Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq6300 134 2e-26
seq10 134 2e-26
seq3997 105 9e-18
seq8535 95.1 2e-14
seq6526 87.8 2e-12
seq15419 84.2 3e-11
>seq6300
Length=25064
Score = 134 bits (148), Expect = 2e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
|| || ||||| | || | |||||||| |||| | |||| ||||| |||| | ||||
Sbjct 13282 CCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGAAGCATTGGAACCACACCA 13341
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | |||||||||||| |||||| || || | || || |||||| || |||
Sbjct 13342 TTGGATGTCCCATTTGTTCCACGAATATAGCTGCCGGTAGCACGGATATTATGAACAGAA 13401
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
| ||| |||||||| || |||| ||| | |||||| |||||| || ||||||||
Sbjct 13402 ACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCTTTCAAGGTATCATATATT 13461
Query 69931 CCCTCTATGCTATCATCTATCATG 69954
|| || ||||| |||||| |||||
Sbjct 13462 CCTTCAATGCTGTCATCTTTCATG 13485
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 69991 GTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTG 70050
|| || |||||||| | ||||| ||||| |||||||||||| | | ||| | || ||
Sbjct 13733 GTCCCTGCATTAAAAAGAGTAGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 13792
Query 70051 TATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAAC 70110
|| |||| ||| | || | ||||| || || || || | || || | |||||||
Sbjct 13793 TAAGTTTTGATAACAGAATAGATATCATCCTTGTGGATCCCAACAGCAACCCTCATCAAC 13852
Query 70111 ATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCCA 70168
|| || ||||| | ||| || | ||| | | || |||||||| ||| || | || |
Sbjct 13853 ATGTGTTGAGGCCTTTCAACAACCTTTCCT--TGTACTTTCAACAAGTAAGACCTCTCAA 13910
Query 70169 GAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217
| || || || ||||| || | || |||||||| || || || ||
Sbjct 13911 GTGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATTAT 13959
>seq10
Length=262601
Score = 134 bits (148), Expect = 2e-26
Identities = 152/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810
|| || ||||| | || | |||||||| ||| | |||| ||||| |||| || ||||
Sbjct 128810 CCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACACCA 128751
Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870
|| ||| | |||||||||||| ||||||||| ||| | || || |||||| || |||
Sbjct 128750 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGGATATTATGAACAGAG 128691
Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930
||||| |||||||| || ||| ||| | |||||| |||||| || ||||||||
Sbjct 128690 AGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATATT 128631
Query 69931 CCCTCTATGCTATCATCTATCATG 69954
|| || || || ||||| |||||
Sbjct 128630 CCTTCAATACTGTCATCCTTCATG 128607
>seq3997
Length=108068
Score = 105 bits (116), Expect = 9e-18
Identities = 233/344 (68%), Gaps = 4/344 (1%)
Strand=Plus/Plus
Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673
||||| |||||||| || || |||||||| |||| |||| ||||| || || ||
Sbjct 89779 AAGCACGCGAAGTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTC 89838
Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAA 39732
||||| ||||||| || ||||| |||||||||||||| || ||| ||| ||| || ||
Sbjct 89839 AGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCGC-GCAGAAGCTTCCGGAGAA 89897
Query 39733 GAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCA-TTAT 39791
|||||| || || || || || || || || | ||| || ||| | | | |
Sbjct 89898 GAAGATCCCCTCCACGCACGCGAACGCCACGAGACGCTCGGCG-AACGATTCTGAGCCGT 89956
Query 39792 GTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCAT 39851
||||| ||| | ||||| | || |||||| || ||||| || || || || || |
Sbjct 89957 CGATCCATTTCAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGATTGCGT 90016
Query 39852 TAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACA 39911
||||| || || || || || | || | || | | || || ||||
Sbjct 90017 GGAAGAGGCGGTGCTTCTCGGAGGAGTCCTTGATGTAGGATTCGAGGAGGAGGCTGTACA 90076
