Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Actinidia_20chinensis_20[genbank_20GCA_5F000467755.1_202013-09-16]
26,721 sequences; 604,217,145 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq10 136 6e-27
seq6300 122 1e-22
>seq10
Length=262601
Score = 136 bits (150), Expect = 6e-27
Identities = 153/205 (75%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812
||| || ||||| | ||| | |||||||| ||| |||||| | |||||||| || ||
Sbjct 128811 ACCCCCTTGATCAACATAACGGGCAGTGTCATTGAAAACTCGAAGCATTGGAACAACACC 128752
Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872
|| ||||| |||||||||||| ||||||||| || ||||| |||||| || |||
Sbjct 128751 ATTGGATGTCCCATTTGTTCCACGAATATAACTGCCTGTAGCACGGATATTATGAACAGA 128692
Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932
|| || |||||||| || ||| ||| | |||||| |||||| || ||||| ||
Sbjct 128691 GAGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCTTTCAAGGTATCATATAT 128632
Query 76933 GCCCTCTATACTATCATCCATCATG 76957
|| || ||||| |||||| |||||
Sbjct 128631 TCCTTCAATACTGTCATCCTTCATG 128607
Score = 84.2 bits (92), Expect = 3e-11
Identities = 157/228 (69%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| |||||||| || | ||||| |||||||||||||||||| | | ||| | | ||
Sbjct 128246 GTCCCTGCATTGAAAAGGGTAGGGGATGCATGAGTGAACCATCTCTGAGACATCAAATGT 128187
Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112
|| ||| || || | || ||||| | ||| || || || ||||| || | ||||||
Sbjct 128186 TAAGTTCTGATGACAGAGTCGATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCAA 128128
Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172
||| || ||||| | ||| ||| || | || |||||| | ||| || | || |
Sbjct 128127 CATGTGTTGAGGCCTTTCAACAACATTTCCTTGTACTTTCAAAAGGTAGGACCTCTCAAG 128068
Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
|| || || ||||| |||| || |||||||| || || || ||
Sbjct 128067 GGTCTTGAAGCCAAAGTAGTCATAGTCAAAGTCTCGATCATAGATTAT 128020
>seq6300
Length=25064
Score = 122 bits (134), Expect = 1e-22
Identities = 150/205 (73%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812
||| || ||||| | ||| | |||||||| |||| |||||| | |||||||| | ||
Sbjct 13281 ACCCCCTTGATCAACATAACGGGCAGTGTCATTAAAAACTCGAAGCATTGGAACCACACC 13340
Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872
|| ||||| |||||||||||| |||||| || || ||||| |||||| || |||
Sbjct 13341 ATTGGATGTCCCATTTGTTCCACGAATATAGCTGCCGGTAGCACGGATATTATGAACAGA 13400
Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932
| || |||||||| || |||| ||| | |||||| |||||| || ||||| ||
Sbjct 13401 AACACCAATTCCTCCAGCTGATTTACTGATAACAGCACACTCTTTCAAGGTATCATATAT 13460
Query 76933 GCCCTCTATACTATCATCCATCATG 76957
|| || || || ||||| |||||
Sbjct 13461 TCCTTCAATGCTGTCATCTTTCATG 13485
Score = 102 bits (112), Expect = 1e-16
Identities = 161/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053
|| ||||||||||| | ||||| |||||||||||||||||| | | ||| | | ||
Sbjct 13733 GTCCCTGCATTAAAAAGAGTAGGTGATGCATGAGTGAACCATCTCTGAGACATCAAATGA 13792
Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112
|| |||| ||||| | | ||||| | ||| || || || ||||| || | ||||||
Sbjct 13793 TAAGTTTTGATAACAGAATAGATATCATCCTTG-TGGATCCCAACAGCAACCCTCATCAA 13851
Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172
||| || ||||| | ||| ||| ||| | || |||||||||||| || | || |
Sbjct 13852 CATGTGTTGAGGCCTTTCAACAACCTTTCCTTGTACTTTCAACAAGTAAGACCTCTCAAG 13911
Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220
|| || || ||||| || | || |||||||| || || || ||
Sbjct 13912 TGTCTTGAAGCCAAAGTAATCATAGTCAAAGTCTCGATCATAGATTAT 13959
Score = 86.0 bits (94), Expect = 9e-12
Identities = 149/213 (70%), Gaps = 4/213 (2%)
Strand=Plus/Plus
Query 75737 AATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 75796
|| ||||| ||| | || || || |||||||||||| | | ||||||||||| | |
Sbjct 10205 AAAACTCTGCGACTATAGATGTTGGAGGTATATGGTTCAAAGCACTCATTGTTTCCGAGA 10264
Query 75797 ATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGT 75856
||||| ||||| ||||| ||||||||||| || | | |||||| | ||||| |
Sbjct 10265 ATTTGGCTGGTTGATGCAGTGGGCATAGGTGCTACAAGAAGTGAATTTCTCACACCAT-T 10323
Query 75857 GTTCTGATTT--TATCTTTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCCC 75914
||| ||| | || | |||| | ||||||||| ||| ||| ||| |||| |||
Sbjct 10324 GTT-GGATATCATACCCCGCAGATCATCCCAATCCCATCGATTTGAAGGTGTAACACCCC 10382
Query 75915 AGAGATCGTATTGTAGAATTCCGTTGCTAGCAT 75947
| | || ||| |||||||| | | |||||
Sbjct 10383 ACATGTCCGGTTGAAGAATTCCCTGGACAGCAT 10415
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712696270998720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |