Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2905 91.5 1e-13 seq7849 86.0 5e-12 seq892 84.2 2e-11 >seq2905 Length=56485 Score = 91.5 bits (100), Expect = 1e-13 Identities = 161/232 (69%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||| | | ||| | |||||| || ||||| ||| || || || || || ||||| Sbjct 52762 GCCTCCACGGAGGCGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 52703 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || || ||| |||| || |||||||| || || || || || ||||||||||| | || Sbjct 52702 GAGGGTGCGTCCGTCCTCCAGCTGTTTTCCGGCGAAGATCAGCCGCTGCTGGTCTGGAGG 52643 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235 | || || |||| | ||| | | || |||| | | | || ||| || || | Sbjct 52642 AATGCCTTCCTTGT-CTTGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAGGATTCGA 52584 Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | || | || ||| | || ||||| || ||||| || ||||| |||||||| Sbjct 52583 CCTCTAGGGTAATAGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 52532 >seq7849 Length=122270 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Plus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || ||||| || ||||| || || | || || |||||| Sbjct 81092 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCCGCAAGAGTGCGGCCATCCTCGAGCTGT 81151 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || || || || ||||||||||| || | || | || ||||||||| |||||| Sbjct 81152 TTTCCTGCGAAGATCAGACGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATTTTG 81211 Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 ||||| ||| | | | ||| ||| ||| || || | || || | || || || Sbjct 81212 GCTTTGA-CGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGGT 81270 Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTA 39289 || ||||| || ||||| ||||||| || Sbjct 81271 TAGGGTTTTCACGAAGATCTGCATCTGTA 81299 >seq892 Length=123481 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116 |||||| | | ||| | ||||| || ||||| ||| || || || || || ||||| Sbjct 88256 GCCTCCGCGAAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 88315 Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176 || || || |||| || |||||||| || || || || || ||||||||||| | || Sbjct 88316 GAGGGTGCGACCGTCCTCCAGCTGTTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGG 88375 Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236 | || ||||||||| ||| || |||| | | | || || || || || Sbjct 88376 AATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGATGATTCAAC 88435 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || | || || | || ||||| || ||||| || ||||| |||||||| Sbjct 88436 CTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 88486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429405713240273