Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq6300 134 2e-26 seq10 134 2e-26 seq3997 105 9e-18 seq8535 95.1 2e-14 seq6526 87.8 2e-12 seq15419 84.2 3e-11 >seq6300 Length=25064 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | |||||||| |||| | |||| ||||| |||| | |||| Sbjct 13282 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGAAGCATTGGAACCACACCA 13341 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| |||||| || || | || || |||||| || ||| Sbjct 13342 TTGGATGTCCCATTTGTTCCACGAATATAGCTGCCGGTAGCACGGATATTATGAACAGAA 13401 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || |||| ||| | |||||| |||||| || |||||||| Sbjct 13402 ACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCTTTCAAGGTATCATATATT 13461 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || ||||| |||||| ||||| Sbjct 13462 CCTTCAATGCTGTCATCTTTCATG 13485 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050 || || |||||||| | ||||| ||||| |||||||||||| | | ||| | || || Sbjct 13733 GTCCCTGCATTAAAAAGAGTAGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 13792 Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110 || |||| ||| | || | ||||| || || || || | || || | ||||||| Sbjct 13793 TAAGTTTTGATAACAGAATAGATATCATCCTTGTGGATCCCAACAGCAACCCTCATCAAC 13852 Query 70111 ATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168 || || ||||| | ||| || | ||| | | || |||||||| ||| || | || | Sbjct 13853 ATGTGTTGAGGCCTTTCAACAACCTTTCCT--TGTACTTTCAACAAGTAAGACCTCTCAA 13910 Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 | || || || ||||| || | || |||||||| || || || || Sbjct 13911 GTGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATTAT 13959 >seq10 Length=262601 Score = 134 bits (148), Expect = 2e-26 Identities = 152/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | |||||||| ||| | |||| ||||| |||| || |||| Sbjct 128810 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACACCA 128751 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | |||||||||||| ||||||||| ||| | || || |||||| || ||| Sbjct 128750 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGGATATTATGAACAGAG 128691 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 ||||| |||||||| || ||| ||| | |||||| |||||| || |||||||| Sbjct 128690 AGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATATT 128631 Query 69931 CCCTCTATGCTATCATCTATCATG 69954 || || || || ||||| ||||| Sbjct 128630 CCTTCAATACTGTCATCCTTCATG 128607 >seq3997 Length=108068 Score = 105 bits (116), Expect = 9e-18 Identities = 233/344 (68%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| |||||||| || || |||||||| |||| |||| ||||| || || || Sbjct 89779 AAGCACGCGAAGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTC 89838 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAA 39732 ||||| ||||||| || ||||| |||||||||||||| || ||| ||| ||| || || Sbjct 89839 AGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCGC-GCAGAAGCTTCCGGAGAA 89897 Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA-TTAT 39791 |||||| || || || || || || || || | ||| || ||| | | | | Sbjct 89898 GAAGATCCCCTCCACGCACGCGAACGCCACGAGACGCTCGGCG-AACGATTCTGAGCCGT 89956 Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851 ||||| ||| | ||||| | || |||||| || ||||| || || || || || | Sbjct 89957 CGATCCATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGATTGCGT 90016 Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911 ||||| || || || || || | || | || | | || || |||| Sbjct 90017 GGAAGAGGCGGTGCTTCTCGGAGGAGTCCTTGATGTAGGATTCGAGGAGGAGGCTGTACA 90076 Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAA 39955 | || || |||||||| || ||||| ||||| || || || ||| Sbjct 90077 TCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAA 90120 >seq8535 Length=22056 Score = 95.1 bits (104), Expect = 2e-14 Identities = 387/602 (64%), Gaps = 11/602 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| ||||| || || || | |||||| |||| || | ||||| || || ||||| Sbjct 6595 GCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAG 6654 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||||| || |||||||||||||||||||| || ||| ||| ||| || |||| Sbjct 6655 ACCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAGAAGCTTCCGGAGAAGA 6713 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTAT-CATTATGT 39793 |||| || || || || ||||| | || || || || ||| | | | | Sbjct 6714 AGATCCCCTCCACGCACGCGAATGCGATGAGCCTTTCGGCG-AACGATTCTGAACCGTCG 6772 Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853 ||||||||| ||||| | || || || | || ||||| | || || || || | Sbjct 6773 ATCCACTTCAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGG 6832 Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913 ||||| | || || | || || | || | || | | || || |||||| Sbjct 6833 AAGAGGCGGTTCTTCTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAGGCTGTACATT 6892 Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973 || || |||||||| || || || || || || ||||| || | ||||| | | | Sbjct 6893 TCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGACT 6952 Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033 |||||||| |||| | || | || || || || ||||| ||||| Sbjct 6953 TGTACCTCCTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCG 7012 Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAG 40090 || || || | || || | || || | || || |||| || | | || |||| Sbjct 7013 AAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAG 7072 Query 40091 T--CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 | | ||| || | || | ||| ||||| || || ||||| |||||||| || |||| Sbjct 7073 TGGCGTTG--GTCCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCT 7130 Query 40149 TTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGAT 40208 | |||||||| | ||| || | | || || || || || || |||| || ||| | Sbjct 7131 TCTTGTACATCTCCCAGATCTGCGGGTACTGAATCGGGAACATGCAGAATCGATCTGGGT 7190 Query 40209 TT 40210 || Sbjct 7191 TT 7192 >seq6526 Length=28452 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||||| ||||| || || || | |||||| |||| || | ||||| || || ||| Sbjct 21887 AAGCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTG 21946 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAA 39732 || || ||||||| || |||||||||||||||||||| || ||| ||| ||| || || Sbjct 21947 AGACCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAGAAGCTTCCGGAGAA 22005 Query 39733 GAAGATGCCTTC 39744 |||||| || || Sbjct 22006 GAAGATCCCCTC 22017 >seq15419 Length=18895 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/122 (76%), Gaps = 3/122 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || || ||||| || || |||||||||||| ||| | ||| || || ||||| | Sbjct 8785 GCAAGCAAAATCACAGTGGAGACCCTCATCTCTAGAAATAAGTTCATTTGAGAATGTCAA 8844 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT--CCAGAAAAG 39733 || ||||| || || | |||||| |||||||| ||||| ||||||| | ||||||| Sbjct 8845 GCCCGGCATGAGTCCTCTCTTTTTAAGCCAAAAAATGGC-GCAAAAGCTGAGAAGAAAAG 8903 Query 39734 AA 39735 || Sbjct 8904 AA 8905 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686679363874440