Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Aethionema_20arabicum_20[genbank_20GCA_5F000411095.1_202013-06-14] 18,312 sequences; 192,487,774 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq14462 141 1e-28 >seq14462 Length=746139 Score = 141 bits (156), Expect = 1e-28 Identities = 574/883 (65%), Gaps = 21/883 (2%) Strand=Plus/Minus Query 16674 TTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCT 16733 |||||||||| | ||| | || ||||| ||||| ||||| |||| || || ||| || Sbjct 138228 TTTGGTAATCTCCAACTCTCTTCTCGAAGAAGTTTGTTTTACCCTGCAGCGAAATAAGCT 138169 Query 16734 CCATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTA 16793 |||| ||||||| ||||||| | | | | ||| |||||| | | | | | Sbjct 138168 CCATCCAATCAAACGGATTAGACACACCATACACCTTACCGTACCCTAACGCACCCAACA 138109 Query 16794 ATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGAC 16853 | | ||||||||| ||||| || ||||| | ||||| || | ||||| || | | || Sbjct 138108 ACCGATCCGCTACGAATTCGATGTATTGACTCATTAGGTCACGATTCATCCCAACCA-AC 138050 Query 16854 GTAC-CGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTC-CTTAATAA 16910 | | |||||| || || || ||| || | ||| || | || || || | || | Sbjct 138049 GCGCACGGAAGCGCGTCGCACACAAACTCCCT-CTCGATCTCCACTGCGTCGCATACGAT 137991 Query 16911 T-ACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCG 16969 | ||| || || ||||| | | | | | || | || | | |||||| ||| Sbjct 137990 TGACTTC--ACGCGCTCCTCTGTTAATTTGGTTCTCAGGAGATTGTAGAGCAGACAAGCG 137933 Query 16970 AAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGC 17029 ||||||||||| | || ||||||| ||| | ||||| || || || | || ||| Sbjct 137932 AAATCGCAATGGAGGCCTTCGTCTCGTGAGATTAACTCGTTGGAGAAGGTGAGTCCAGGC 137873 Query 17030 ATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCC 17089 || |||||||| || | ||| || || | | ||| || || ||||| ||||| Sbjct 137872 ATGAGACCTCGTTTTTTAAGCCAGAAAATGGAGCAGAAACTACCGGAGAAGAAGATACCT 137813 Query 17090 TCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCAT 17149 || ||| | || || || | | || || || | || | || ||| |||| Sbjct 137812 TCAACGCAGGCGAAGGCTACGATACGCTCCGCAAAGGTTTGAGATCCGT--CGA-TCCAA 137756 Query 17150 TTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAAT 17209 || | |||| | ||||| | | || || ||||| || || ||| | Sbjct 137755 GTCATCGCCCATTGCGCTTTCTTGGCAACACACGGGATTGTTTCGATTGCGCGAAAGAGA 137696 Query 17210 TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 | ||| |||| | ||| | || || ||||| | ||||| || ||||| || || Sbjct 137695 TGGTCTCTTTCTTTGTTGTCCTTGATGTAGGTATCAAGAAGTAGACTATACATCTCCGAA 137636 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTGAAC 17328 || || ||||| || || || ||||||||||| |||||| || || |||| || ||||| Sbjct 137635 TGAATATTCTCAATCGCGATTTGAAATCCGTAGAAAGCA-CGCGCCTCCGATACCTGAAC 137577 Query 17329 TTC-CACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAA 17387 || || | |||||| || ||||| || |||||||| || |||||||| | Sbjct 137576 ATCGGACAT-GAATCGAGATGCAAGATTCTCCAAGACGATGCCATCAGAGGCGGCGAAGA 137518 Query 17388 ACGCCAATATATGCTTAATGAAATATTTTTCGTCCG--GTGTAAGAACGCGCCAGTCCTT 17445 | || || | |||||| ||||| | | |||| ||| || ||| | | ||| || Sbjct 137517 AGGCTAAGACATGCTTGATGAAGTGTCGTTCG-CCGTCGTTTAAATTCTC-CCAATCGCG 137460 Query 17446 TAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATA 17505 | || | |||| ||| ||||| |||| |||||||| ||| | ||||| || || Sbjct 137459 TCCGTCCTGTGATAGATCGACTTCCTCGGCAGTCCAAAACGACGCCTCGGCCTTCTTGTA 137400 Query 17506 CATATTCCAAATATCATTGTATTGTATGGGGA--ATACAACAT 17546 ||| | ||| || | |||||| || |||| |||||| || Sbjct 137399 CATCTCCCAGATCTGTGGGTATTGAATCGGGAACATACAAAAT 137357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517427133812160