Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq7849 98.7 9e-16
>seq7849
Length=122270
Score = 98.7 bits (108), Expect = 9e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987
|||| || || || |||||||| || | |||||| ||| |||||||| || ||||
Sbjct 79959 TTGATTCCTTCTGTATGTTGTAATCAGCGAGGGTACGGCCATCCTCGAGCTGCTTTCCGG 80018
Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047
|||| |||||||||||||| ||||| || ||||| || || || || ||||
Sbjct 80019 CGAAGATCAGACGCTGTTGATCAGGAGGAATACCTTCCTTGTCTTGGATCTTCGCCTTCA 80078
Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107
| || | || |||| ||| || |||| ||| | ||||| ||||| || ||||
Sbjct 80079 CGTTATCAATTGTGTCGGAGCTCTCAACCTCGAGCGTGATTGTTTTCCCAGTTAGGGTTT 80138
Query 132108 TTATGAAAATCTGCATG 132124
||| ||| |||||||||
Sbjct 80139 TTACGAAGATCTGCATG 80155
Score = 98.7 bits (108), Expect = 9e-16
Identities = 141/196 (72%), Gaps = 2/196 (1%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTTCGAGCTGTTTACCGGA 131988
||||| ||||| ||||||||||| | || | ||||| || ||||||||||| ||||
Sbjct 80189 GACTCCTTTTGGATGTTGTAGTC-CGCAAGAGTACGGCCGTCCTCGAGCTGTTTTCCGGC 80247
Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048
|||| || ||||| ||||| ||||| || ||||| || || |||||| || |
Sbjct 80248 GAAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCTTGTCTTGAATTTTGGCCTTGAC 80307
Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108
| || | ||||| | ||| || |||| ||| | || || ||||| || |||||
Sbjct 80308 ATTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGATTGTCTTGCCAGTTAGGGTTTT 80367
Query 132109 TATGAAAATCTGCATG 132124
|| ||| |||||||||
Sbjct 80368 TACGAAGATCTGCATG 80383
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/195 (70%), Gaps = 2/195 (1%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATG-GTACGCGAATCTTCGAGCTGTTTACCGGA 131988
||||| || || ||||| ||||| | || | || || ||| ||||||||||| || |
Sbjct 81101 GACTCCTTCTGGATGTTATAGTC-CGCAAGAGTGCGGCCATCCTCGAGCTGTTTTCCTGC 81159
Query 131989 ATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAA 132048
|||| |||||||| ||||| ||||| ||||||||||| || ||||| ||| |
Sbjct 81160 GAAGATCAGACGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCTTTGAC 81219
Query 132049 CTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 132108
| || | || |||| ||| || |||| || | || || || || || |||||
Sbjct 81220 GTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGGTTAGGGTTTT 81279
Query 132109 TATGAAAATCTGCAT 132123
| ||| ||||||||
Sbjct 81280 CACGAAGATCTGCAT 81294
Score = 82.4 bits (90), Expect = 7e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||| |||||||||| | ||||||| || || ||||||||||| || || ||| |
Sbjct 79484 CGCAGCACCAAATGTAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCCAGAGTCCGCCCA 79543
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|| || | || || || | |||| || | ||||||||| || || || || ||||||
Sbjct 79544 TCCTCCAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGTGGAATCCCCTCTTTA 79603
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||| ||| |||| | || | ||||| | ||| || |||| ||| |
Sbjct 79604 TCCTGAATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTCTCAACCTCGAGCGTGATT 79663
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || || || || ||||| | || || |||||
Sbjct 79664 GTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCAT 79698
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || ||||| ||||| | || || ||| ||||||||||| || |
Sbjct 80417 GACTCCTTCTGGATGTTATAGTCTGCAAGAGTGCGGCCATCCTCGAGCTGTTTTCCTGCG 80476
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || ||||| ||||| ||||| || ||||| || || |||||| || |
Sbjct 80477 AAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCTTGTCTTGAATTTTGGCCTTGACA 80536
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | ||||| | ||| || |||| ||| | || || ||||| || ||||||
Sbjct 80537 TTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGATTGTCTTGCCAGTTAGGGTTTTT 80596
Query 132110 ATGAAAATCTGCATG 132124
| ||| |||||||||
Sbjct 80597 ACGAAGATCTGCATG 80611
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || ||||| ||||| | || || ||| ||||||||||| || |
Sbjct 80645 GACTCCTTCTGGATGTTATAGTCTGCAAGAGTGCGGCCATCCTCGAGCTGTTTTCCTGCG 80704
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || ||||| ||||| ||||| || ||||| || || |||||| || |
Sbjct 80705 AAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCTTGTCTTGAATTTTGGCCTTGACA 80764
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | ||||| | ||| || |||| ||| | || || ||||| || ||||||
Sbjct 80765 TTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGATTGTCTTGCCAGTTAGGGTTTTT 80824
Query 132110 ATGAAAATCTGCATG 132124
| ||| |||||||||
Sbjct 80825 ACGAAGATCTGCATG 80839
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
||||| || || ||||| ||||| | || || ||| ||||||||||| || |
Sbjct 80873 GACTCCTTCTGGATGTTATAGTCTGCAAGAGTGCGGCCATCCTCGAGCTGTTTTCCTGCG 80932
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| || ||||| ||||| ||||| || ||||| || || |||||| || |
Sbjct 80933 AAGATCAGGCGCTGCTGATCCGGAGGAATACCTTCCTTGTCTTGAATTTTGGCCTTGACA 80992
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | ||||| | ||| || |||| ||| | || || ||||| || ||||||
Sbjct 80993 TTATCAATTGTATCTGAGCTCTCGACCTCGAGCGTGATTGTCTTGCCAGTTAGGGTTTTT 81052
Query 132110 ATGAAAATCTGCATG 132124
| ||| |||||||||
Sbjct 81053 ACGAAGATCTGCATG 81067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476452005901560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |