Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_029304.1
Length=111246
Score E
Sequences producing significant alignments: (Bits) Value
seq2905 102 6e-17
seq22277 87.8 1e-12
seq21627 87.8 1e-12
>seq2905
Length=56485
Score = 102 bits (112), Expect = 6e-17
Identities = 164/234 (70%), Gaps = 4/234 (2%)
Strand=Plus/Plus
Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846
|| ||||| || || |||||||| || || ||||| |||||| | || |||||| |
Sbjct 52532 AAGATGCAGATCTTCGTGAAAACCCTAACGGGGAAGACTATTACCCTAGAGGTCGAATCC 52591
Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904
||||| || ||||| ||||| ||| || ||||| ||||| |||| |
Sbjct 52592 TCCGACACCATCGACAAT--GTCAAGGCAAAGATTCAAGACAAGGAAGGCATTCCTCCAG 52649
Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964
| ||||| ||| | || || ||||||||||| |||| |||| ||||| | | |||| |
Sbjct 52650 ACCAGCAGCGGCTGATCTTCGCCGGAAAACAGCTGGAGGACGGACGCACCCTCGCCGACT 52709
Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018
|||||||||| || ||| || | || ||||| | || | ||||| ||||
Sbjct 52710 ACAACATCCAGAAGGAGTCGACGCTCCACTTGGTGCTCCGCCTCCGTGGAGGCG 52763
>seq22277
Length=3790
Score = 87.8 bits (96), Expect = 1e-12
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || ||||| || || ||||| || || || | || || |||||| ||
Sbjct 1076 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAAAGCTCC 1135
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || ||||| ||||| ||| || ||||||||||| | || ||| |
Sbjct 1136 GACACCATTGACAAT--GTCAAGGCAAAGATCCAGGACAAAGAAGGAATCCCACCGGACC 1193
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||||||| | || ||||||||||| || |||| |||| || | || |||| ||||
Sbjct 1194 AGCAACGGCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGCCGGACTTTAGCCGACTACA 1253
Query 27968 ACATCCAAAAAGAG 27981
||||||| || |||
Sbjct 1254 ACATCCAGAAGGAG 1267
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| ||||| || || |||||| ||||| | || ||||||||| |
Sbjct 1760 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAAACGATTACCCTCGAGGTCGAAAGCTCT 1819
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || ||||| ||||| |||||| ||||| || || | || ||| |
Sbjct 1820 GATACCATCGACAAT--GTCAAGGCAAAAATTCAGGACAAGGAGGGGATCCCACCGGATC 1877
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || | || |||||||| ||||| |||| || | |||| | | | |||||||
Sbjct 1878 AGCAGAGGCTGATCTTTGCCGGCAAACAGCTGGAGGATGGCCGCACCCTCGCGGATTACA 1937
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| || || || | || |||||| | || | ||||| ||
Sbjct 1938 ACATCCAGAAGGAATCGACCCTCCACTTGGTTCTCCGCCTCCGTGGTGG 1986
>seq21627
Length=4779
Score = 87.8 bits (96), Expect = 1e-12
Identities = 137/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || || ||||| || || ||||| || || || | || || |||||| ||
Sbjct 3706 ATGCAGATCTTCGTGAAGACCCTCACTGGCAAGACGATCACCCTCGAGGTTGAAAGCTCC 3647
Query 27850 GACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
||| || ||||| ||||| ||| || ||||||||||| | || ||| |
Sbjct 3646 GACACCATTGACAAT--GTCAAGGCAAAGATCCAGGACAAAGAAGGAATCCCACCGGACC 3589
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||||||| | || ||||||||||| || |||| |||| || | || |||| ||||
Sbjct 3588 AGCAACGGCTGATCTTTGCCGGAAAGCAGCTGGAGGACGGCCGGACTTTAGCCGACTACA 3529
Query 27968 ACATCCAAAAAGAG 27981
||||||| || |||
Sbjct 3528 ACATCCAGAAGGAG 3515
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849
||||| || ||||| ||||| || || |||||| ||||| | || ||||||||| |
Sbjct 3022 ATGCAGATCTTTGTCAAAACCCTCACCGGGAAAACGATTACCCTCGAGGTCGAAAGCTCT 2963
Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907
|| | || ||||| ||||| |||||| ||||| || || | || ||| |
Sbjct 2962 GATACCATTGACAAT--GTCAAGGCAAAAATTCAGGACAAGGAGGGGATCCCACCGGATC 2905
Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967
|||| || | || |||||||| ||||| | || || | |||| | | | |||||||
Sbjct 2904 AGCAGAGGCTGATCTTTGCCGGCAAACAGCTTGAGGATGGCCGCACCCTCGCGGATTACA 2845
Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016
||||||| || || || | || |||||| | || | ||||| ||
Sbjct 2844 ACATCCAGAAGGAATCGACCCTCCACTTGGTTCTCCGCCTCCGTGGTGG 2796
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 355746509072367
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |