Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_028108.1
Length=171454
Score E
Sequences producing significant alignments: (Bits) Value
seq8535 163 3e-35
seq6526 161 1e-34
seq3997 145 8e-30
>seq8535
Length=22056
Score = 163 bits (180), Expect = 3e-35
Identities = 308/443 (70%), Gaps = 14/443 (3%)
Strand=Plus/Minus
Query 59678 CGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGT 59737
||||||| |||| ||||||| ||||| ||||||||||| || ||||| || ||
Sbjct 7051 CGACGAGAAGCACTTCATCACCCACGTCCTCGCCTTCTTCGCCGCCTCAGATGGCATCGT 6992
Query 59738 GATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795
| || || | | || | ||| ||||| || || | ||||| || || |
Sbjct 6991 CCTCGAGAACCTCGC--TGGCCGATTCATGAAGGAGGTACAAGTCGCCGAAGCGCGCGCC 6934
Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854
||||||| | || ||| || |||| ||||||||||| | |||| ||| || |
Sbjct 6933 TTCTACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACAGCCTCCTGCT 6875
Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC-GT 59913
||| | ||||||| ||| |||||| | || |||| || || ||||| ||
Sbjct 6874 CGAATCCTACATCAAGGACTCGGCCGAGAAGAACCGCCTCTTCCACGCGATCGAGACCGT 6815
Query 59914 CCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA--GTCCTGGAGCAT 59970
||| || || || |||| ||| | ||||| || ||||||| || || | || ||
Sbjct 6814 CCCTTGC-GTGGAAAAAAAGGCAAAGTGGGCGTTGAAGTGGATCGACGGTTC---AGAAT 6759
Query 59971 CATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGT 60030
| || || || | ||||| || || || |||||||| || ||||||||||| || |
Sbjct 6758 CGTTCGCCGAAAGGCTCATCGCATTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCT 6699
Query 60031 TCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACG 60090
|||| || || || |||||||||||||| || | |||||||| || | |||||| ||||
Sbjct 6698 TCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACTTTCTCGAACG 6639
Query 60091 AGCTGATTTCCCGGGACGAGGGC 60113
||||||| || || |||||||||
Sbjct 6638 AGCTGATCTCGCGAGACGAGGGC 6616
>seq6526
Length=28452
Score = 161 bits (178), Expect = 1e-34
Identities = 384/565 (68%), Gaps = 23/565 (4%)
Strand=Plus/Minus
Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621
|| || || | ||||||| | | |||| |||| ||||| || | |||||||||
Sbjct 22464 TTCCCGATCCAGTACCCGCAGATCTGGGAGATGTACAAGAAGGCTGAAGCGTCATTCTGG 22405
Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAG-ACCTGAAGG--ATTGGGACAAG---CTCAAT 59675
| | |||||| | || || | || || ||| || | | |||||| || ||||
Sbjct 22404 ACGGCGGAGGAGGTGGATCT-GTCGCAGGACC--AACGCCACTGGGACGAGGCCCTCACC 22348
Query 59676 TACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATT 59735
||||||| |||| |||||||| ||||| ||||||||||| || || || ||
Sbjct 22347 GCCGACGAGAAGCACTTCATCAAACACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATC 22288
Query 59736 GTGATGGAAAATATAGACATGAACTTTTCC--AAGGATGTCCAGATTGCCGAGGCCCGGT 59793
|| | || || | | | | | |||| ||||| || || ||||||| || |||
Sbjct 22287 GTCCTCGAGAACCTCGCC--GGCCGTTTCATGAAGGAGGTACAAGTTGCCGAAGCGCGGG 22230
Query 59794 CGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATG 59852
| ||||||| | || ||| || |||| ||||||||||| | |||| ||| ||
Sbjct 22229 CCTTCTACGGCTTCCAAATCGC-CATCGAGAACATCCACTCCGAAATGTACAGCCTCCTG 22171
