Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq10 118 1e-21
seq6300 109 8e-19
>seq10
Length=262601
Score = 118 bits (130), Expect = 1e-21
Identities = 149/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217
||| || ||||| | ||| | ||| |||| ||| |||||| | |||||||| || |||
Sbjct 128811 ACCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACACC 128752
Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277
|| ||||| |||||||||||| ||||||||| || | || || |||||| || ||
Sbjct 128751 ATTGGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGGATATTATGAACAGA 128692
Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337
| || |||||||| || || || | ||| || |||||| ||||| || ||
Sbjct 128691 GAGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATAT 128632
Query 78338 ACCCTCTATACTGTCATCCATCATG 78362
|| || |||||||||||| |||||
Sbjct 128631 TCCTTCAATACTGTCATCCTTCATG 128607
Score = 105 bits (116), Expect = 9e-18
Identities = 128/172 (74%), Gaps = 2/172 (1%)
Strand=Plus/Minus
Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956
|| ||| |||||||| || ||||| |||||||| |||||||| |||| |||| ||
Sbjct 129493 CTGTCTCTCATATTGGGTGTATAGGTTCTCAAATTCTTCTCCCCAGCAATCAGCCAAACC 129434
Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015
|| | ||||||||||| | ||| ||||| | |||| | | || |||| || |||||
Sbjct 129433 TGGAGACTCATTTGGGCAAAACAAAGACCATTGCCCAT-TACTTTGGACTCTTTCCATAA 129375
Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067
| |||||||||| ||| |||||| ||| ||||| | | || || |||||
Sbjct 129374 ACAGATCAGGTACCCACAGAGCATAAAACAGATCCCTAGCTCGGTGCTCTTC 129323
Score = 84.2 bits (92), Expect = 3e-11
Identities = 142/202 (70%), Gaps = 4/202 (2%)
Strand=Plus/Minus
Query 77142 AATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 77201
|| ||||||||| | || || || |||||||||||| | | ||||||||||| | |
Sbjct 131152 AAAACTCTACGACTATAGATGTTGGAGGTATATGGTTCAAAGCACTCATTGTTTCCAAGA 131093
Query 77202 ATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 77261
|| || || |||||||| ||||||||||| || | | |||||| | ||||| |
Sbjct 131092 ATCTGGCTGGTTGAAGCAGTGGGCATAGGTGCTACAAGAAGTGAATTTCTCACACCAT-T 131034
Query 77262 GTT--CTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCC 77319
||| || || || | ||| | ||||||||| ||| ||||||| |||| |||
Sbjct 131033 GTTGGCT-ATCATACCCCGCAGAGCATCCCAATCCCATCGATTTGAAGGTGTAACACCCC 130975
Query 77320 AAAGATCGTATTGTAGAATTCC 77341
| | || ||| ||||||||
Sbjct 130974 ACATGTCTGGTTGAAGAATTCC 130953
>seq6300
Length=25064
Score = 109 bits (120), Expect = 8e-19
Identities = 118/154 (77%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956
|| ||| |||||||| || ||||| |||||||| |||||||| |||| |||| ||
Sbjct 11859 CTGTCTCTCATATTGGGTGTATAGGTTCTCAAATTCTTCTCCCCAGCAATCAGCCAAACC 11918
Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015
|| | ||||||||||| | ||| ||||| | |||| | | || |||| || |||||
Sbjct 11919 TGGAGACTCATTTGGGCAAAACAAAGACCATTGCCCAT-TACTTTGGACTCTTTCCATAA 11977
Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATC 78049
| |||||||||| ||| |||||| |||||||||
Sbjct 11978 ACAGATCAGGTACCCACAGAGCATAAAATAGATC 12011
Score = 109 bits (120), Expect = 8e-19
Identities = 147/205 (72%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217
||| || ||||| | ||| | ||| |||| |||| |||||| | |||||||| | |||
Sbjct 13281 ACCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGAAGCATTGGAACCACACC 13340
Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277
|| ||||| |||||||||||| |||||| || || | || || |||||| || ||
Sbjct 13341 ATTGGATGTCCCATTTGTTCCACGAATATAGCTGCCGGTAGCACGGATATTATGAACAGA 13400
Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337
| || |||||||| || ||| || | ||| || |||||| ||||| || ||
Sbjct 13401 AACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCTTTCAAGGTATCATATAT 13460
Query 78338 ACCCTCTATACTGTCATCCATCATG 78362
|| || || |||||||| |||||
Sbjct 13461 TCCTTCAATGCTGTCATCTTTCATG 13485
Score = 84.2 bits (92), Expect = 3e-11
Identities = 142/202 (70%), Gaps = 4/202 (2%)
Strand=Plus/Plus
Query 77142 AATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 77201
|| ||||| ||| | || || || |||||||||||| | | ||||||||||| | |
Sbjct 10205 AAAACTCTGCGACTATAGATGTTGGAGGTATATGGTTCAAAGCACTCATTGTTTCCGAGA 10264
Query 77202 ATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 77261
||||| || || ||||| ||||||||||| || | | |||||| | ||||| |
Sbjct 10265 ATTTGGCTGGTTGATGCAGTGGGCATAGGTGCTACAAGAAGTGAATTTCTCACACCAT-T 10323
Query 77262 GTTCTGATTT--TATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCC 77319
||| ||| | || | |||| | ||||||||| ||| ||||||| |||| |||
Sbjct 10324 GTT-GGATATCATACCCCGCAGATCATCCCAATCCCATCGATTTGAAGGTGTAACACCCC 10382
Query 77320 AAAGATCGTATTGTAGAATTCC 77341
| | || ||| ||||||||
Sbjct 10383 ACATGTCCGGTTGAAGAATTCC 10404
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458
|| ||||||||||| | || || |||||||| || |||||| | | ||| | | ||
Sbjct 13733 GTCCCTGCATTAAAAAGAGTAGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 13792
Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517
|| |||| ||| | || | || || | ||| || || || || || || | ||||||
Sbjct 13793 TAAGTTTTGATAACAGAATAGATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCAA 13851
Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577
||| || ||||| |||||||| ||| | || |||||||||||| || | || |
Sbjct 13852 CATGTGTTGAGGCCTTTCAACAACCTTTCCTTGTACTTTCAACAAGTAAGACCTCTCAAG 13911
Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625
|| || || ||||| || | || |||||||| || || || ||
Sbjct 13912 TGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATTAT 13959
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694436771937440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |