Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_029996.1
Length=134272
Score E
Sequences producing significant alignments: (Bits) Value
seq2905 91.5 1e-13
seq7849 86.0 5e-12
seq892 84.2 2e-11
>seq2905
Length=56485
Score = 91.5 bits (100), Expect = 1e-13
Identities = 161/232 (69%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
|||||| | | ||| | |||||| || ||||| ||| || || || || || |||||
Sbjct 52762 GCCTCCACGGAGGCGGAGCACCAAGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 52703
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176
|| || ||| |||| || |||||||| || || || || || ||||||||||| | ||
Sbjct 52702 GAGGGTGCGTCCGTCCTCCAGCTGTTTTCCGGCGAAGATCAGCCGCTGCTGGTCTGGAGG 52643
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCA 39235
| || || |||| | ||| | | || |||| | | | || ||| || || |
Sbjct 52642 AATGCCTTCCTTGT-CTTGAATCTTTGCCTTGACATTGTCGATGGTGTCGGAGGATTCGA 52584
Query 39236 CGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
| || | || ||| | || ||||| || ||||| || ||||| ||||||||
Sbjct 52583 CCTCTAGGGTAATAGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 52532
>seq7849
Length=122270
Score = 86.0 bits (94), Expect = 5e-12
Identities = 146/209 (70%), Gaps = 2/209 (1%)
Strand=Plus/Plus
Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141
|| || ||| ||| || || || ||||| || ||||| || || | || || ||||||
Sbjct 81092 TGGAGGGTGGACTCCTTCTGGATGTTATAGTCCGCAAGAGTGCGGCCATCCTCGAGCTGT 81151
Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201
|| || || || || ||||||||||| || | || | || ||||||||| ||||||
Sbjct 81152 TTTCCTGCGAAGATCAGACGCTGCTGATCCGGAGGAATGCCTTCTTTGTCCTGGATTTTG 81211
Query 39202 TGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260
||||| ||| | | | ||| ||| ||| || || | || || | || || ||
Sbjct 81212 GCTTTGA-CGTTGTCGATCGTGTCGGAGCTCTCGACCTCGAGAGTTATGGTCTTGCCGGT 81270
Query 39261 CAGCGTTTTAACAAAGATTTGCATCTTTA 39289
|| ||||| || ||||| ||||||| ||
Sbjct 81271 TAGGGTTTTCACGAAGATCTGCATCTGTA 81299
>seq892
Length=123481
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 39057 GCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGC 39116
|||||| | | ||| | ||||| || ||||| ||| || || || || || |||||
Sbjct 88256 GCCTCCGCGAAGGCGGAGCACCAGGTGGAGCGTCGACTCCTTCTGGATGTTGTAGTCGGC 88315
Query 39117 AAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGG 39176
|| || || |||| || |||||||| || || || || || ||||||||||| | ||
Sbjct 88316 GAGGGTGCGACCGTCCTCCAGCTGTTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGAGG 88375
Query 39177 CACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCAC 39236
| || ||||||||| ||| || |||| | | | || || || || ||
Sbjct 88376 AATGCCCTCTTTGTCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCAGATGATTCAAC 88435
Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287
|| | || || | || ||||| || ||||| || ||||| ||||||||
Sbjct 88436 CTCTAGGGTTATGGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCATCTT 88486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 429405713240273
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |