Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq6526 333 4e-85
seq8535 318 8e-81
seq3997 313 4e-79
seq13045 176 6e-38
seq12741 86.0 9e-11
>seq6526
Length=28452
Score = 333 bits (368), Expect = 4e-85
Identities = 411/550 (75%), Gaps = 19/550 (3%)
Strand=Plus/Minus
Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793
||||| |||| || | ||||||| |||| |||| || ||| ||||| |||||| ||
Sbjct 22485 AACCCAGACCGATTCTGCATGTTCCCGATCCAGTACCCGCAGATCTGGGAGATGTAC-AA 22427
Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCG-AC--ACGGT 1455850
||||| || || || || ||||| || |||||||| || || | ||| | || |||
Sbjct 22426 GAAGGCTGAAGCGTCATTCTGGACGGCGGAGGAGGTGGATCT-GTCGCAGGACCAACG-- 22370
Query 1455851 CCACTGGGT---GTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTT 1455907
|||||||| | | || | || ||||||| || |||||||| ||||||||||||||
Sbjct 22369 CCACTGGGACGAGGCCCTCACCGCCGACGAGAAGCACTTCATCAAACACGTCCTCGCCTT 22310
Query 1455908 TTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGG 1455967
|| ||||||| ||| |||||||| ||||||||| |||||||| || ||||| ||||
Sbjct 22309 CTT-CGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGGCCGTTTCATGAAGGAGG 22251
Query 1455968 TCCAA-TTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCAC 1456026
| ||| ||||| || || || || ||||| ||||| ||||||||||| |||||||||
Sbjct 22250 TACAAGTTGCC-GAAGCGCGGGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCAC 22192
Query 1456027 TCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCAC 1456086
|| |||| ||| |||||| |||| ||||| ||| |||||||| ||||||||||| |
Sbjct 22191 TCCGAAATGTACAGCCTCCTGCTCGAATCCTACATCAGGGACCCGGCCGAGAAGGACCGC 22132
Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146
||||| | ||| ||||| || | || | ||| ||||||||| | |||||| ||||
Sbjct 22131 CTCTTCCACGCGATCGAGACCATCCCTTGCGTGGAAAAAAAGGCCAAGTGGGCGTTGAAA 22072
Query 1456147 TGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCG 1456205
|||||| || || | | || ||||| | ||| ||| || || || |||
Sbjct 22071 TGGATCGAC-----GGTTCAGAATCGTTCGCCGAAAGACTCATCGCGTTCGCGTGCTTCG 22017
Query 1456206 AGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCA 1456265
|||| ||||| ||||| || || |||||||| || ||||||||||| |||||||| | |
Sbjct 22016 AGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAA 21957
Query 1456266 TGCCCGGTCT 1456275
|||| |||||
Sbjct 21956 TGCCGGGTCT 21947
>seq8535
Length=22056
Score = 318 bits (352), Expect = 8e-81
Identities = 394/530 (74%), Gaps = 17/530 (3%)
Strand=Plus/Minus
Query 1455753 TGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTT 1455812
||||||| || | |||| || ||| ||||| |||||| || |||||||| || || ||
Sbjct 7172 TGTTCCCGATTCAGTACCCGCAGATCTGGGAGATGTAC-AAGAAGGCCGAAGCGTCGTTC 7114
Query 1455813 TGGACCGCCGAGGAGGTCGACCTCGGCGCCG-AC--ACGGTCCACTGGGT---GTCGCTG 1455866
||||| || ||||| || || || | ||| | || ||| |||||||| | | ||
Sbjct 7113 TGGACGGCGGAGGAAGTGGATCT-GTCGCAGGACCAACG--CCACTGGGATGAGGCCCTC 7057
Query 1455867 AGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGG 1455926
| || ||||||| || ||||||| |||||||||||||| || ||||||| |||||
Sbjct 7056 ACCGCCGACGAGAAGCACTTCATCACCCACGTCCTCGCCTTCTT-CGCCGCCTCAGATGG 6998
Query 1455927 CATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACG 1455986
|||||| ||||||||| || ||||| || ||||| ||||| ||| | | || || ||
Sbjct 6997 CATCGTCCTCGAGAACCTCGCTGGCCGATTCATGAAGGAGGTACAAGTCGCCGAAGCGCG 6938
Query 1455987 TTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCT 1456046
|| ||||| ||||| ||||||||||| ||||||||||| |||| ||| |||||
Sbjct 6937 CGCCTTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCCT 6878
Query 1456047 GATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACAC 1456106
| |||| ||||| |||||||| ||| ||||||| ||| |||||| | ||| ||||| ||
Sbjct 6877 GCTCGAATCCTACATCAAGGACTCGGCCGAGAAGAACCGCCTCTTCCACGCGATCGAGAC 6818
Query 1456107 GGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCT 1456166
|| || | ||| |||||||| | |||||| ||||||||||| || || |
Sbjct 6817 CGTCCCTTGCGTGGAAAAAAAGGCAAAGTGGGCGTTGAAGTGGATCGAC-----GGTTCA 6763
Query 1456167 CGACACTTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGGGCATCTTTTTCTCGGGC 1456225
| || ||||| ||||| ||| || || |||| ||||| ||||| ||||| ||
Sbjct 6762 GAATCGTTCGCCGAAAGGCTCATCGCATTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGA 6703
Query 1456226 AGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275
|| |||||||| || ||||||||||| |||||||| | ||||| |||||
Sbjct 6702 AGCTTCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCT 6653
>seq3997
Length=108068
Score = 313 bits (346), Expect = 4e-79
Identities = 401/547 (73%), Gaps = 13/547 (2%)
Strand=Plus/Minus
Query 1455734 AACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTACCAA 1455793
||||| |||| || | ||||||| |||| |||| | ||| ||||| |||||| ||
Sbjct 90377 AACCCTGACCGATTCTGCATGTTCCCGATCCAGTACCCGTAGATCTGGGAGATGTAC-AA 90319
Query 1455794 AAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCA 1455853
||||| ||||| || || ||||| || |||||||| |||||| ||| ||| |||
Sbjct 90318 GAAGGCAGAGGCGTCGTTCTGGACGGCGGAGGAGGTGGACCTCTCCGCTGACCTTCGCCA 90259
Query 1455854 CTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTT 1455910
||||| | || | || ||||||| | || |||||| |||||||||||||| ||
Sbjct 90258 CTGGGACCAAACCCTAACCGCCGACGAGAGGCACTTCATCTCCCACGTCCTCGCCTTCTT 90199
Query 1455911 TCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCC 1455970
||| ||| ||| |||||||| |||||| || ||||||||||| ||||| |||||||
Sbjct 90198 -CGCAGCCTCCGACGGCATCGTCCTCGAGAATCTCGCCGGCCGCTTCATGAAGGAGGTCC 90140
Query 1455971 AATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTG 1456030
| | | ||||| || || || || ||||||||||| ||||| ||||||||||| |
Sbjct 90139 AGGTCGCTGAGGCCCGCGCTTTCTATGGCTTCCAGATCGCGATCGAGAACATCCACTCCG 90080
Query 1456031 AAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCT 1456090
| | ||| ||||| |||| ||||| |||||||| | ||||||| ||| |||||
Sbjct 90079 AGATGTACAGCCTCCTCCTCGAATCCTACATCAAGGACTCCTCCGAGAAGCACCGCCTCT 90020
Query 1456091 TTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGA 1456150
| | ||| ||||| || | || | ||| ||| |||||| | ||||| |||| ||||
Sbjct 90019 TCCACGCAATCGAGACCATCCCTTGCGTGGTGAAGAAGGCCAAGTGGGCCCTGAAATGGA 89960
Query 1456151 TCAACAAGGAGGGCCTCGACAC-TTTGCCGAGCGGCTCGTCGGCTTTGC-CGCGTCGAGG 1456208
|| || ||| || | || |||||||| ||||| | || || |||| ||||
