Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6526 333 4e-85 seq8535 318 8e-81 seq3997 313 4e-79 seq13045 176 6e-38 seq12741 86.0 9e-11 >seq6526 Length=28452 Score = 333 bits (368), Expect = 4e-85 Identities = 411/550 (75%), Gaps = 19/550 (3%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| |||| || | ||||||| |||| |||| || ||| ||||| |||||| || Sbjct 22485 AACCCAGACCGATTCTGCATGTTCCCGATCCAGTACCCGCAGATCTGGGAGATGTAC-AA 22427 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCG-AC--ACGGT 1455850 ||||| || || || || ||||| || |||||||| || || | ||| | || ||| Sbjct 22426 GAAGGCTGAAGCGTCATTCTGGACGGCGGAGGAGGTGGATCT-GTCGCAGGACCAACG-- 22370 Query 1455851 CCACTGGGT---GTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907 |||||||| | | || | || ||||||| || |||||||| |||||||||||||| Sbjct 22369 CCACTGGGACGAGGCCCTCACCGCCGACGAGAAGCACTTCATCAAACACGTCCTCGCCTT 22310 Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967 || ||||||| ||| |||||||| ||||||||| |||||||| || ||||| |||| Sbjct 22309 CTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGCCGTTTCATGAAGGAGG 22251 Query 1455968 TCCAA-TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCAC 1456026 | ||| ||||| || || || || ||||| ||||| ||||||||||| ||||||||| Sbjct 22250 TACAAGTTGCC-GAAGCGCGGGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCAC 22192 Query 1456027 TCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCAC 1456086 || |||| ||| |||||| |||| ||||| ||| |||||||| ||||||||||| | Sbjct 22191 TCCGAAATGTACAGCCTCCTGCTCGAATCCTACATCAGGGACCCGGCCGAGAAGGACCGC 22132 Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146 ||||| | ||| ||||| || | || | ||| ||||||||| | |||||| |||| Sbjct 22131 CTCTTCCACGCGATCGAGACCATCCCTTGCGTGGAAAAAAAGGCCAAGTGGGCGTTGAAA 22072 Query 1456147 TGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCG 1456205 |||||| || || | | || ||||| | ||| ||| || || || ||| Sbjct 22071 TGGATCGAC-----GGTTCAGAATCGTTCGCCGAAAGACTCATCGCGTTCGCGTGCTTCG 22017 Query 1456206 AGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCA 1456265 |||| ||||| ||||| || || |||||||| || ||||||||||| |||||||| | | Sbjct 22016 AGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAA 21957 Query 1456266 TGCCCGGTCT 1456275 |||| ||||| Sbjct 21956 TGCCGGGTCT 21947 >seq8535 Length=22056 Score = 318 bits (352), Expect = 8e-81 Identities = 394/530 (74%), Gaps = 17/530 (3%) Strand=Plus/Minus Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812 ||||||| || | |||| || ||| ||||| |||||| || |||||||| || || || Sbjct 7172 TGTTCCCGATTCAGTACCCGCAGATCTGGGAGATGTAC-AAGAAGGCCGAAGCGTCGTTC 7114 Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCG-AC--ACGGTCCACTGGGT---GTCGCTG 1455866 ||||| || ||||| || || || | ||| | || ||| |||||||| | | || Sbjct 7113 TGGACGGCGGAGGAAGTGGATCT-GTCGCAGGACCAACG--CCACTGGGATGAGGCCCTC 7057 Query 1455867 AGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGG 1455926 | || ||||||| || ||||||| |||||||||||||| || ||||||| ||||| Sbjct 7056 ACCGCCGACGAGAAGCACTTCATCACCCACGTCCTCGCCTTCTT-CGCCGCCTCAGATGG 6998 Query 1455927 CATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACG 1455986 |||||| ||||||||| || ||||| || ||||| ||||| ||| | | || || || Sbjct 6997 CATCGTCCTCGAGAACCTCGCTGGCCGATTCATGAAGGAGGTACAAGTCGCCGAAGCGCG 6938 Query 1455987 TTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCT 1456046 || ||||| ||||| ||||||||||| ||||||||||| |||| ||| ||||| Sbjct 6937 CGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCCT 6878 Query 1456047 GATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACAC 1456106 | |||| ||||| |||||||| ||| ||||||| ||| |||||| | ||| ||||| || Sbjct 6877 GCTCGAATCCTACATCAAGGACTCGGCCGAGAAGAACCGCCTCTTCCACGCGATCGAGAC 6818 Query 1456107 GGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCT 1456166 || || | ||| |||||||| | |||||| ||||||||||| || || | Sbjct 6817 CGTCCCTTGCGTGGAAAAAAAGGCAAAGTGGGCGTTGAAGTGGATCGAC-----GGTTCA 6763 Query 1456167 CGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGC 1456225 | || ||||| ||||| ||| || || |||| ||||| ||||| ||||| || Sbjct 6762 GAATCGTTCGCCGAAAGGCTCATCGCATTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGA 6703 Query 1456226 AGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 || |||||||| || ||||||||||| |||||||| | ||||| ||||| Sbjct 6702 AGCTTCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCT 6653 >seq3997 Length=108068 Score = 313 bits (346), Expect = 4e-79 Identities = 401/547 (73%), Gaps = 13/547 (2%) Strand=Plus/Minus Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793 ||||| |||| || | ||||||| |||| |||| | ||| ||||| |||||| || Sbjct 90377 AACCCTGACCGATTCTGCATGTTCCCGATCCAGTACCCGTAGATCTGGGAGATGTAC-AA 90319 Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853 ||||| ||||| || || ||||| || |||||||| |||||| ||| ||| ||| Sbjct 90318 GAAGGCAGAGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCTGACCTTCGCCA 90259 Query 1455854 CTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910 ||||| | || | || ||||||| | || |||||| |||||||||||||| || Sbjct 90258 CTGGGACCAAACCCTAACCGCCGACGAGAGGCACTTCATCTCCCACGTCCTCGCCTTCTT 90199 Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970 ||| ||| ||| |||||||| |||||| || ||||||||||| ||||| ||||||| Sbjct 90198 -CGCAGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGCCGCTTCATGAAGGAGGTCC 90140 Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030 | | | ||||| || || || || ||||||||||| ||||| ||||||||||| | Sbjct 90139 AGGTCGCTGAGGCCCGCGCTTTCTATGGCTTCCAGATCGCGATCGAGAACATCCACTCCG 90080 Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090 | | ||| ||||| |||| ||||| |||||||| | ||||||| ||| ||||| Sbjct 90079 AGATGTACAGCCTCCTCCTCGAATCCTACATCAAGGACTCCTCCGAGAAGCACCGCCTCT 90020 Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150 | | ||| ||||| || | || | ||| ||| |||||| | ||||| |||| |||| Sbjct 90019 TCCACGCAATCGAGACCATCCCTTGCGTGGTGAAGAAGGCCAAGTGGGCCCTGAAATGGA 89960 Query 1456151 TCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGG 1456208 || || ||| || | || |||||||| ||||| | || || |||| |||| Sbjct 89959 TC------GACGGCTCAGAATCGTTCGCCGAGCGTCTCGTGGCGTTCGCGTGCGTGGAGG 89906 Query 1456209 GCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268 | ||||| ||||| || || |||||||| || |||||||||||||||||||| | |||| Sbjct 89905 GGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTCAAGAAGCGCGGGTTAATGC 89846 Query 1456269 CCGGTCT 1456275 | || || Sbjct 89845 CGGGACT 89839 >seq13045 Length=6999 Score = 176 bits (194), Expect = 6e-38 Identities = 308/438 (70%), Gaps = 19/438 (4%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGC 1455773 |||||| || ||| | |||||| | || || ||| | |||| |||| ||||||| Sbjct 1412 CGAGCCCCTACTGGCCCCGAACCCGGATCGATTCTGTATT-TTCCAGATCCAGTACCAGC 1354 Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833 ||| || || ||||| || ||||| || || || || | ||| | ||||| | ||| Sbjct 1353 AGATCTGAGAGCTGTAC-AAGAAGGCGGAAGCGTCATTCTAGACGGTGTAGGAGCTGGAC 1295 Query 1455834 CTCGGCGCCGACA-CGGTCCACTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCAT 1455889 ||| |||| || | ||| |||||| | || | | ||||||| | || ||||| Sbjct 1294 CTCTCCGCCAACCTCCGTC-ACTGGGACCAAACCCTAACCCCCGACGAGGGGCACTTCAT 1236 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 | |||||||| ||||| || ||||||| ||| |||||||| | ||||||| |||| Sbjct 1235 CTCTCACGTCCTAGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCAAGAACCTCGCCG 1177 Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009 ||||||| ||||| |||||||| | | ||||| || || ||||| |||||||||| Sbjct 1176 GCCGCTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCG 1117 Query 1456010 CCATCGAAAACATCCACTCTGA-------AACCTACTC--GCTCCTGATCGACACCTACG 1456060 || |||| ||||||||||| || | ||| ||| | | || |||| ||||| Sbjct 1116 CCGTCGAGAACATCCACTCCGAGATGTATAGCCTTCTCCAGGT-CTCCTCGAATCCTACA 1058 Query 1456061 TCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGA 1456120 || |||| | ||||||| | | |||||| | ||| ||||| || || | | |||| Sbjct 1057 TCTAGGAATCATACGAGAAGCATCGCCTCTTCCACGCGATCGAGACCGTCCTTTGCGTGA 998 Query 1456121 GGAAAAAGGCCGACTGGG 1456138 ||| |||||| | |||| Sbjct 997 AGAAGAAGGCCAAGTGGG 980 >seq12741 Length=59280 Score = 86.0 bits (94), Expect = 9e-11 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 |||| ||||||||| |||||||| ||||| || | | ||| ||| || | |||| || Sbjct 28674 ATCTTCAAGGTGCTGAAGCAGGTACACCCT-GA--CATCGGG--ATC-TCGAGCAAGGCC 28727 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACC-GAGGCCGG 725029 ||| ||||||||| || |||||||||| |||| ||| ||| |||||| Sbjct 28728 ATGGGTATCATGAACAGCTTCATCAACGACATCTTCGAGAAACTCG-CACAAGAGGCCTC 28786 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 | || || | | ||||||| ||||||| | | || ||||||||||| || || Sbjct 28787 CAGGCTCGCCAGGTACAACAAGAAGCCCACGATCACCTCTCGTGAGATCCAGACGGCGGT 28846 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | | ||| | ||| || || ||||| | ||||||||| || ||||| || Sbjct 28847 GAGGCTGGTGTTGCCTGGAGAGCTGGCAAAGCACGCCGTGTCGGAGGGGAC 28897 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7175233910436802