Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq2905 102 6e-17 seq22277 87.8 1e-12 seq21627 87.8 1e-12 >seq2905 Length=56485 Score = 102 bits (112), Expect = 6e-17 Identities = 164/234 (70%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| || || |||||||| || || ||||| |||||| | || |||||| | Sbjct 52532 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACTATTACCCTAGAGGTCGAATCC 52591 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||||| || ||||| ||||| ||| || ||||| ||||| |||| | Sbjct 52592 TCCGACACCATCGACAAT--GTCAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAG 52649 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| ||| | || || ||||||||||| |||| |||| ||||| | | |||| | Sbjct 52650 ACCAGCAGCGGCTGATCTTCGCCGGAAAACAGCTGGAGGACGGACGCACCCTCGCCGACT 52709 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 |||||||||| || ||| || | || ||||| | || | ||||| |||| Sbjct 52710 ACAACATCCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGCCTCCGTGGAGGCG 52763 >seq22277 Length=3790 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| || || ||||| || || || | || || |||||| || Sbjct 1076 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAAAGCTCC 1135 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| ||| || ||||||||||| | || ||| | Sbjct 1136 GACACCATTGACAAT--GTCAAGGCAAAGATCCAGGACAAAGAAGGAATCCCACCGGACC 1193 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||||||| | || ||||||||||| || |||| |||| || | || |||| |||| Sbjct 1194 AGCAACGGCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGCCGGACTTTAGCCGACTACA 1253 Query 27968 ACATCCAAAAAGAG 27981 ||||||| || ||| Sbjct 1254 ACATCCAGAAGGAG 1267 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| || || |||||| ||||| | || ||||||||| | Sbjct 1760 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAAACGATTACCCTCGAGGTCGAAAGCTCT 1819 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| ||||| |||||| ||||| || || | || ||| | Sbjct 1820 GATACCATCGACAAT--GTCAAGGCAAAAATTCAGGACAAGGAGGGGATCCCACCGGATC 1877 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || |||||||| ||||| |||| || | |||| | | | ||||||| Sbjct 1878 AGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAGGATGGCCGCACCCTCGCGGATTACA 1937 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || || | || |||||| | || | ||||| || Sbjct 1938 ACATCCAGAAGGAATCGACCCTCCACTTGGTTCTCCGCCTCCGTGGTGG 1986 >seq21627 Length=4779 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || || ||||| || || ||||| || || || | || || |||||| || Sbjct 3706 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACCCTCGAGGTTGAAAGCTCC 3647 Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| || ||||| ||||| ||| || ||||||||||| | || ||| | Sbjct 3646 GACACCATTGACAAT--GTCAAGGCAAAGATCCAGGACAAAGAAGGAATCCCACCGGACC 3589 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||||||| | || ||||||||||| || |||| |||| || | || |||| |||| Sbjct 3588 AGCAACGGCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGCCGGACTTTAGCCGACTACA 3529 Query 27968 ACATCCAAAAAGAG 27981 ||||||| || ||| Sbjct 3528 ACATCCAGAAGGAG 3515 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| || || |||||| ||||| | || ||||||||| | Sbjct 3022 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAAACGATTACCCTCGAGGTCGAAAGCTCT 2963 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| ||||| |||||| ||||| || || | || ||| | Sbjct 2962 GATACCATTGACAAT--GTCAAGGCAAAAATTCAGGACAAGGAGGGGATCCCACCGGATC 2905 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || |||||||| ||||| | || || | |||| | | | ||||||| Sbjct 2904 AGCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCCTCGCGGATTACA 2845 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || || || | || |||||| | || | ||||| || Sbjct 2844 ACATCCAGAAGGAATCGACCCTCCACTTGGTTCTCCGCCTCCGTGGTGG 2796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355746509072367