Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq10 118 1e-21 seq6300 109 8e-19 >seq10 Length=262601 Score = 118 bits (130), Expect = 1e-21 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | ||| |||| ||| |||||| | |||||||| || ||| Sbjct 128811 ACCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACACC 128752 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| ||||||||| || | || || |||||| || || Sbjct 128751 ATTGGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGGATATTATGAACAGA 128692 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || || || | ||| || |||||| ||||| || || Sbjct 128691 GAGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATAT 128632 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 || || |||||||||||| ||||| Sbjct 128631 TCCTTCAATACTGTCATCCTTCATG 128607 Score = 105 bits (116), Expect = 9e-18 Identities = 128/172 (74%), Gaps = 2/172 (1%) Strand=Plus/Minus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || ||| |||||||| || ||||| |||||||| |||||||| |||| |||| || Sbjct 129493 CTGTCTCTCATATTGGGTGTATAGGTTCTCAAATTCTTCTCCCCAGCAATCAGCCAAACC 129434 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 || | ||||||||||| | ||| ||||| | |||| | | || |||| || ||||| Sbjct 129433 TGGAGACTCATTTGGGCAAAACAAAGACCATTGCCCAT-TACTTTGGACTCTTTCCATAA 129375 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 | |||||||||| ||| |||||| ||| ||||| | | || || ||||| Sbjct 129374 ACAGATCAGGTACCCACAGAGCATAAAACAGATCCCTAGCTCGGTGCTCTTC 129323 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Minus Query 77142 AATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 77201 || ||||||||| | || || || |||||||||||| | | ||||||||||| | | Sbjct 131152 AAAACTCTACGACTATAGATGTTGGAGGTATATGGTTCAAAGCACTCATTGTTTCCAAGA 131093 Query 77202 ATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 77261 || || || |||||||| ||||||||||| || | | |||||| | ||||| | Sbjct 131092 ATCTGGCTGGTTGAAGCAGTGGGCATAGGTGCTACAAGAAGTGAATTTCTCACACCAT-T 131034 Query 77262 GTT--CTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCC 77319 ||| || || || | ||| | ||||||||| ||| ||||||| |||| ||| Sbjct 131033 GTTGGCT-ATCATACCCCGCAGAGCATCCCAATCCCATCGATTTGAAGGTGTAACACCCC 130975 Query 77320 AAAGATCGTATTGTAGAATTCC 77341 | | || ||| |||||||| Sbjct 130974 ACATGTCTGGTTGAAGAATTCC 130953 >seq6300 Length=25064 Score = 109 bits (120), Expect = 8e-19 Identities = 118/154 (77%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 || ||| |||||||| || ||||| |||||||| |||||||| |||| |||| || Sbjct 11859 CTGTCTCTCATATTGGGTGTATAGGTTCTCAAATTCTTCTCCCCAGCAATCAGCCAAACC 11918 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 || | ||||||||||| | ||| ||||| | |||| | | || |||| || ||||| Sbjct 11919 TGGAGACTCATTTGGGCAAAACAAAGACCATTGCCCAT-TACTTTGGACTCTTTCCATAA 11977 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATC 78049 | |||||||||| ||| |||||| ||||||||| Sbjct 11978 ACAGATCAGGTACCCACAGAGCATAAAATAGATC 12011 Score = 109 bits (120), Expect = 8e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| || ||||| | ||| | ||| |||| |||| |||||| | |||||||| | ||| Sbjct 13281 ACCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGAAGCATTGGAACCACACC 13340 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || ||||| |||||||||||| |||||| || || | || || |||||| || || Sbjct 13341 ATTGGATGTCCCATTTGTTCCACGAATATAGCTGCCGGTAGCACGGATATTATGAACAGA 13400 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || ||| || | ||| || |||||| ||||| || || Sbjct 13401 AACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCTTTCAAGGTATCATATAT 13460 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 || || || |||||||| ||||| Sbjct 13461 TCCTTCAATGCTGTCATCTTTCATG 13485 Score = 84.2 bits (92), Expect = 3e-11 Identities = 142/202 (70%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 77142 AATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 77201 || ||||| ||| | || || || |||||||||||| | | ||||||||||| | | Sbjct 10205 AAAACTCTGCGACTATAGATGTTGGAGGTATATGGTTCAAAGCACTCATTGTTTCCGAGA 10264 Query 77202 ATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 77261 ||||| || || ||||| ||||||||||| || | | |||||| | ||||| | Sbjct 10265 ATTTGGCTGGTTGATGCAGTGGGCATAGGTGCTACAAGAAGTGAATTTCTCACACCAT-T 10323 Query 77262 GTTCTGATTT--TATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCC 77319 ||| ||| | || | |||| | ||||||||| ||| ||||||| |||| ||| Sbjct 10324 GTT-GGATATCATACCCCGCAGATCATCCCAATCCCATCGATTTGAAGGTGTAACACCCC 10382 Query 77320 AAAGATCGTATTGTAGAATTCC 77341 | | || ||| |||||||| Sbjct 10383 ACATGTCCGGTTGAAGAATTCC 10404 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || ||||||||||| | || || |||||||| || |||||| | | ||| | | || Sbjct 13733 GTCCCTGCATTAAAAAGAGTAGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 13792 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || |||| ||| | || | || || | ||| || || || || || || | |||||| Sbjct 13793 TAAGTTTTGATAACAGAATAGATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCAA 13851 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || ||||| |||||||| ||| | || |||||||||||| || | || | Sbjct 13852 CATGTGTTGAGGCCTTTCAACAACCTTTCCTTGTACTTTCAACAAGTAAGACCTCTCAAG 13911 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 || || || ||||| || | || |||||||| || || || || Sbjct 13912 TGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATTAT 13959 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694436771937440