Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq15031 154 2e-32 seq3997 141 1e-28 seq15694 131 2e-25 seq6526 100 4e-16 seq8535 98.7 1e-15 seq3070 86.0 8e-12 seq838 86.0 8e-12 seq15419 84.2 3e-11 seq11396 84.2 3e-11 >seq15031 Length=67428 Score = 154 bits (170), Expect = 2e-32 Identities = 289/421 (69%), Gaps = 8/421 (2%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| ||||| | || ||||| || |||||||| | | ||||| | ||||| Sbjct 39397 ATCAAGAATATCAGCACGGTTAGTTGCTGCAATAACAATGACACCAGTGTTTCCTTCAAA 39456 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | | || |||| || |||||||| ||||||||| || | | Sbjct 39457 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT--CCT 39514 Query 11602 ACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | | |||| | | |||| | || || |||||||| ||||||| |||||||| || Sbjct 39515 CCGATTCCAGTTCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAAGACAATGCAG 39574 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 ||| ||| || ||| | | || ||||| || |||| |||||| ||||||||| Sbjct 39575 GGTGCATTCTCCTTGGCCTTCTTGAAAAGATCACGGACCCGAGAGGCACCAACACCAACA 39634 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCG 11777 |||||||| || || | || |||| | || || ||||| ||| || |||||| | Sbjct 39635 AACATCTCTACGAACTCTGAACCAGA--AATGGAGAAAAATGGAACACCTGCTTCACCAG 39692 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | || || ||| || |||||||| || || ||||| ||| | ||||| | ||| Sbjct 39693 CAATCGCCTTGGCCAGCAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCCTT 39752 Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 ||||| || ||| | || | |||||||| | ||| ||||| ||||| | || Sbjct 39753 TAGGGATACGAGCCCCAACTGCAGTGAACCTCTCGGGCTTCTTCAGAAACTCCACCACCT 39812 Query 11898 C 11898 | Sbjct 39813 C 39813 >seq3997 Length=108068 Score = 141 bits (156), Expect = 1e-28 Identities = 339/502 (68%), Gaps = 17/502 (3%) Strand=Plus/Plus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||| |||| |||||||||||| || |||||||| | | || || ||||| Sbjct 89497 TACTCCCCAACCCTCTTCTCAAAGAAATTCGTCTTCCCCTGCAAACTGATCAGCTCCATC 89556 Query 122431 AAGTCAAATGGATTCTTCGCGTTCC---AAATGGGTGGCACCCCAACTTGTTTGAGGAGA 122487 ||||||| ||||||| || || |||| || |||||| | || Sbjct 89557 CAGTCAAACGGATTCTGTGCA--CCGTAAAATTTCCCACATCCCAACGCAACCAAA-AGC 89613 Query 122488 CGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTA 122547 | ||||| |||| |||| |||||| | ||||| ||| ||||||||| | ||| Sbjct 89614 CTATCCGCCACAAACTCGATGTACCGGCACATCAGATCACCGTTCATACCCACCAGGGCG 89673 Query 122548 CATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCG 122607 || || || ||||| | | |||| || |||| || || ||||| || ||||||| | Sbjct 89674 CACGGCAGAGCGTCGCACACGAACTCTCTCTCTATATCCACCGCGTCGCTCACGATACCC 89733 Query 122608 -TGGATAGTTTCGGTAG-TGGGTCTATTACGCAAAGTCTTGAAGAGCTC-CACGGCAAAC 122664 || || | | | | | | | | | || || || | | ||| |||| | || Sbjct 89734 CTGAATCGCTCC--TCGCTCAGCTTCTGACTCAGTAACTCGTACAGCAAGCACG-CGAAG 89790 Query 122665 TCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATG 122724 || ||| || ||||| ||||| || || || || || ||||| || || ||||| Sbjct 89791 TCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTCAGTCCCGGCATT 89850 Query 122725 AGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCC 122784 | || |||||||| | |||| | || |||||||| |||||||||||||| |||||| Sbjct 89851 AACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCC 89910 Query 122785 ACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCATTT 122843 || ||||| ||||| | || || |||||||| ||| || | | || | |||||| Sbjct 89911 ACGCACGCGAACGCCACGAGACGCTCGGCGAA----CGATTCTGAGCCGTCGATCCATTT 89966 