Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq8535 105 5e-18
seq6526 98.7 8e-16
seq1735 87.8 1e-12
>seq8535
Length=22056
Score = 105 bits (116), Expect = 5e-18
Identities = 236/345 (68%), Gaps = 12/345 (3%)
Strand=Plus/Minus
Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002
|| || || || ||||| ||||| || || || || || ||||||||||| || ||| |
Sbjct 6933 TTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCCTGCTC 6874
Query 44003 GATACGTACATCAAAGA-TGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGT 44061
|| | |||||||| || | ||| ||||||| | || | || | ||||| || || ||
Sbjct 6873 GAATCCTACATCAAGGACTCGGC-CGAGAAGAACCGCCTCTTCCACGCGATCGAGACCGT 6815
Query 44062 ACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCAAATGATT 44117
|| |||| | || | || ||| | ||||| | || ||||| | |||| || |
Sbjct 6814 CCCTTGCG-TGGAAAAAAAGGCAAAGTGGGCGTTGAAGTGGATCGACGGTTCA---GAAT 6759
Query 44118 CTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCG 44176
| || | ||| | || |||| || || ||||| || || ||||| || || | |
Sbjct 6758 CGTTCGCCGAAAGGCTCATCGCATTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCT 6699
Query 44177 TTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAAT 44236
| ||| || ||||||||| | || || || || || ||||| || | || || || ||
Sbjct 6698 TCTGC-GCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACTTTCTCGAAC 6640
Query 44237 GAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGC 44281
||| | || || || || ||||| || |||||||| || |||
Sbjct 6639 GAGCTGATCTCGCGAGACGAGGGCTTGCACTGCGATTTCGCGTGC 6595
>seq6526
Length=28452
Score = 98.7 bits (108), Expect = 8e-16
Identities = 234/347 (67%), Gaps = 10/347 (3%)
Strand=Plus/Minus
Query 43943 TTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATA 44002
|| || || || ||||| ||||| || || || || || ||||||||||| || ||| |
Sbjct 22227 TTCTACGGCTTCCAAATCGCCATCGAGAACATCCACTCCGAAATGTACAGCCTCCTGCTC 22168
Query 44003 GATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGAAACAGTA 44062
|| | ||||||| || | ||||||| | || | || | ||||| || || |
Sbjct 22167 GAATCCTACATCAGGGACCCGGCCGAGAAGGACCGCCTCTTCCACGCGATCGAGACCATC 22108
Query 44063 CC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAA---TTCAAATGATTC 44118
|| |||| | || | || || | ||||| | |||||||| | |||| || ||
Sbjct 22107 CCTTGCG-TGGAAAAAAAGGCCAAGTGGGCGTTGAAATGGATCGACGGTTCA---GAATC 22052
Query 44119 TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG-ATCGT 44177
|| | ||| |||| ||||||| || | || || || ||||| || || | | |
Sbjct 22051 GTTCGCCGAAAGACTCATCGCGTTCGCGTGCTTCGAGGGGATCTTCTTCTCCGGAAGCTT 21992
Query 44178 TTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATG 44237
||| || ||||||||| | || || || || || ||||| || | || || || || |
Sbjct 21991 CTGC-GCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTCGAACG 21933
Query 44238 AGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTG 44284
|| | || || || || ||||| || |||||||| || ||||||
Sbjct 21932 AGCTGATCTCGCGAGACGAGGGCTTGCACTGCGATTTCGCGTGCTTG 21886
>seq1735
Length=24823
Score = 87.8 bits (96), Expect = 1e-12
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 41079 CAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATG 41138
||||| || ||| ||| | || | ||||||||| ||||||| | || | |||||||
Sbjct 6664 CAGTTCTATGTTGCCAACAGAGAGTTATCATGTCAAATGTATCAGCGCTCTGCTGACATG 6723
Query 41139 GGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198
|| ||||| |||||||||||||| || |||||| || | |||| |||||||| ||
Sbjct 6724 GGTCTAGGTGTCCCGTTTAACATTGCTTCTTATGCCCTCTTGACGTGCATGATTGCTCAT 6783
Query 41199 GTT 41201
|||
Sbjct 6784 GTT 6786
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397326563609605
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |