Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq8535 163 3e-35 seq6526 161 1e-34 seq3997 145 8e-30 >seq8535 Length=22056 Score = 163 bits (180), Expect = 3e-35 Identities = 308/443 (70%), Gaps = 14/443 (3%) Strand=Plus/Minus Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737 ||||||| |||| ||||||| ||||| ||||||||||| || ||||| || || Sbjct 7051 CGACGAGAAGCACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCAGATGGCATCGT 6992 Query 59738 GATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | || | ||| ||||| || || | ||||| || || | Sbjct 6991 CCTCGAGAACCTCGC--TGGCCGATTCATGAAGGAGGTACAAGTCGCCGAAGCGCGCGCC 6934 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | || ||| || |||| ||||||||||| | |||| ||| || | Sbjct 6933 TTCTACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACAGCCTCCTGCT 6875 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GT 59913 ||| | ||||||| ||| |||||| | || |||| || || ||||| || Sbjct 6874 CGAATCCTACATCAAGGACTCGGCCGAGAAGAACCGCCTCTTCCACGCGATCGAGACCGT 6815 Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA--GTCCTGGAGCAT 59970 ||| || || || |||| ||| | ||||| || ||||||| || || | || || Sbjct 6814 CCCTTGC-GTGGAAAAAAAGGCAAAGTGGGCGTTGAAGTGGATCGACGGTTC---AGAAT 6759 Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030 | || || || | ||||| || || || |||||||| || ||||||||||| || | Sbjct 6758 CGTTCGCCGAAAGGCTCATCGCATTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCT 6699 Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090 |||| || || || |||||||||||||| || | |||||||| || | |||||| |||| Sbjct 6698 TCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACTTTCTCGAACG 6639 Query 60091 AGCTGATTTCCCGGGACGAGGGC 60113 ||||||| || || ||||||||| Sbjct 6638 AGCTGATCTCGCGAGACGAGGGC 6616 >seq6526 Length=28452 Score = 161 bits (178), Expect = 1e-34 Identities = 384/565 (68%), Gaps = 23/565 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || | ||||||| | | |||| |||| ||||| || | ||||||||| Sbjct 22464 TTCCCGATCCAGTACCCGCAGATCTGGGAGATGTACAAGAAGGCTGAAGCGTCATTCTGG 22405 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAG-ACCTGAAGG--ATTGGGACAAG---CTCAAT 59675 | | |||||| | || || | || || ||| || | | |||||| || |||| Sbjct 22404 ACGGCGGAGGAGGTGGATCT-GTCGCAGGACC--AACGCCACTGGGACGAGGCCCTCACC 22348 Query 59676 TACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATT 59735 ||||||| |||| |||||||| ||||| ||||||||||| || || || || Sbjct 22347 GCCGACGAGAAGCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATC 22288 Query 59736 GTGATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGT 59793 || | || || | | | | | |||| ||||| || || ||||||| || ||| Sbjct 22287 GTCCTCGAGAACCTCGCC--GGCCGTTTCATGAAGGAGGTACAAGTTGCCGAAGCGCGGG 22230 Query 59794 CGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATG 59852 | ||||||| | || ||| || |||| ||||||||||| | |||| ||| || Sbjct 22229 CCTTCTACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACAGCCTCCTG 22171 Query 59853 ATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG 59912 |||| | ||| ||| |||| ||||||| | || |||| || || ||||| Sbjct 22170 CTCGAATCCTACATCAGGGACCCGGCCGAGAAGGACCGCCTCTTCCACGCGATCGAGACC 22111 Query 59913 -TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA--GTCCTGGAGC 59968 |||| || || || |||| || | ||||| || | ||||| || || | || Sbjct 22110 ATCCCTTGC-GTGGAAAAAAAGGCCAAGTGGGCGTTGAAATGGATCGACGGTTC---AGA 22055 Query 59969 ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTC 60028 ||| || || || | ||||| || || || ||| | || || ||||||||||| || Sbjct 22054 ATCGTTCGCCGAAAGACTCATCGCGTTCGCGTGCTTCGAGGGGATCTTCTTCTCCGGAAG 21995 Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088 ||||| || || || |||||||||||||| || | |||||||| || | ||||| || Sbjct 21994 CTTCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTCGAA 21935 Query 60089 CGAGCTGATTTCCCGGGACGAGGGC 60113 ||||||||| || || ||||||||| Sbjct 21934 CGAGCTGATCTCGCGAGACGAGGGC 21910 >seq3997 Length=108068 Score = 145 bits (160), Expect = 8e-30 Identities = 375/563 (67%), Gaps = 9/563 (2%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || | ||||||| | | |||| |||| ||||| || | || |||||| Sbjct 90356 TTCCCGATCCAGTACCCGTAGATCTGGGAGATGTACAAGAAGGCAGAGGCGTCGTTCTGG 90297 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 | | |||||| | |||||| ||| ||||| | |||||| | || | | Sbjct 90296 ACGGCGGAGGAGGTGGACCTCTCCGCTGACCTTCGCCACTGGGACCAAACCCTAACCGCC 90237 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 |||||| ||| |||||| ||||| ||||||||||| || || || || || Sbjct 90236 GACGAGAGGCACTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTC 90177 Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798 | || ||| | | | ||| ||||| |||||| | || |||||||| | ||| Sbjct 90176 CTCGAGAATCTCGCCGGCCGCTTCATGAAGGAGGTCCAGGTCGCTGAGGCCCGCGCTTTC 90117 Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857 || | | ||| ||| | |||| ||||||||||||| |||| ||| | |||| Sbjct 90116 TATGGCTTCCAGATCGCG-ATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGA 90058 Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916 | ||||||| | |||||| | || |||| || || ||||| |||| Sbjct 90057 ATCCTACATCAAGGACTCCTCCGAGAAGCACCGCCTCTTCCACGCAATCGAGACCATCCC 89998 Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTT 59975 || || | || || | |||||| || | ||||| || || || ||| || Sbjct 89997 TTGC-GTGGTGAAGAAGGCCAAGTGGGCCCTGAAATGGATCGACGGCTC-AGAATCGTTC 89940 Query 59976 GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGT 60035 || | |||||| | || || || |||||||| || ||||||||||| || ||||| Sbjct 89939 GCCGAGCGTCTCGTGGCGTTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGC 89880 Query 60036 GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTG 60095 || || || |||||||| ||||| || | |||||||| |||| |||||| |||||||| Sbjct 89879 GCGATATTTTGGCTCAAGAAGCGCGGGTTAATGCCGGGACTGACTTTCTCGAACGAGCTA 89820 Query 60096 ATTTCCCGGGACGAGGGCCTCCA 60118 || || || ||||||||||| || Sbjct 89819 ATCTCGCGAGACGAGGGCCTTCA 89797 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548341585860240