Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6526 159 4e-34 seq8535 123 3e-23 seq3997 114 1e-20 seq5553 93.3 5e-14 seq13237 89.7 6e-13 seq11558 89.7 6e-13 seq16862 87.8 2e-12 seq8013 86.0 7e-12 seq8556 82.4 8e-11 >seq6526 Length=28452 Score = 159 bits (176), Expect = 4e-34 Identities = 366/538 (68%), Gaps = 21/538 (4%) Strand=Plus/Plus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| |||| || |||| |||| || ||||| || | || || ||||| | || Sbjct 21905 TGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAGGTGAGACCCGGCATTAACCCG 21964 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 ||||| || | |||||| || || |||||| || ||||||||| || |||| ||| Sbjct 21965 CGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCGAAGCAC 22024 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--GTC-ATCCAAGTCTGAGCC 74939 || || |||| || | || ||||||| | || ||| ||| ||||| || ||| Sbjct 22025 GCGAACGCGATGAGTCTTTCGGCGAACGAT---TCTGAACCGTCGATCCATTTCAACGCC 22081 Query 74940 CATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTC 74999 || | || ||| || || ||||| || |||||||| |||||||||| ||||| Sbjct 22082 CACTTGGCCTTTTTTTCCACGCAAGGGATGGTCTCGATCGCGTGGAAGAGGCGGTCCTTC 22141 Query 75000 TCTTCGGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGA 75058 || | || ||| ||| | || | || | || || |||| | || || || || Sbjct 22142 TCGGCCGGGTCCCTGATGTAGGAT-TCGAGCAGGAGGCTGTACATTTCGGAGTGGATGTT 22200 Query 75059 CTCGTTGAACGACTGGTACGC-GTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT-- 75115 |||| || ||| | | | || |||||| | |||||| || |||| ||||| ||||| Sbjct 22201 CTCGATGG-CGATTTGGAAGCCGTAGAAGGCCCGCGCTTCGGCAACTTGTACCTCCTTCA 22259 Query 75116 TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAG 75175 ||||| | | ||| ||||| | |||||||||||| ||||||||||| || || || Sbjct 22260 TGAAACGGCC--GGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAG 22317 Query 75176 TACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGTCCCAAT--CCTTCAGG 75230 || |||||| ||||| ||| ||| | ||||| | |||||| | | || || Sbjct 22318 GACGTGTTTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCGTCCCAGTGGCGTT--GG 22375 Query 75231 TCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 ||| || || ||| | |||||| |||||||||| | | ||||| ||||||| Sbjct 22376 TCCTGCGACAGATCCACCTCCTCCGCCGTCCAGAATGACGCTTCAGCCTTCTTGTACA 22433 >seq8535 Length=22056 Score = 123 bits (136), Expect = 3e-23 Identities = 358/538 (67%), Gaps = 21/538 (4%) Strand=Plus/Plus Query 74763 TGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCA 74822 ||| |||| || |||| |||| || ||||| || | || || ||||| | || Sbjct 6611 TGCAAGCCCTCGTCTCGCGAGATCAGCTCGTTCGAGAAAGTGAGACCCGGCATTAACCCG 6670 Query 74823 CGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACAC 74882 ||||| || | |||||| || || |||||| || ||||||||| || || || ||| Sbjct 6671 CGCTTTTTGAGCCAAAATATCGCGCAGAAGCTTCCGGAGAAGAAGATCCCCTCCACGCAC 6730 Query 74883 GCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCGGAA--GTC-ATCCAAGTCTGAGCC 74939 || || |||| || | || ||||||| | || ||| ||| ||||| || ||| Sbjct 6731 GCGAATGCGATGAGCCTTTCGGCGAACGAT---TCTGAACCGTCGATCCACTTCAACGCC 6787 Query 74940 CATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTC 74999 || | || ||| || || |||||| || |||||||| |||||||||| |||| Sbjct 6788 CACTTTGCCTTTTTTTCCACGCAAGGGACGGTCTCGATCGCGTGGAAGAGGCGGTTCTTC 6847 Query 75000 TCTTCGGGATCCTTGACG-AGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGA 75058 || | | ||||||| | || | || | || || |||| | || || || || Sbjct 6848 TCGGCCGAGTCCTTGATGTAGGAT-TCGAGCAGGAGGCTGTACATTTCGGAGTGGATGTT 6906 Query 75059 CTCGTTGAACGACTGGTACGC-GTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT-- 75115 |||| || ||| | | | || |||||| | ||||| || || | ||||| ||||| Sbjct 6907 CTCGATGG-CGATTTGGAAGCCGTAGAAGGCGCGCGCTTCGGCGACTTGTACCTCCTTCA 6965 Query 75116 TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAG 75175 |||| || ||| ||||| | ||||||||| || ||||||||||| || || || Sbjct 6966 TGAATCGGCCAG--CGAGGTTCTCGAGGACGATGCCATCTGAGGCGGCGAAGAAGGCGAG 7023 Query 75176 TACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGTCCCAAT--CCTTCAGG 75230 || |||| ||||| ||| ||| | ||||| | ||||| | | || || Sbjct 7024 GACGTGGGTGATGAAGTGCTTCTCGTCGGCGGTGAGGGCCTCATCCCAGTGGCGTT--GG 7081 Query 75231 TCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCCTTTTTGTACA 75288 ||| || || ||| | ||||| |||||||||| | | ||||| ||||||| Sbjct 7082 TCCTGCGACAGATCCACTTCCTCCGCCGTCCAGAACGACGCTTCGGCCTTCTTGTACA 7139 >seq3997 Length=108068 Score = 114 bits (126), Expect = 1e-20 Identities = 342/513 (67%), Gaps = 25/513 (5%) Strand=Plus/Plus Query 74790 TCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAG 74849 || ||||| || | || || ||||| | || |||||||| | |||||| || || ||| Sbjct 89824 TCGTTCGAGAAAGTCAGTCCCGGCATTAACCCGCGCTTCTTGAGCCAAAATATCGCGCAG 89883 Query 74850 AAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAAC 74909 ||| || ||||||||| || || || ||||| || || || || || | |||||| Sbjct 89884 AAGCTTCCGGAGAAGAAGATCCCCTCCACGCACGCGAACGCCACGAGACGCTCGGCGAAC 89943 Query 74910 GGTGCATCGGAAGTC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGC---AGG 74965 | | | | | ||| ||||| || | ||||| | || || || ||| | ||| Sbjct 89944 GATTC-TGAGCCGTCGATCCATTTCAGGGCCCACTTGGCCTTC---TTCACCACGCAAGG 89999 Query 74966 GACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACG-AGCTTGT 75024 || || ||||| || |||||||||| |||||| || ||||||| | || | | Sbjct 90000 GATGGTCTCGATTGCGTGGAAGAGGCGGTGCTTCTCGGAGGAGTCCTTGATGTAGGAT-T 90058 Query 75025 CAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAG 75083 | | | || |||| |||| || || || |||| | ||| |||| | | ||| Sbjct 90059 CGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATCG-CGATCTGGAAGCCATAG 90117 Query 75084 AAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGAAAAATTCATGTCGATATTCTCCA 75141 |||| || ||||| || | ||| || ||||| |||| | | ||| |||||| | Sbjct 90118 AAAGCGCGGGCCTCAGCGACCTGGACCTCCTTCATGAAGCGGCC--GGCGAGATTCTCGA 90175 Query 75142 TGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCAT 75201 |||||||||||| ||||| ||||| || || || || ||| ||||| | ||| | Sbjct 90176 GGACGATGCCGTCGGAGGCTGCGAAGAAGGCGAGGACGTGGGAGATGAAGTGCCTCTCGT 90235 Query 75202 CGTCAGTGAG---TTTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCG 75258 || | || || || |||||| | ||||| | | | || | |||||| ||| Sbjct 90236 CGGCGGTTAGGGTTTGGTCCCAGTGGCGAAGGTCAGCGGAGAGGTCCACCTCCTCCGCCG 90295 Query 75259 TCCAGAA--ACTCCCAATC-GCCTTTTTGTACA 75288 ||||||| || || || ||||| ||||||| Sbjct 90296 TCCAGAACGACGCC---TCTGCCTTCTTGTACA 90325 >seq5553 Length=15020 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 8698 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 8639 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 8638 TGAGCTACGAAAGCAA 8623 >seq13237 Length=26406 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 7799 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 7740 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 7739 TGAGCTACGAAAGC 7726 >seq11558 Length=50330 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 49375 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 49434 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 49435 TGAGCTACGAAAGC 49448 >seq16862 Length=67317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Minus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 35497 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 35438 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 35437 CTGAGCTATGAAAGC 35423 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/75 (87%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 79624 CTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAA 79682 |||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 38877 CTGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAA 38936 Query 79683 TTGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 38937 CTGAGCTATGAAAGC 38951 >seq8013 Length=74303 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 54673 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 54614 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 54613 TGAGCTATGAAAGC 54600 >seq8556 Length=213723 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79622 GACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACC 79680 || |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||| Sbjct 198331 GATTGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACC 198272 Query 79681 AATTGAGCTACGAAAGC 79697 || |||||||||| ||| Sbjct 198271 AACTGAGCTACGAGAGC 198255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547033223015800