Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5804 98.7 8e-16 seq2938 98.7 8e-16 seq7849 95.1 1e-14 seq22277 86.0 5e-12 seq21627 84.2 2e-11 >seq5804 Length=153150 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| ||||| ||||||||| | | | || |||| |||||||| || ||| Sbjct 32530 GTGGATTCTTTCTGAATGTTGTAGTCGGCGAGGGTTCGGCCGTCCTCGAGCTGCTTTCCG 32471 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || | ||||| | ||| |||||||| || | ||||| || || ||||||| || Sbjct 32470 GCAAAGATGAGCCTCTGCTGATCCGGAGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTG 32411 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| || || ||| Sbjct 32410 ACGTTGTCGATGGTGTCGGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTT 32351 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 32350 TTCACAAAGATCTGCAT 32334 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || ||||| || || ||||||||| | | | || |||| |||||||| || ||| Sbjct 32758 GTGGATTCTTTCTGGATGTTGTAGTCGGCAAGGGTTCGGCCGTCCTCGAGCTGCTTTCCG 32699 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||| || ||||| || | ||||| || || ||||||| || Sbjct 32698 GCGAAGATGAGTCTCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTG 32639 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | | || || || || || || | ||||| || || ||| Sbjct 32638 ACGTTGTCGATGGTGTCGGAGCTCTCTACCTCAAGGGTGATGGTCTTGCCGGTGAGGGTT 32579 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 32578 TTCACAAAGATCTGCAT 32562 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || ||||| || |||||||||||| || | ||||| | || || Sbjct 32998 ACCAAGTGGAGGGTCGATTCTTTCTGTATATTGTAGTCGGCCAGGGTGCGCCCATCCTCC 32939 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 | || || ||||| | ||||| | ||| || ||||| || | ||||| || || | Sbjct 32938 AATTGCTTCCCGGCAAAGATGAGCCTCTGCTGGTCCGGTGGGATGCCCTCCTTGTCCTGG 32879 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | | || | ||||| | | ||||| || || || |||| ||| Sbjct 32878 ATCTTGGCCTTGACGTTGTCGATGGTGTCCGAGCTCTCAACCTCGAGGGTAATAGTCTTG 32819 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || || || ||||||||||| Sbjct 32818 CCGGTGAGGGTCTTGACGAAGATTTGCAT 32790 >seq2938 Length=28785 Score = 98.7 bits (108), Expect = 8e-16 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 27033 CGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCG 27092 |||| ||| | || | || || ||||| || || |||||||| | | | || || Sbjct 10259 CGCAGTACAAGGTGGAGGGTCGATTCTTTCTGGATGTTGTAGTCAGCGAGGGTTCGGCCG 10200 Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| || || ||| ||||||| | ||| |||||||| || | ||||| || Sbjct 10199 TCCTCGAGCTGCTTTCCTGCGAAAATGAGCCTCTGCTGATCCGGAGGGATGCCCTCCTTG 10140 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || ||||||| || | | | || | ||||| | | ||| || || || || || Sbjct 10139 TCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATG 10080 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAAAATTTATTAAACC 27270 | ||||| || || ||||||||||| || ||||| ||| ||||| || | ||||| Sbjct 10079 GTCTTGCCGGTGAGGGTTTTCACAAAAATCTGCAT--CTG-TAAAATTTAAAAAAACC 10025 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGT-CGCTCATGTTGCGCTCGTCTTC 27097 ||||| || | || || ||||| || |||||||||| ||| || |||| | ||||| Sbjct 10709 ACCAAGTGGAGGGTCGATTCTTTCTGGATATTGTAGTCCGCGAGTG-TGCGGCCATCTTC 10651 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 ||||| || || ||| | ||||| | ||| || ||||| || | |||||||| || Sbjct 10650 AAGCTGCTTTCCAGCGAAGATGAGTCTCTGCTGGTCCGGAGGGATGCCCTCTTTGTCCTG 10591 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTT 27217 ||||||| || | | | || | ||||| | | ||| || || || || || | || Sbjct 10590 GATCTTGGCCTTAACGTTGTCGATGGTGTCGGAGCTTTCCACCTCGAGGGTGATGGTCTT 10531 Query 27218 GCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||| ||||| || || || ||||| ||||| Sbjct 10530 GCCGGTCAGGGTCTTGACGAAGATCTGCAT 10501 >seq7849 Length=122270 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || | || ||||| |||||||||| || || || || || || |||||||| | Sbjct 79472 CCGCCCCTCAGCCGCAGCACCAAATGTAGGGTTGACTCCTTCTGGATGTTGTAGTCTGCC 