Query 59853 ATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG 59912
|||| | ||| ||| |||| ||||||| | || |||| || || |||||
Sbjct 22170 CTCGAATCCTACATCAGGGACCCGGCCGAGAAGGACCGCCTCTTCCACGCGATCGAGACC 22111
Query 59913 -TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA--GTCCTGGAGC 59968
|||| || || || |||| || | ||||| || | ||||| || || | ||
Sbjct 22110 ATCCCTTGC-GTGGAAAAAAAGGCCAAGTGGGCGTTGAAATGGATCGACGGTTC---AGA 22055
Query 59969 ATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTC 60028
||| || || || | ||||| || || || ||| | || || ||||||||||| ||
Sbjct 22054 ATCGTTCGCCGAAAGACTCATCGCGTTCGCGTGCTTCGAGGGGATCTTCTTCTCCGGAAG 21995
Query 60029 GTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAA 60088
||||| || || || |||||||||||||| || | |||||||| || | ||||| ||
Sbjct 21994 CTTCTGCGCGATATTTTGGCTCAAAAAGCGCGGGTTAATGCCGGGTCTCACCTTCTCGAA 21935
Query 60089 CGAGCTGATTTCCCGGGACGAGGGC 60113
||||||||| || || |||||||||
Sbjct 21934 CGAGCTGATCTCGCGAGACGAGGGC 21910
>seq3997
Length=108068
Score = 145 bits (160), Expect = 8e-30
Identities = 375/563 (67%), Gaps = 9/563 (2%)
Strand=Plus/Minus
Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621
|| || || | ||||||| | | |||| |||| ||||| || | || ||||||
Sbjct 90356 TTCCCGATCCAGTACCCGTAGATCTGGGAGATGTACAAGAAGGCAGAGGCGTCGTTCTGG 90297
Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678
| | |||||| | |||||| ||| ||||| | |||||| | || | |
Sbjct 90296 ACGGCGGAGGAGGTGGACCTCTCCGCTGACCTTCGCCACTGGGACCAAACCCTAACCGCC 90237
Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738
|||||| ||| |||||| ||||| ||||||||||| || || || || ||
Sbjct 90236 GACGAGAGGCACTTCATCTCCCACGTCCTCGCCTTCTTCGCAGCCTCCGACGGCATCGTC 90177
Query 59739 ATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTC 59798
| || ||| | | | ||| ||||| |||||| | || |||||||| | |||
Sbjct 90176 CTCGAGAATCTCGCCGGCCGCTTCATGAAGGAGGTCCAGGTCGCTGAGGCCCGCGCTTTC 90117
Query 59799 TACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGA 59857
|| | | ||| ||| | |||| ||||||||||||| |||| ||| | ||||
Sbjct 90116 TATGGCTTCCAGATCGCG-ATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGA 90058
Query 59858 TAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCC 59916
| ||||||| | |||||| | || |||| || || ||||| ||||
Sbjct 90057 ATCCTACATCAAGGACTCCTCCGAGAAGCACCGCCTCTTCCACGCAATCGAGACCATCCC 89998
Query 59917 CCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTGGAGCATCATTT 59975
|| || | || || | |||||| || | ||||| || || || ||| ||
Sbjct 89997 TTGC-GTGGTGAAGAAGGCCAAGTGGGCCCTGAAATGGATCGACGGCTC-AGAATCGTTC 89940
Query 59976 GCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGT 60035
|| | |||||| | || || || |||||||| || ||||||||||| || |||||
Sbjct 89939 GCCGAGCGTCTCGTGGCGTTCGCGTGCGTGGAGGGGATCTTCTTCTCCGGAAGCTTCTGC 89880
Query 60036 GCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTG 60095
|| || || |||||||| ||||| || | |||||||| |||| |||||| ||||||||
Sbjct 89879 GCGATATTTTGGCTCAAGAAGCGCGGGTTAATGCCGGGACTGACTTTCTCGAACGAGCTA 89820
Query 60096 ATTTCCCGGGACGAGGGCCTCCA 60118
|| || || ||||||||||| ||
Sbjct 89819 ATCTCGCGAGACGAGGGCCTTCA 89797
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 548341585860240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |