Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq15031 150 2e-31
seq8535 129 7e-25
seq15694 127 2e-24
seq3997 127 2e-24
seq6526 118 1e-21
seq838 84.2 3e-11
>seq15031
Length=67428
Score = 150 bits (166), Expect = 2e-31
Identities = 289/417 (69%), Gaps = 12/417 (3%)
Strand=Plus/Plus
Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9613
|||||| |||||| | || || || || || || |||| | ||| |||||| || ||
Sbjct 39397 ATCAAGAATATCAGCACGGTTAGTTGCTGCAATAACAATGACACCAGTGTTTCCTT--CA 39454
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
||||||||||| ||||||||||| ||||||| || ||||| | ||||||||| || |
Sbjct 39455 AAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT--C 39512
Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731
| | | |||| | | |||| | || || |||||||| ||||||| ||||| ||||
Sbjct 39513 CTCCGATTCCAGTTCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAAGACAATGC 39572
Query 9732 ATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790
| ||| ||| | | | | ||| ||| ||||| || || || ||| || ||||||
Sbjct 39573 AGGGTGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGGACCCGAGAGGCACCAACACCA 39631
Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849
||||||||||| || || | || | ||| || | || || || ||| | ||||||
Sbjct 39632 ACAAACATCTCTACGAACTCTGAACCAGAA-ATGGAGAAAAATGGAACACCTGCTTCACC 39690
Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909
||||| || ||| || || ||||| || || ||||| ||| | || || | ||
Sbjct 39691 AGCAATCGCCTTGGCCAGCAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCC 39750
Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966
| || || || ||| | || | | ||||| || | ||| ||||| |||||
Sbjct 39751 TTTAGGGATACGAGCCCCAACTGCAGTGAACCTCTCGGGCTTCTTCAGAAACTCCAC 39807
>seq8535
Length=22056
Score = 129 bits (142), Expect = 7e-25
Identities = 174/242 (72%), Gaps = 9/242 (4%)
Strand=Plus/Minus
Query 94699 GCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCG 94758
|| |||||||| | ||||| | || ||| | || || || || | |||| || ||
Sbjct 6852 GCCGAGAAGAACCGCCTCTTCCACGCGATCGAGACCGTCCCTTGCGTGGAAAAAAAGGCA 6793
Query 94759 GATTGGGCTATGAAGTGGTTTGA---TACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTC 94815
| ||||| |||||||| | || | || | ||| || || || | ||| ||
Sbjct 6792 AAGTGGGCGTTGAAGTGGATCGACGGTTCAGAATCG------TTCGCCGAAAGGCTCATC 6739
Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875
||||| ||||| || ||||| ||||||||||| || ||||||||| || | |||||||
Sbjct 6738 GCATTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTC 6679
Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935
|| ||||| || | ||||| |||||| ||||| |||||||| ||||| || ||||||
Sbjct 6678 AAAAAGCGCGGGTTAATGCCGGGTCTCACTTTCTCGAACGAGCTGATCTCGCGAGACGAG 6619
Query 94936 GG 94937
||
Sbjct 6618 GG 6617
>seq15694
Length=177509
Score = 127 bits (140), Expect = 2e-24
Identities = 237/339 (70%), Gaps = 12/339 (4%)
Strand=Plus/Plus
Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9613
|||||| ||||| | || || || || || || |||| ||||| |||||| || ||
Sbjct 55444 ATCAAGAATATCTGCACGGTTAGTTGCCGCAATTACAATGATACCAGTGTTTCCTT--CA 55501
Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673
||||||||||| ||||||||||| ||||||| || ||||| | |||||||| || |
Sbjct 55502 AAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTCTCATCATTTCCT--C 55559
Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731
| | | |||| | | ||| | || || |||||||| ||||||| ||||| ||||
Sbjct 55560 CTCCAATTCCAGTTCCTCTCTGCCTCCCAACAGCATCAATTTCATCAACAAAGACAATGC 55619
Query 9732 ATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790
| ||| ||| | | | | ||| ||| ||||| || || || ||| || ||||||
Sbjct 55620 AGGGTGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACCCGAGAGGCACCAACACCA 55678
Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849
|| |||||||| || || | || | ||| || | || || || ||| | ||| ||
Sbjct 55679 ACGAACATCTCTACGAACTCTGAACCAGAA-ATGGAGAAAAATGGAACACCTGCTTCGCC 55737
Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888
||||| || || || | |||||| || || |||||
Sbjct 55738 AGCAATTGCCTTCGCCAGCAAAGTCTTCCCAGTTCCTGG 55776
>seq3997
Length=108068
Score = 127 bits (140), Expect = 2e-24
Identities = 304/452 (67%), Gaps = 6/452 (1%)
Strand=Plus/Minus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
|| || || ||||| ||| | || || ||||| || ||||| ||||||||||| || |
Sbjct 89945 TCGTTCGCCGAGCGTCTCGTGGCGTTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGC 89886
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|||||||| || | ||||||||||||||| || | ||||| || || ||||| |||
Sbjct 89885 TTCTGCGCGATATTTTGGCTCAAGAAGCGCGGGTTAATGCCGGGACTGACTTTCTCGAAC 89826
Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTA 94974
||||| ||||| || |||||||| || ||| || || ||| || | | | |||
Sbjct 89825 GAGCTAATCTCGCGAGACGAGGGCCTTCACTGCGACTTCGCGTGCTTGCTGTACGAGTTA 89766
Query 94975 TTGCGTATTAAAC-CAACGACTGAGACTATTCA-TTCTATTGTTAAGGAAGCCGTTGAGA 95032
|| || || | | ||| ||| | ||||| ||| || | || || || || |
Sbjct 89765 CTGAGTCAGAAGCTGAGCGA-GGAG-CGATTCAGGGGTATCGTGAGCGACGCGGTGGATA 89708
Query 95033 TTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAA 95092
| |||| || ||| | | || || || || ||||| || | |||||||| |||
Sbjct 89707 TAGAGAGAGAGTTCGTGTGCGACGCTCTGCCGTGCGCCCTGGTGGGTATGAACGGTGATC 89648
Query 95093 AAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTC 95152
|||| || || |||| ||| | ||||| | ||| | | ||| ||
Sbjct 89647 TGATGTGCCGGTACATCGAGTTTGTGGCGGATAGGCTTTTGGTTGCG-TTGGGATGTGGG 89589
Query 95153 CAATTTGGAACTCCA-AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAG 95211
||||| | || ||||||| ||||||| |||||| || || | | ||||||
Sbjct 89588 AAATTTTACGGTGCACAGAATCCGTTTGACTGGATGGAGCTGATCAGTTTGCAGGGGAAG 89529
Query 95212 ACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243
|| || ||||| || |||||||||||||| ||
Sbjct 89528 ACGAATTTCTTTGAGAAGAGGGTTGGGGAGTA 89497
>seq6526
Length=28452
Score = 118 bits (130), Expect = 1e-21
Identities = 112/143 (78%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854
|| || || || ||||| |||| || ||||| | ||||| ||||||||||| || |
Sbjct 22053 TCGTTCGCCGAAAGACTCATCGCGTTCGCGTGCTTCGAGGGGATCTTCTTCTCCGGAAGC 21994
Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914
|||||||| || | ||||||||| ||||| || | ||||| |||||| |||||| |||
Sbjct 21993 TTCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTCGAAC 21934
Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937
||||| ||||| || ||||||||
Sbjct 21933 GAGCTGATCTCGCGAGACGAGGG 21911
>seq838
Length=146170
Score = 84.2 bits (92), Expect = 3e-11
Identities = 251/382 (66%), Gaps = 8/382 (2%)
Strand=Plus/Plus
Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672
||| ||||||||||||||||| || || |||||||| || || | ||||||||| |
Sbjct 102974 AAACCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCC--A 103031
Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730
| | | | || || | | ||| | || || |||||||||||||| || || || |||
Sbjct 103032 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCTATAAACACAATG 103091
Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788
|| || | |||| | || || ||||| | |||| || | | || |||||||
Sbjct 103092 CAAGG-CGCTTTT-GACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCCCCCACAC 103149
Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848
| ||||||| || ||||| | || || | |||| | ||| || || | ||| |
Sbjct 103150 CCACAAACAATTCTACAAATTCTGATGCAGCACATGAAAAGAATGGCACGCCGGCTTCTC 103209
Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908
| || | || | || | || ||||| || ||||| ||| ||| | || || |
Sbjct 103210 CGGCCACCGCCCTTGCCAACAGGGTCTTCCCGGTACCAGGCGGCCCCACCAGAAGACACC 103269
Query 9909 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968
|| ||||| || || || || |||| | || || | || | ||||| ||||
Sbjct 103270 CTTTCGGAATTTTTGCTCCGAGGGCAGTGTATTTATCTGGATTTTTCAAGAAATCTACAA 103329
Query 9969 TTTCTTCCAATTCATCTTTGGC 9990
||| | ||||| ||||||
Sbjct 103330 CTTCCTGTAATTCCAATTTGGC 103351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583065983602040
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