCT 19192 Query 19123 CCTGTTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGG 19172 |||||||| || || ||| || ||| | |||| ||| |||||||||| Sbjct 19191 CCTGTTGCAGCTGCTATTGCTGTTTTCTTGATCTACCCAATTGGTCAAGG 19142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141104011809618