Sbjct 89959 TC------GACGGCTCAGAATCGTTCGCCGAGCGTCTCGTGGCGTTCGCGTGCGTGGAGG 89906
Query 1456209 GCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGC 1456268
| ||||| ||||| || || |||||||| || |||||||||||||||||||| | ||||
Sbjct 89905 GGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTCAAGAAGCGCGGGTTAATGC 89846
Query 1456269 CCGGTCT 1456275
| || ||
Sbjct 89845 CGGGACT 89839
>seq13045
Length=6999
Score = 176 bits (194), Expect = 6e-38
Identities = 308/438 (70%), Gaps = 19/438 (4%)
Strand=Plus/Minus
Query 1455715 CGAGCCGCTGCTGCGCGATAACCCGAACCGCTT-TGTCCTGTTCCCCATCCGCTACCAGC 1455773
|||||| || ||| | |||||| | || || ||| | |||| |||| |||||||
Sbjct 1412 CGAGCCCCTACTGGCCCCGAACCCGGATCGATTCTGTATT-TTCCAGATCCAGTACCAGC 1354
Query 1455774 GGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGAC 1455833
||| || || ||||| || ||||| || || || || | ||| | ||||| | |||
Sbjct 1353 AGATCTGAGAGCTGTAC-AAGAAGGCGGAAGCGTCATTCTAGACGGTGTAGGAGCTGGAC 1295
Query 1455834 CTCGGCGCCGACA-CGGTCCACTGGGTGT---CGCTGAGCGACGACGAGCGCCATTTCAT 1455889
||| |||| || | ||| |||||| | || | | ||||||| | || |||||
Sbjct 1294 CTCTCCGCCAACCTCCGTC-ACTGGGACCAAACCCTAACCCCCGACGAGGGGCACTTCAT 1236
Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949
| |||||||| ||||| || ||||||| ||| |||||||| | ||||||| ||||
Sbjct 1235 CTCTCACGTCCTAGCCTTCTT-CGCCGCCTCCGACGGCATCGTCCTCAAGAACCTCGCCG 1177
Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009
||||||| ||||| |||||||| | | ||||| || || ||||| ||||||||||
Sbjct 1176 GCCGCTTCATGAAGGAGGTCCAGGTCGCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCG 1117
Query 1456010 CCATCGAAAACATCCACTCTGA-------AACCTACTC--GCTCCTGATCGACACCTACG 1456060
|| |||| ||||||||||| || | ||| ||| | | || |||| |||||
Sbjct 1116 CCGTCGAGAACATCCACTCCGAGATGTATAGCCTTCTCCAGGT-CTCCTCGAATCCTACA 1058
Query 1456061 TCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGA 1456120
|| |||| | ||||||| | | |||||| | ||| ||||| || || | | ||||
Sbjct 1057 TCTAGGAATCATACGAGAAGCATCGCCTCTTCCACGCGATCGAGACCGTCCTTTGCGTGA 998
Query 1456121 GGAAAAAGGCCGACTGGG 1456138
||| |||||| | ||||
Sbjct 997 AGAAGAAGGCCAAGTGGG 980
>seq12741
Length=59280
Score = 86.0 bits (94), Expect = 9e-11
Identities = 162/231 (70%), Gaps = 8/231 (3%)
Strand=Plus/Plus
Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970
|||| ||||||||| |||||||| ||||| || | | ||| ||| || | |||| ||
Sbjct 28674 ATCTTCAAGGTGCTGAAGCAGGTACACCCT-GA--CATCGGG--ATC-TCGAGCAAGGCC 28727
Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACC-GAGGCCGG 725029
||| ||||||||| || |||||||||| |||| ||| ||| ||||||
Sbjct 28728 ATGGGTATCATGAACAGCTTCATCAACGACATCTTCGAGAAACTCG-CACAAGAGGCCTC 28786
Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089
| || || | | ||||||| ||||||| | | || ||||||||||| || ||
Sbjct 28787 CAGGCTCGCCAGGTACAACAAGAAGCCCACGATCACCTCTCGTGAGATCCAGACGGCGGT 28846
Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140
| | ||| | ||| || || ||||| | ||||||||| || ||||| ||
Sbjct 28847 GAGGCTGGTGTTGCCTGGAGAGCTGGCAAAGCACGCCGTGTCGGAGGGGAC 28897
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7175233910436802
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