Query 122844 CATTGCCCATTTCGCCTTCTTC 122865 || ||||| || ||||||||| Sbjct 89967 CAGGGCCCACTTGGCCTTCTTC 89988 >seq15694 Length=177509 Score = 131 bits (144), Expect = 2e-25 Identities = 284/421 (67%), Gaps = 8/421 (2%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTCAAA 11541 |||||| ||||| | || ||||| |||||||| || | || ||||| | ||||| Sbjct 55444 ATCAAGAATATCTGCACGGTTAGTTGCCGCAATTACAATGATACCAGTGTTTCCTTCAAA 55503 Query 11542 GCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGGCAT 11601 |||||||| || || | | || |||| || |||||||||||||||||| || | | Sbjct 55504 ACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTCTCATCATTTCCT--CCT 55561 Query 11602 ACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACAT 11659 | | |||| | | ||| | || || |||||||| ||||||| |||||||| || Sbjct 55562 CCAATTCCAGTTCCTCTCTGCCTCCCAACAGCATCAATTTCATCAACAAAGACAATGCAG 55621 Query 11660 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACCAACA 11719 ||| ||| || ||| | | || ||||| ||||||| |||||| |||||||| Sbjct 55622 GGTGCATTCTCCTTGGCCTTCTTGAAAAGATCACGAACCCGAGAGGCACCAACACCAACG 55681 Query 11720 AACATCTCCACAAAGTTTGCGGCAGAGCACTG--GATGAATGGGACATTTGATTCACCCG 11777 |||||||| || || | || |||| | || || ||||| ||| || ||| || | Sbjct 55682 AACATCTCTACGAACTCTGAACCAGA--AATGGAGAAAAATGGAACACCTGCTTCGCCAG 55739 Query 11778 CGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGGCGCCTC 11837 | || || || || | ||||| || || ||||| || | ||||| | || Sbjct 55740 CAATTGCCTTCGCCAGCAAAGTCTTCCCAGTTCCTGGAGGTCCTACAAGAAGAACTCCCT 55799 Query 11838 GGGGGATCTTGGCACCACTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATCCACAATCT 11897 ||||| || ||| | || | |||||||| | ||| ||||| ||||| | || Sbjct 55800 TAGGGATACGAGCCCCAACTGCAGTGAACCTCTCGGGCTTCTTCAGAAACTCCACCACCT 55859 Query 11898 C 11898 | Sbjct 55860 C 55860 >seq6526 Length=28452 Score = 100 bits (110), Expect = 4e-16 Identities = 137/191 (72%), Gaps = 3/191 (2%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||| ||||| || || || || || |||||| ||||| ||||| | || ||||| Sbjct 21911 CCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGACCCGGCATTAACCCGCGCTTT 21970 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | |||| | || |||||||| |||||||||||||| ||||| | ||||| ||| Sbjct 21971 TTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGAAGCACGCGAAC 22030 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | || | ||||||||| || || | || | |||||||| ||||| || Sbjct 22031 GCGATGAGTCTTTCGGCGAACGATTCTGA---ACCGTCGATCCATTTCAACGCCCACTTG 22087 Query 122857 GCCTTCTTCTC 122867 ||||| || || Sbjct 22088 GCCTTTTTTTC 22098 >seq8535 Length=22056 Score = 98.7 bits (108), Expect = 1e-15 Identities = 151/215 (70%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 ||||| ||||| || || || || || ||||| ||||| ||||| | || ||||| Sbjct 6617 CCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGCATTAACCCGCGCTTT 6676 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | |||| | || |||||||| |||||||||||||| |||||||| ||||| || Sbjct 6677 TTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCACGCACGCGAAT 6736 Query 122797 GCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTGCATCAAACCATTTCATTGCCCATTTC 122856 || | || | ||||||||| || || | || | ||| |||| ||||| || Sbjct 6737 GCGATGAGCCTTTCGGCGAACGATTCTGA---ACCGTCGATCCACTTCAACGCCCACTTT 6793 Query 122857 GCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 ||||| || || | || || || || | ||| || Sbjct 6794 GCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGC 6828 >seq3070 Length=18027 Score = 86.0 bits (94), Expect = 8e-12 Identities = 198/294 (67%), Gaps = 6/294 (2%) Strand=Plus/Plus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || || |||||||||||||| | Sbjct 8574 AAACCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGCTCTCTCTCATCATT--CCCA 8631 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | ||| | |||||||| ||||||||||| || || ||||| Sbjct 8632 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCCACCGCGTCAATCTCATCTATAAACACAATG 8691 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | ||| | ||| | ||||| | || | ||| || || |||||||| Sbjct 8692 CAAGG-CGCTTTCGACTTGGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCCCCCACACC 8750 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||| || ||||| | || |||| || | ||| || || | ||| || Sbjct 8751 CACAAACAATTCTACAAATTCTGATGCAGCACATGAAAAGAACGGCACGCCGGCTTCTCC 8810 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAG 11829 || | || | || | ||||||||||| ||||| ||| ||| | ||||| Sbjct 8811 AGCCACCGCCCTCGCCAACAGGGTCTTTCCGGTACCGGGCGGGCCCACCAGAAG 8864 >seq838 Length=146170 Score = 86.0 bits (94), Expect = 8e-12 Identities = 235/354 (66%), Gaps = 12/354 (3%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCTCATTGTC--- 11538 |||||| | |||| | |||||| || || | ||| ||| || | |||| | Sbjct 102917 ATCAAGCACATCCGGCCTATTAGTCGCAGCCAAAAC---AATCACACCCGAATTGCCCGA 102973 Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | | |||||||| || || |||||||||||||| | Sbjct 102974 AAACCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGCTCTCTCTCATCATT--CCCA 103031 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | | | || || | | ||| | || ||||||||||||||||| || || ||||| Sbjct 103032 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCTATAAACACAATG 103091 Query 11657 CATGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCACACC 11715 || || | |||| | || | ||||| | || | ||| || || |||||||| Sbjct 103092 CAAGG-CGCTTTTGACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCCCCCACACC 103150 Query 11716 AACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATTCACC 11775 ||||||| || ||||| | || |||| || | |||||| || | ||| || Sbjct 103151 CACAAACAATTCTACAAATTCTGATGCAGCACATGAAAAGAATGGCACGCCGGCTTCTCC 103210 Query 11776 CGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAG 11829 || | || | || | |||||||| || ||||| ||| ||| | ||||| Sbjct 103211 GGCCACCGCCCTTGCCAACAGGGTCTTCCCGGTACCAGGCGGCCCCACCAGAAG 103264 >seq15419 Length=18895 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||||||||||||||||| |||||||||||||||||||| | || Sbjct 8789 GCAAAATCACAGTGGAGACCCTCATCTCTAGAAATAAGTTCATTTGAGAATGTCAAGCCC 8848 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAA 122759 |||||||| || | ||| || | |||| |||| ||||| || Sbjct 8849 GGCATGAGTCCTCTCTTTTTAAGCCAAAAAATGGCGCAAAA 8889 >seq11396 Length=11044 Score = 84.2 bits (92), Expect = 3e-11 Identities = 129/183 (70%), Gaps = 6/183 (3%) Strand=Plus/Plus Query 11482 ATCAAGGATATCCACGCGATTAGTGGCCGCAATAACCACAATGCCAGTCT---CATTGTC 11538 |||||| || || | |||||| || ||||| || | || ||| | | || | Sbjct 10556 ATCAAGAATTTCAGGTCAATTAGTAGCAGCAATCACAATAACCCCACTGTTTCCACT--- 10612 Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| |||||||| || || || || ||||| | |||||| |||||||||||||| || Sbjct 10613 AAACCCATCCATTTCTGTTAGCAACTGATTCAATGTTTGCTCTCTCTCATCATTCCCTCC 10672 Query 11599 CATACCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATACA 11658 | | |||| | | ||| | ||||| |||||||||||||||||||| || | ||| Sbjct 10673 CCCAATGCCAGTCCCCCTCTGCCTCCCCACAGCATCAATCTCATCAATGAACACCAAACA 10732 Query 11659 TGG 11661 || Sbjct 10733 CGG 10735 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627822229461600