Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3997 163 4e-35 seq8535 136 5e-27 seq6526 129 7e-25 >seq3997 Length=108068 Score = 163 bits (180), Expect = 4e-35 Identities = 384/567 (68%), Gaps = 17/567 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || |||||||||| |||||| ||||| || |||||||| | ||| ||||| |||||| Sbjct 89497 TACTCCCCAACCCTCTTCTCAAAGAAATTCGTCTTCCCCTGCAAACTGATCAGCTCCATC 89556 Query 129788 AAATCAAATGGGTTCTTTG-AGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | ||||| || |||| || | ||||| | || |||| | | || | Sbjct 89557 CAGTCAAACGGATTCTGTGCACCGTAAAATTTCCCACATCCCAA-CGCAACCAAAAGCCT 89615 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906 ||||| || |||| |||||| ||||| || ||||||||| | ||| || Sbjct 89616 ATCCGCCACAAACTCGATGTACCGGCACATCAGATCACCGTTCATACCCACCAGGGCGCA 89675 Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG-T 129965 || || ||||| | | |||| | |||| || ||||| || || | |||||| | | Sbjct 89676 CGGCAGAGCGTCGCACACGAACTCTCTCTCTATATCCACCGCGTCGCTCACGATACCCCT 89735 Query 129966 GAATGGTCTCCGTGC-CAGGTCTATTGCGCA--AAGTCTTGAAG--AGTTCCACGGCAAA 130020 |||| | |||| || ||| | | | | || || || | || || |||| | || Sbjct 89736 GAATCG-CTCCTCGCTCAGCT-TCTGACTCAGTAACTCGTACAGCAAG---CACG-CGAA 89789 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| || |||||||| || ||||| || || |||||||| ||| || ||||| Sbjct 89790 GTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTCAGTCCCGGCAT 89849 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 | || |||||||| | ||| || ||||| || || || ||||||||||||||||| Sbjct 89850 TAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTC 89909 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTT 130200 ||| ||||||||||| | ||||||||| || || || || || | ||| || Sbjct 89910 CACGCACGCGAACGCCACGAGACGCTCGGCGAACGATTCTGA---GCCGTCGATCCATTT 89966 Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 130260 || ||||||| ||||| ||| | | || |||| ||||| ||| || | ||||| Sbjct 89967 CAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGATTGCGTGGAAGAGGCG 90026 Query 130261 CTTCTTTTCTGATGGATCTTTGATGTA 130287 | ||| || || | || |||||||| Sbjct 90027 GTGCTTCTCGGAGGAGTCCTTGATGTA 90053 >seq8535 Length=22056 Score = 136 bits (150), Expect = 5e-27 Identities = 184/255 (72%), Gaps = 5/255 (2%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || ||||| || || |||||||| ||||| ||||| | || ||||| Sbjct 6617 CCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGCATTAACCCGCGCTTT 6676 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | ||| || ||||| || || || |||||||||||||||||||| |||||||| Sbjct 6677 TTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCACGCACGCGAAT 6736 Query 130154 GCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 130212 || | ||| | || || || || | | || || | |||||||| |||||||| Sbjct 6737 GCGATGAGCCTTTCGGCGAACGATTCTGAAC----CGTCGATCCACTTCAACGCCCACTT 6792 Query 130213 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 130272 |||||||| || | || |||||||||| |||||| | ||||| ||||| || | Sbjct 6793 TGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGGAAGAGGCGGTTCTTCTCGGC 6852 Query 130273 TGGATCTTTGATGTA 130287 | || |||||||| Sbjct 6853 CGAGTCCTTGATGTA 6867 >seq6526 Length=28452 Score = 129 bits (142), Expect = 7e-25 Identities = 373/565 (66%), Gaps = 18/565 (3%) Strand=Plus/Plus Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093 |||||||| || ||||| || || ||||||||| ||||| ||||| | || ||||| Sbjct 21911 CCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGACCCGGCATTAACCCGCGCTTT 21970 Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153 || | ||| || ||||| || || || ||||||||||||||||| | ||||||||| Sbjct 21971 TTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGAAGCACGCGAAC 22030 Query 130154 GCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 130212 || | ||| | || || || || | | || || | ||| |||| |||||||| Sbjct 22031 GCGATGAGTCTTTCGGCGAACGATTCTGAAC----CGTCGATCCATTTCAACGCCCACTT 22086 Query 130213 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 130272 |||||||| || | || |||| ||||| |||||| | ||||| | ||| || | Sbjct 22087 GGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGCGTGGAAGAGGCGGTCCTTCTCGGC 22146 Query 130273 TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCATTTCATT 130332 || || ||||||| || | || || ||||| |||| ||| Sbjct 22147 CGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTGTACATTTCGGAGTGGA--TGTTCTCG 22204 Query 130333 ATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGCA--A 130388 ||||| || | ||||||| | ||||||||| | |||||||| || || | Sbjct 22205 ATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGCAACTTGTACCTC--CTTCATGA 22262 Query 130389 AATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATAT 130448 || | || ||||| | || || || ||||| | || || || || |||| | Sbjct 22263 AACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGT 22322 Query 130449 ACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTC---TTCCAGTCGTCAAGATCCTTCG 130505 || ||||| | || || | || | |||| | | ||||| | | |||| || Sbjct 22323 GTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTCCCAGTGGCGTTGGTCCTGCG 22382 Query 130506 AGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCTTCTTATAGAGTTCCCAG 130564 | ||||| ||||||||||| ||||| | || | || ||||||||| || | |||||| Sbjct 22383 ACAGATCCACCTCCTCCGCCGTCCAGAATG-ACGCTTCAGCCTTCTTGTACATCTCCCAG 22441 Query 130565 AGGTGGGGATACTTCAGGGGGAACA 130589 | || || |||| | ||||||| Sbjct 22442 ATCTGCGGGTACTGGATCGGGAACA 22466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618228634912760