Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq14462 168 1e-36 seq17157 98.7 2e-15 seq17153 98.7 2e-15 seq16546 98.7 2e-15 seq16000 98.7 2e-15 seq15778 98.7 2e-15 seq15193 98.7 2e-15 seq15023 98.7 2e-15 seq14413 98.7 2e-15 seq14259 98.7 2e-15 seq12573 98.7 2e-15 seq7669 98.7 2e-15 seq12034 91.5 3e-13 >seq14462 Length=746139 Score = 168 bits (186), Expect = 1e-36 Identities = 565/863 (65%), Gaps = 35/863 (4%) Strand=Plus/Plus Query 229758 GTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCAACTTTCTG 229817 |||||| || ||||| || | || ||||| |||||||||||||| | ||| | || || Sbjct 137366 GTTCCCGATTCAATACCCACAGATCTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTTTG 137425 Query 229818 GACCACTGAGGAAGTTCCTCTGAACGCA-GACGTCGTCGACTGGCGTGAGAAACTCAATG 229876 ||| | |||||||| ||| | | || |||| ||| ||| ||||| | || | Sbjct 137426 GACTGCCGAGGAAGTCGATCT-ATCACAGGACGGACGCGATTGG---GAGAATTTAAACG 137481 Query 229877 ACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 229936 ||| |||||| || |||||||| || || ||| || ||||| | ||| ||||| || | Sbjct 137482 ACGGCGAACGACACTTCATCAAGCATGTCTTAGCCTTCTTCGCCGCCTCTGATGGCATCG 137541 Query 229937 TGATGGAAAATC-TGCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGAGGCACGGCA 229994 | |||| |||| |||| | | || ||| || || ||| | ||||| || Sbjct 137542 TCTTGGAGAATCTTGCATCTCGA--TTCATGTCCGATGTTCAGGTATCGGAGGCGCGTGC 137599 Query 229995 ATTTTATGCTTACCAAA----CATTCAACGAATCTATCCATTCTGAACAATATGCTCTGC 230050 || || | | |||| ||| | ||| ||| ||||| || ||| ||| | Sbjct 137600 TTTCTACGGATTTCAAATCGCGATTGA--GAA--TATTCATTCGGAGATGTATAGTCTAC 137655 Query 230051 TTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCATTGAAA 230110 || | || | || ||| | ||||| | || | || ||| || || |||| Sbjct 137656 TTCTTGATACCTACATCAAGGACAACAAAGAAAGAGACCATCTCTTTCGCGCAATCGAAA 137715 Query 230111 ACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGGTAAAT 230170 |||||| ||| || || || | ||||| || ||| | || | || Sbjct 137716 CAATCCCGTGTGTTGCCAAGAAAGCGCAATGGGCGATGACTTGGATCGACGGATCTCAAA 137775 Query 230171 CGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGAGTT 230230 | ||||| |||||| |||| |||| | || ||||||||||| | || ||||| |||| Sbjct 137776 CCTTTGCGGAGCGTATCGTAGCCTTCGCCTGCGTTGAAGGTATCTTCTTCTCCGGTAGTT 137835 Query 230231 TCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACG 230290 ||||| |||| || ||||| || |||| | |||||||| ||| | || |||| Sbjct 137836 TCTGCTCCATTTTCTGGCTTAAAAAACGAGGTCTCATGCCTGGACTCACCTTCTCCAACG 137895 Query 230291 AGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTC--AAA 230348 |||| ||| || ||||| || |||||| | ||| |||| | | || || Sbjct 137896 AGTTAATCTCACGAGACGAAGGCCTCCATTGCGATTTC-----GCTTGTCTGCTCTACAA 137950 Query 230349 GCTCC--AGAA-CAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTGA 230405 |||| |||| ||| || || ||| || || |||| | || ||||| || Sbjct 137951 TCTCCTGAGAACCAAATTAACAGAGGAGCGCGTGAAGTCAATCGTATGCGACGCAGTGGA 138010 Query 230406 AAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACGCTG 230464 | ||| | |||||| | || ||||| |||| || ||| || |||| ||||| || Sbjct 138011 GATCGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTG-CGCGTTGGTTGGGATGAATCGTG 138069 Query 230465 AACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTACG 230524 | || ||| | || ||||||||||||||||| || || | || | ||| | || |||| Sbjct 138070 ACCTAATGAGTCAATACATCGAATTCGTAGCGGATCGGTTGTTGGGTGCGTTAGGGTACG 138129 Query 230525 AGAAAGTGTA---CAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAG 230581 || ||||| ||| || || |||| | |||||||| |||||||| || | Sbjct 138130 GTAAGGTGTATGGTGTGTCT---AATCCGTTTGATTGGATGGAGCTTATTTCGCTGCAGG 138186 Query 230582 GGAAGACCAACTTCTTCGAAAAG 230604 | || || ||||||||||| ||| Sbjct 138187 GTAAAACAAACTTCTTCGAGAAG 138209 >seq17157 Length=107604 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 98319 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 98378 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 98379 CCCACGGTGGGC 98390 >seq17153 Length=145742 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 16070 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 16011 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 16010 CCCACGGTGGGC 15999 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 43583 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 43642 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 43643 CCCACGGTGGGC 43654 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 43873 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 43932 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 43933 CCCACGGTGGGC 43944 >seq16546 Length=433850 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 77356 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 77415 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 77416 CCCACGGTGGGC 77427 >seq16000 Length=993530 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 161338 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 161279 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 161278 CCCACGGTGGGC 161267 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 490937 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 490878 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 490877 CCCACGGTGGGC 490866 >seq15778 Length=365950 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 163051 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 162992 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 162991 CCCACGGTGGGC 162980 >seq15193 Length=302976 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 225670 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 225611 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 225610 CCCACGGTGGGC 225599 >seq15023 Length=735153 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 642983 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 642924 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 642923 CCCACGGTGGGC 642912 >seq14413 Length=739167 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 131401 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 131342 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 131341 CCCACGGTGGGC 131330 >seq14259 Length=924403 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 337370 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 337429 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 337430 CCCACGGTGGGC 337441 >seq12573 Length=1000341 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 568230 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 568171 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 568170 CCCACGGTGGGC 568159 >seq7669 Length=1125 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 11 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 70 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 71 CCCACGGTGGGC 82 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 301 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 360 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 361 CCCACGGTGGGC 372 >seq12034 Length=591637 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||| |||||||||| Sbjct 148696 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCG-GGGTTCGAGC 148754 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 148755 CCCACGGTGGGC 148766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057575810688560