Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq15031 150 2e-31 seq8535 129 7e-25 seq15694 127 2e-24 seq3997 127 2e-24 seq6526 118 1e-21 seq838 84.2 3e-11 >seq15031 Length=67428 Score = 150 bits (166), Expect = 2e-31 Identities = 289/417 (69%), Gaps = 12/417 (3%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9613 |||||| |||||| | || || || || || || |||| | ||| |||||| || || Sbjct 39397 ATCAAGAATATCAGCACGGTTAGTTGCTGCAATAACAATGACACCAGTGTTTCCTT--CA 39454 Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||||||||| ||||||||||| ||||||| || ||||| | ||||||||| || | Sbjct 39455 AAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTTTCATCATTTCCT--C 39512 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | |||| | | |||| | || || |||||||| ||||||| ||||| |||| Sbjct 39513 CTCCGATTCCAGTTCCTCTTTGCCTCCCAACAGCATCAATTTCATCAACAAAGACAATGC 39572 Query 9732 ATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 | ||| ||| | | | | ||| ||| ||||| || || || ||| || |||||| Sbjct 39573 AGGGTGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGGACCCGAGAGGCACCAACACCA 39631 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 ||||||||||| || || | || | ||| || | || || || ||| | |||||| Sbjct 39632 ACAAACATCTCTACGAACTCTGAACCAGAA-ATGGAGAAAAATGGAACACCTGCTTCACC 39690 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 9909 ||||| || ||| || || ||||| || || ||||| ||| | || || | || Sbjct 39691 AGCAATCGCCTTGGCCAGCAGGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACTCC 39750 Query 9910 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 9966 | || || || ||| | || | | ||||| || | ||| ||||| ||||| Sbjct 39751 TTTAGGGATACGAGCCCCAACTGCAGTGAACCTCTCGGGCTTCTTCAGAAACTCCAC 39807 >seq8535 Length=22056 Score = 129 bits (142), Expect = 7e-25 Identities = 174/242 (72%), Gaps = 9/242 (4%) Strand=Plus/Minus Query 94699 GCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCG 94758 || |||||||| | ||||| | || ||| | || || || || | |||| || || Sbjct 6852 GCCGAGAAGAACCGCCTCTTCCACGCGATCGAGACCGTCCCTTGCGTGGAAAAAAAGGCA 6793 Query 94759 GATTGGGCTATGAAGTGGTTTGA---TACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTC 94815 | ||||| |||||||| | || | || | ||| || || || | ||| || Sbjct 6792 AAGTGGGCGTTGAAGTGGATCGACGGTTCAGAATCG------TTCGCCGAAAGGCTCATC 6739 Query 94816 GCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTC 94875 ||||| ||||| || ||||| ||||||||||| || ||||||||| || | ||||||| Sbjct 6738 GCATTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGCGCGATATTTTGGCTC 6679 Query 94876 AAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAG 94935 || ||||| || | ||||| |||||| ||||| |||||||| ||||| || |||||| Sbjct 6678 AAAAAGCGCGGGTTAATGCCGGGTCTCACTTTCTCGAACGAGCTGATCTCGCGAGACGAG 6619 Query 94936 GG 94937 || Sbjct 6618 GG 6617 >seq15694 Length=177509 Score = 127 bits (140), Expect = 2e-24 Identities = 237/339 (70%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 9556 ATCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCA 9613 |||||| ||||| | || || || || || || |||| ||||| |||||| || || Sbjct 55444 ATCAAGAATATCTGCACGGTTAGTTGCCGCAATTACAATGATACCAGTGTTTCCTT--CA 55501 Query 9614 AAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 9673 ||||||||||| ||||||||||| ||||||| || ||||| | |||||||| || | Sbjct 55502 AAACCATCCATTTCTGTCAAAAGCTGGTTAAGGGTCTGTTCTCTCTCATCATTTCCT--C 55559 Query 9674 ATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 9731 | | | |||| | | ||| | || || |||||||| ||||||| ||||| |||| Sbjct 55560 CTCCAATTCCAGTTCCTCTCTGCCTCCCAACAGCATCAATTTCATCAACAAAGACAATGC 55619 Query 9732 ATGGTTGATT-TTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 9790 | ||| ||| | | | | ||| ||| ||||| || || || ||| || |||||| Sbjct 55620 AGGGTGCATTCTCCTTGGCCTTCTTGAAA-AGATCACGAACCCGAGAGGCACCAACACCA 55678 Query 9791 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 9849 || |||||||| || || | || | ||| || | || || || ||| | ||| || Sbjct 55679 ACGAACATCTCTACGAACTCTGAACCAGAA-ATGGAGAAAAATGGAACACCTGCTTCGCC 55737 Query 9850 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 ||||| || || || | |||||| || || ||||| Sbjct 55738 AGCAATTGCCTTCGCCAGCAAAGTCTTCCCAGTTCCTGG 55776 >seq3997 Length=108068 Score = 127 bits (140), Expect = 2e-24 Identities = 304/452 (67%), Gaps = 6/452 (1%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || ||||| ||| | || || ||||| || ||||| ||||||||||| || | Sbjct 89945 TCGTTCGCCGAGCGTCTCGTGGCGTTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGC 89886 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | ||||||||||||||| || | ||||| || || ||||| ||| Sbjct 89885 TTCTGCGCGATATTTTGGCTCAAGAAGCGCGGGTTAATGCCGGGACTGACTTTCTCGAAC 89826 Query 94915 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTGGAACTTTTCAAATTA 94974 ||||| ||||| || |||||||| || ||| || || ||| || | | | ||| Sbjct 89825 GAGCTAATCTCGCGAGACGAGGGCCTTCACTGCGACTTCGCGTGCTTGCTGTACGAGTTA 89766 Query 94975 TTGCGTATTAAAC-CAACGACTGAGACTATTCA-TTCTATTGTTAAGGAAGCCGTTGAGA 95032 || || || | | ||| ||| | ||||| ||| || | || || || || | Sbjct 89765 CTGAGTCAGAAGCTGAGCGA-GGAG-CGATTCAGGGGTATCGTGAGCGACGCGGTGGATA 89708 Query 95033 TTGAGAAAGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTATGAATTCTGAAA 95092 | |||| || ||| | | || || || || ||||| || | |||||||| ||| Sbjct 89707 TAGAGAGAGAGTTCGTGTGCGACGCTCTGCCGTGCGCCCTGGTGGGTATGAACGGTGATC 89648 Query 95093 AAATGTCTGAATATATTGAGTATGTATCTGATAGATTGTTGAAGCAGATCGGGGTGCCTC 95152 |||| || || |||| ||| | ||||| | ||| | | ||| || Sbjct 89647 TGATGTGCCGGTACATCGAGTTTGTGGCGGATAGGCTTTTGGTTGCG-TTGGGATGTGGG 89589 Query 95153 CAATTTGGAACTCCA-AGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAG 95211 ||||| | || ||||||| ||||||| |||||| || || | | |||||| Sbjct 89588 AAATTTTACGGTGCACAGAATCCGTTTGACTGGATGGAGCTGATCAGTTTGCAGGGGAAG 89529 Query 95212 ACAAACTTCTTCGAAAAGAGGGTTGGGGACTA 95243 || || ||||| || |||||||||||||| || Sbjct 89528 ACGAATTTCTTTGAGAAGAGGGTTGGGGAGTA 89497 >seq6526 Length=28452 Score = 118 bits (130), Expect = 1e-21 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 94795 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 94854 || || || || ||||| |||| || ||||| | ||||| ||||||||||| || | Sbjct 22053 TCGTTCGCCGAAAGACTCATCGCGTTCGCGTGCTTCGAGGGGATCTTCTTCTCCGGAAGC 21994 Query 94855 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 94914 |||||||| || | ||||||||| ||||| || | ||||| |||||| |||||| ||| Sbjct 21993 TTCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTCGAAC 21934 Query 94915 GAGCTTATCTCTCGTGACGAGGG 94937 ||||| ||||| || |||||||| Sbjct 21933 GAGCTGATCTCGCGAGACGAGGG 21911 >seq838 Length=146170 Score = 84.2 bits (92), Expect = 3e-11 Identities = 251/382 (66%), Gaps = 8/382 (2%) Strand=Plus/Plus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||| ||||||||||||||||| || || |||||||| || || | ||||||||| | Sbjct 102974 AAACCCATCCATCTCTGTCAACAGCTGATTAATAGTCTGCTCTCTCTCATCATTCCC--A 103031 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | | | || || | | ||| | || || |||||||||||||| || || || ||| Sbjct 103032 CCTCCAAGCCCCGCCCCTCTCTGCCTCCCAACCGCATCAATCTCATCTATAAACACAATG 103091 Query 9731 CATGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTGGCGCCCACAC 9788 || || | |||| | || || ||||| | |||| || | | || ||||||| Sbjct 103092 CAAGG-CGCTTTT-GACTTCGCCTTCTCAAACAAGTCCCTAACTCTCGAAGCCCCCACAC 103149 Query 9789 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 9848 | ||||||| || ||||| | || || | |||| | ||| || || | ||| | Sbjct 103150 CCACAAACAATTCTACAAATTCTGATGCAGCACATGAAAAGAATGGCACGCCGGCTTCTC 103209 Query 9849 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 9908 | || | || | || | || ||||| || ||||| ||| ||| | || || | Sbjct 103210 CGGCCACCGCCCTTGCCAACAGGGTCTTCCCGGTACCAGGCGGCCCCACCAGAAGACACC 103269 Query 9909 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 9968 || ||||| || || || || |||| | || || | || | ||||| |||| Sbjct 103270 CTTTCGGAATTTTTGCTCCGAGGGCAGTGTATTTATCTGGATTTTTCAAGAAATCTACAA 103329 Query 9969 TTTCTTCCAATTCATCTTTGGC 9990 ||| | ||||| |||||| Sbjct 103330 CTTCCTGTAATTCCAATTTGGC 103351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583065983602040