Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq8535 105 5e-18 seq6526 98.7 8e-16 seq1735 87.8 1e-12 >seq8535 Length=22056 Score = 105 bits (116), Expect = 5e-18 Identities = 236/345 (68%), Gaps = 12/345 (3%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || ||||| ||||| || || || || || ||||||||||| || ||| | Sbjct 6933 TTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCCTGCTC 6874 Query 44003 GATACGTACATCAAAGA-TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGT 44061 || | |||||||| || | ||| ||||||| | || | || | ||||| || || || Sbjct 6873 GAATCCTACATCAAGGACTCGGC-CGAGAAGAACCGCCTCTTCCACGCGATCGAGACCGT 6815 Query 44062 ACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCAAATGATT 44117 || |||| | || | || ||| | ||||| | || ||||| | |||| || | Sbjct 6814 CCCTTGCG-TGGAAAAAAAGGCAAAGTGGGCGTTGAAGTGGATCGACGGTTCA---GAAT 6759 Query 44118 CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCG 44176 | || | ||| | || |||| || || ||||| || || ||||| || || | | Sbjct 6758 CGTTCGCCGAAAGGCTCATCGCATTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCT 6699 Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236 | ||| || ||||||||| | || || || || || ||||| || | || || || || Sbjct 6698 TCTGC-GCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACTTTCTCGAAC 6640 Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281 ||| | || || || || ||||| || |||||||| || ||| Sbjct 6639 GAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGATTTCGCGTGC 6595 >seq6526 Length=28452 Score = 98.7 bits (108), Expect = 8e-16 Identities = 234/347 (67%), Gaps = 10/347 (3%) Strand=Plus/Minus Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002 || || || || ||||| ||||| || || || || || ||||||||||| || ||| | Sbjct 22227 TTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCCTGCTC 22168 Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062 || | ||||||| || | ||||||| | || | || | ||||| || || | Sbjct 22167 GAATCCTACATCAGGGACCCGGCCGAGAAGGACCGCCTCTTCCACGCGATCGAGACCATC 22108 Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCAAATGATTC 44118 || |||| | || | || || | ||||| | |||||||| | |||| || || Sbjct 22107 CCTTGCG-TGGAAAAAAAGGCCAAGTGGGCGTTGAAATGGATCGACGGTTCA---GAATC 22052 Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGT 44177 || | ||| |||| ||||||| || | || || || ||||| || || | | | Sbjct 22051 GTTCGCCGAAAGACTCATCGCGTTCGCGTGCTTCGAGGGGATCTTCTTCTCCGGAAGCTT 21992 Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237 ||| || ||||||||| | || || || || || ||||| || | || || || || | Sbjct 21991 CTGC-GCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTCGAACG 21933 Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284 || | || || || || ||||| || |||||||| || |||||| Sbjct 21932 AGCTGATCTCGCGAGACGAGGGCTTGCACTGCGATTTCGCGTGCTTG 21886 >seq1735 Length=24823 Score = 87.8 bits (96), Expect = 1e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138 ||||| || ||| ||| | || | ||||||||| ||||||| | || | ||||||| Sbjct 6664 CAGTTCTATGTTGCCAACAGAGAGTTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 6723 Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 || ||||| |||||||||||||| || |||||| || | |||| |||||||| || Sbjct 6724 GGTCTAGGTGTCCCGTTTAACATTGCTTCTTATGCCCTCTTGACGTGCATGATTGCTCAT 6783 Query 41199 GTT 41201 ||| Sbjct 6784 GTT 6786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397326563609605