79531 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | ||| | || || | || || || ||| | || || | |||||||||||| || Sbjct 79532 AGAGTCCGCCCATCCTCCAATTGCTTCCCTGCGAAGATCAGCCTCTGTTGATCCGGTGGA 79591 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||||| ||||| |||| | | || | || || | | ||||| Sbjct 79592 ATCCCCTCTTTATCCTGAATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTCTCAACC 79651 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| || || ||||| |||||||||||||| Sbjct 79652 TCGAGCGTGATTGTCTTGCCGGTTAGGGTTTTGACAAAGATTTGCAT 79698 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGT-TGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || || ||||| | || | |||| | || ||||||||||| || Sbjct 81098 GTGGACTCCTTCTGGATGTTATAGTC-CGCAAGAGTGCGGCCATCCTCGAGCTGTTTTCC 81156 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || |||||||| |||||||| || | || ||||| || ||| ||| ||| Sbjct 81157 TGCGAAGATCAGACGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATTTTGGCTTT 81216 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | | || || || |||||||| | ||||| || || || Sbjct 81217 GACGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGGTTAGGGT 81276 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||| ||||| Sbjct 81277 TTTCACGAAGATCTGCAT 81294 Score = 82.4 bits (90), Expect = 6e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27093 TCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTA 27152 || |||||||| || |||||| | || |||||||||||||| || || | ||| || || Sbjct 80000 TCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGTTGATCAGGAGGAATACCTTCCTTG 80059 Query 27153 TCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATA 27212 || |||||| |||| | | || | ||||| | | ||||| || || || || Sbjct 80060 TCTTGGATCTTCGCCTTCACGTTATCAATTGTGTCGGAGCTCTCAACCTCGAGCGTGATT 80119 Query 27213 GATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | ||| || || || ||||| || ||||| ||||| Sbjct 80120 GTTTTCCCAGTTAGGGTTTTTACGAAGATCTGCAT 80154 >seq22277 Length=3790 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || ||||||||||| || |||| |||| || |||||||| || Sbjct 1728 GTTGATTCCTTCTGTATATTGTAGTCCGCCAGCGTGCGGCCGTCCTCAAGCTGTTTTCCA 1669 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || || | ||| || ||||| || | || || || || ||||||| || Sbjct 1668 GCGAAGATCAGCCTCTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 1609 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | |||||| | | ||| || || || || || | |||||||| || || Sbjct 1608 ACATTATCAATAGTGTCAGAGCTTTCGACCTCGAGGGTGATCGTCTTGCCCGTGAGGGTC 1549 Query 27231 TTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 1548 TTCACAAAGATCTGCAT 1532 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || |||||||| ||| | | |||| |||| || ||||| || || Sbjct 1500 GTCGACTCCTTCTGGATGTTGTAGTCTGCT-AGGGTGCGGCCGTCCTCAAGCTGCTTTCC 1442 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || || || || || ||||| || | || || || || ||||||| || Sbjct 1441 GGCAAAGATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTT 1382 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| |||||||| || || | ||| ||||| || || Sbjct 1381 GACATTATCAATGGTGTCAGAGCTTTCGACTTCTAGGGTGATGGTTTTTCCCGTGAGGGT 1322 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 1321 CTTCACAAAGATCTGCAT 1304 >seq21627 Length=4779 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || || || |||||||| ||| | | |||| |||| || ||||| || || Sbjct 3282 GTCGACTCCTTCTGGATGTTGTAGTCTGCT-AGGGTGCGGCCGTCCTCAAGCTGCTTTCC 3340 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | || || || || || ||||| || | || || || || ||||||| || Sbjct 3341 GGCAAAGATCAGCCGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTT 3400 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | | ||| |||||||| || || | ||| ||||| || || Sbjct 3401 GACATTATCAATGGTGTCAGAGCTTTCGACTTCTAGGGTGATGGTTTTTCCCGTGAGGGT 3460 Query 27230 TTTCACAAAGATTTGCAT 27247 ||||||||||| ||||| Sbjct 3461 CTTCACAAAGATCTGCAT 3478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424796014933752