Query 39912 TTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAA 39955
| || || |||||||| || ||||| ||||| || || || |||
Sbjct 90077 TCTCGGAGTGGATGTTCTCGATCGCGATCTGGAAGCCATAGAAA 90120
>seq8535
Length=22056
Score = 95.1 bits (104), Expect = 2e-14
Identities = 387/602 (64%), Gaps = 11/602 (2%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
||| ||||| || || || | |||||| |||| || | ||||| || || |||||
Sbjct 6595 GCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAG 6654
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734
|| ||||||| || |||||||||||||||||||| || ||| ||| ||| || ||||
Sbjct 6655 ACCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAGAAGCTTCCGGAGAAGA 6713
Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTAT-CATTATGT 39793
|||| || || || || ||||| | || || || || ||| | | | |
Sbjct 6714 AGATCCCCTCCACGCACGCGAATGCGATGAGCCTTTCGGCG-AACGATTCTGAACCGTCG 6772
Query 39794 ATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 39853
||||||||| ||||| | || || || | || ||||| | || || || || |
Sbjct 6773 ATCCACTTCAACGCCCACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGG 6832
Query 39854 AAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATT 39913
||||| | || || | || || | || | || | | || || ||||||
Sbjct 6833 AAGAGGCGGTTCTTCTCGGCCGAGTCCTTGATGTAGGATTCGAGCAGGAGGCTGTACATT 6892
Query 39914 TCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATT 39973
|| || |||||||| || || || || || || ||||| || | ||||| | | |
Sbjct 6893 TCGGAGTGGATGTTCTCGATGGCGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGACT 6952
Query 39974 TGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCA 40033
|||||||| |||| | || | || || || || ||||| |||||
Sbjct 6953 TGTACCTCCTTCATGAATCGGCCAGCGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCG 7012
Query 40034 AAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCA---ATTTATTCCAG 40090
|| || || | || || | || || | || || |||| || | | || ||||
Sbjct 7013 AAGAAGGCGAGGACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAG 7072
Query 40091 T--CATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148
| | ||| || | || | ||| ||||| || || ||||| |||||||| || ||||
Sbjct 7073 TGGCGTTG--GTCCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCT 7130
Query 40149 TTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAACAAATCTATTTGGAT 40208
| |||||||| | ||| || | | || || || || || || |||| || ||| |
Sbjct 7131 TCTTGTACATCTCCCAGATCTGCGGGTACTGAATCGGGAACATGCAGAATCGATCTGGGT 7190
Query 40209 TT 40210
||
Sbjct 7191 TT 7192
>seq6526
Length=28452
Score = 87.8 bits (96), Expect = 2e-12
Identities = 100/132 (76%), Gaps = 2/132 (2%)
Strand=Plus/Plus
Query 39614 AAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673
||||| ||||| || || || | |||||| |||| || | ||||| || || |||
Sbjct 21887 AAGCACGCGAAATCGCAGTGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTG 21946
Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAA 39732
|| || ||||||| || |||||||||||||||||||| || ||| ||| ||| || ||
Sbjct 21947 AGACCCGGCATTAACCCGCGCTTTTTGAGCCAAAATATCGC-GCAGAAGCTTCCGGAGAA 22005
Query 39733 GAAGATGCCTTC 39744
|||||| || ||
Sbjct 22006 GAAGATCCCCTC 22017
>seq15419
Length=18895
Score = 84.2 bits (92), Expect = 3e-11
Identities = 93/122 (76%), Gaps = 3/122 (2%)
Strand=Plus/Plus
Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675
||| || || ||||| || || |||||||||||| ||| | ||| || || ||||| |
Sbjct 8785 GCAAGCAAAATCACAGTGGAGACCCTCATCTCTAGAAATAAGTTCATTTGAGAATGTCAA 8844
Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGAT--CCAGAAAAG 39733
|| ||||| || || | |||||| |||||||| ||||| ||||||| | |||||||
Sbjct 8845 GCCCGGCATGAGTCCTCTCTTTTTAAGCCAAAAAATGGC-GCAAAAGCTGAGAAGAAAAG 8903
Query 39734 AA 39735
||
Sbjct 8904 AA 8905
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686679363874440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |