Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16] 26,721 sequences; 604,217,145 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq10 136 6e-27 seq6300 122 1e-22 >seq10 Length=262601 Score = 136 bits (150), Expect = 6e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | ||| | |||||||| ||| |||||| | |||||||| || || Sbjct 128811 ACCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACACC 128752 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| ||||||||| || ||||| |||||| || ||| Sbjct 128751 ATTGGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGGATATTATGAACAGA 128692 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 || || |||||||| || ||| ||| | |||||| |||||| || ||||| || Sbjct 128691 GAGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATAT 128632 Query 76933 GCCCTCTATACTATCATCCATCATG 76957 || || ||||| |||||| ||||| Sbjct 128631 TCCTTCAATACTGTCATCCTTCATG 128607 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || |||||||| || | ||||| |||||||||||||||||| | | ||| | | || Sbjct 128246 GTCCCTGCATTGAAAAGGGTAGGGGATGCATGAGTGAACCATCTCTGAGACATCAAATGT 128187 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || ||| || || | || ||||| | ||| || || || ||||| || | |||||| Sbjct 128186 TAAGTTCTGATGACAGAGTCGATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCAA 128128 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | ||| ||| || | || |||||| | ||| || | || | Sbjct 128127 CATGTGTTGAGGCCTTTCAACAACATTTCCTTGTACTTTCAAAAGGTAGGACCTCTCAAG 128068 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || || || ||||| |||| || |||||||| || || || || Sbjct 128067 GGTCTTGAAGCCAAAGTAGTCATAGTCAAAGTCTCGATCATAGATTAT 128020 >seq6300 Length=25064 Score = 122 bits (134), Expect = 1e-22 Identities = 150/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| || ||||| | ||| | |||||||| |||| |||||| | |||||||| | || Sbjct 13281 ACCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGAAGCATTGGAACCACACC 13340 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || ||||| |||||||||||| |||||| || || ||||| |||||| || ||| Sbjct 13341 ATTGGATGTCCCATTTGTTCCACGAATATAGCTGCCGGTAGCACGGATATTATGAACAGA 13400 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || |||| ||| | |||||| |||||| || ||||| || Sbjct 13401 AACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCTTTCAAGGTATCATATAT 13460 Query 76933 GCCCTCTATACTATCATCCATCATG 76957 || || || || ||||| ||||| Sbjct 13461 TCCTTCAATGCTGTCATCTTTCATG 13485 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || ||||||||||| | ||||| |||||||||||||||||| | | ||| | | || Sbjct 13733 GTCCCTGCATTAAAAAGAGTAGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 13792 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 || |||| ||||| | | ||||| | ||| || || || ||||| || | |||||| Sbjct 13793 TAAGTTTTGATAACAGAATAGATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCAA 13851 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | ||| ||| ||| | || |||||||||||| || | || | Sbjct 13852 CATGTGTTGAGGCCTTTCAACAACCTTTCCTTGTACTTTCAACAAGTAAGACCTCTCAAG 13911 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 || || || ||||| || | || |||||||| || || || || Sbjct 13912 TGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATTAT 13959 Score = 86.0 bits (94), Expect = 9e-12 Identities = 149/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 75737 AATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 75796 || ||||| ||| | || || || |||||||||||| | | ||||||||||| | | Sbjct 10205 AAAACTCTGCGACTATAGATGTTGGAGGTATATGGTTCAAAGCACTCATTGTTTCCGAGA 10264 Query 75797 ATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 75856 ||||| ||||| ||||| ||||||||||| || | | |||||| | ||||| | Sbjct 10265 ATTTGGCTGGTTGATGCAGTGGGCATAGGTGCTACAAGAAGTGAATTTCTCACACCAT-T 10323 Query 75857 GTTCTGATTT--TATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCC 75914 ||| ||| | || | |||| | ||||||||| ||| ||| ||| |||| ||| Sbjct 10324 GTT-GGATATCATACCCCGCAGATCATCCCAATCCCATCGATTTGAAGGTGTAACACCCC 10382 Query 75915 AGAGATCGTATTGTAGAATTCCGTTGCTAGCAT 75947 | | || ||| |||||||| | | ||||| Sbjct 10383 ACATGTCCGGTTGAAGAATTCCCTGGACAGCAT 10415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712696270998720