Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq3997 163 4e-35
seq8535 136 5e-27
seq6526 129 7e-25
>seq3997
Length=108068
Score = 163 bits (180), Expect = 4e-35
Identities = 384/567 (68%), Gaps = 17/567 (3%)
Strand=Plus/Plus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
|| |||||||||| |||||| ||||| || |||||||| | ||| ||||| ||||||
Sbjct 89497 TACTCCCCAACCCTCTTCTCAAAGAAATTCGTCTTCCCCTGCAAACTGATCAGCTCCATC 89556
Query 129788 AAATCAAATGGGTTCTTTG-AGTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGACG 129846
| ||||| || |||| || | ||||| | || |||| | | || |
Sbjct 89557 CAGTCAAACGGATTCTGTGCACCGTAAAATTTCCCACATCCCAA-CGCAACCAAAAGCCT 89615
Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTACA 129906
||||| || |||| |||||| ||||| || ||||||||| | ||| ||
Sbjct 89616 ATCCGCCACAAACTCGATGTACCGGCACATCAGATCACCGTTCATACCCACCAGGGCGCA 89675
Query 129907 TGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCG-T 129965
|| || ||||| | | |||| | |||| || ||||| || || | |||||| | |
Sbjct 89676 CGGCAGAGCGTCGCACACGAACTCTCTCTCTATATCCACCGCGTCGCTCACGATACCCCT 89735
Query 129966 GAATGGTCTCCGTGC-CAGGTCTATTGCGCA--AAGTCTTGAAG--AGTTCCACGGCAAA 130020
|||| | |||| || ||| | | | | || || || | || || |||| | ||
Sbjct 89736 GAATCG-CTCCTCGCTCAGCT-TCTGACTCAGTAACTCGTACAGCAAG---CACG-CGAA 89789
Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080
|| ||| || |||||||| || ||||| || || |||||||| ||| || |||||
Sbjct 89790 GTCGCAGTGAAGGCCCTCGTCTCGCGAGATTAGCTCGTTCGAGAAAGTCAGTCCCGGCAT 89849
Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140
| || |||||||| | ||| || ||||| || || || |||||||||||||||||
Sbjct 89850 TAACCCGCGCTTCTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTC 89909
Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACTTTGTATCAAACCACTT 130200
||| ||||||||||| | ||||||||| || || || || || | ||| ||
Sbjct 89910 CACGCACGCGAACGCCACGAGACGCTCGGCGAACGATTCTGA---GCCGTCGATCCATTT 89966
Query 130201 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 130260
|| ||||||| ||||| ||| | | || |||| ||||| ||| || | |||||
Sbjct 89967 CAGGGCCCACTTGGCCTTCTTCACCACGCAAGGGATGGTCTCGATTGCGTGGAAGAGGCG 90026
Query 130261 CTTCTTTTCTGATGGATCTTTGATGTA 130287
| ||| || || | || ||||||||
Sbjct 90027 GTGCTTCTCGGAGGAGTCCTTGATGTA 90053
>seq8535
Length=22056
Score = 136 bits (150), Expect = 5e-27
Identities = 184/255 (72%), Gaps = 5/255 (2%)
Strand=Plus/Plus
Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093
|||||||| || ||||| || || |||||||| ||||| ||||| | || |||||
Sbjct 6617 CCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGCATTAACCCGCGCTTT 6676
Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153
|| | ||| || ||||| || || || |||||||||||||||||||| ||||||||
Sbjct 6677 TTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCACGCACGCGAAT 6736
Query 130154 GCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 130212
|| | ||| | || || || || | | || || | |||||||| ||||||||
Sbjct 6737 GCGATGAGCCTTTCGGCGAACGATTCTGAAC----CGTCGATCCACTTCAACGCCCACTT 6792
Query 130213 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 130272
|||||||| || | || |||||||||| |||||| | ||||| ||||| || |
Sbjct 6793 TGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGGAAGAGGCGGTTCTTCTCGGC 6852
Query 130273 TGGATCTTTGATGTA 130287
| || ||||||||
Sbjct 6853 CGAGTCCTTGATGTA 6867
>seq6526
Length=28452
Score = 129 bits (142), Expect = 7e-25
Identities = 373/565 (66%), Gaps = 18/565 (3%)
Strand=Plus/Plus
Query 130034 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 130093
|||||||| || ||||| || || ||||||||| ||||| ||||| | || |||||
Sbjct 21911 CCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGACCCGGCATTAACCCGCGCTTT 21970
Query 130094 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 130153
|| | ||| || ||||| || || || ||||||||||||||||| | |||||||||
Sbjct 21971 TTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGAAGCACGCGAAC 22030
Query 130154 GCAAAGAGACGCTCAGCAAAGGA-GCGGGACTTTGTATCAAACCACTTCATCGCCCACTG 130212
|| | ||| | || || || || | | || || | ||| |||| ||||||||
Sbjct 22031 GCGATGAGTCTTTCGGCGAACGATTCTGAAC----CGTCGATCCATTTCAACGCCCACTT 22086
Query 130213 CGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGA 130272
|||||||| || | || |||| ||||| |||||| | ||||| | ||| || |
Sbjct 22087 GGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGCGTGGAAGAGGCGGTCCTTCTCGGC 22146
Query 130273 TGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCATGGACCATTTCATT 130332
|| || ||||||| || | || || ||||| |||| |||
Sbjct 22147 CGGGTCCCTGATGTAGGATTCGAGCAGGAGGCTGTACATTTCGGAGTGGA--TGTTCTCG 22204
Query 130333 ATGGC--ACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCTGCA--A 130388
||||| || | ||||||| | ||||||||| | |||||||| || || |
Sbjct 22205 ATGGCGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGCAACTTGTACCTC--CTTCATGA 22262
Query 130389 AATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATAT 130448
|| | || ||||| | || || || ||||| | || || || || |||| |
Sbjct 22263 AACGGCCGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGACGT 22322
Query 130449 ACTTTATGAATTTCTGTTCATTCTCGTTCAGGGTC---TTCCAGTCGTCAAGATCCTTCG 130505
|| ||||| | || || | || | |||| | | ||||| | | |||| ||
Sbjct 22323 GTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTCCCAGTGGCGTTGGTCCTGCG 22382
Query 130506 AGAGATCTACCTCCTCCGCAGTCCA-ATTGCTCATTTGAGCCTTCTTATAGAGTTCCCAG 130564
| ||||| ||||||||||| ||||| | || | || ||||||||| || | ||||||
Sbjct 22383 ACAGATCCACCTCCTCCGCCGTCCAGAATG-ACGCTTCAGCCTTCTTGTACATCTCCCAG 22441
Query 130565 AGGTGGGGATACTTCAGGGGGAACA 130589
| || || |||| | |||||||
Sbjct 22442 ATCTGCGGGTACTGGATCGGGAACA 22466
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618228634912760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |